Wall clock time and date at job start Tue Mar 31 2020 01:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47400 * 2 1 4 4 H 1.08999 * 109.47145 * 174.23713 * 3 2 1 5 5 C 1.50703 * 109.46650 * 54.23758 * 3 2 1 6 6 H 1.07996 * 119.99732 * 239.99361 * 5 3 2 7 7 C 1.37878 * 120.00115 * 60.00504 * 5 3 2 8 8 N 1.31513 * 119.99990 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99815 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47489 * 59.99799 * 9 7 5 11 11 H 1.48502 * 109.46888 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47040 * 299.99341 * 9 7 5 13 13 N 1.46894 * 109.46903 * 294.23745 * 3 2 1 14 14 C 1.46896 * 111.00377 * 275.12222 * 13 3 2 15 15 C 1.53013 * 109.46657 * 274.81377 * 14 13 3 16 16 C 1.53056 * 109.43474 * 179.60130 * 15 14 13 17 17 C 1.52629 * 109.55409 * 59.35177 * 16 15 14 18 18 C 1.54167 * 109.77948 * 62.28348 * 17 16 15 19 19 C 1.54700 * 101.69454 * 144.29251 * 18 17 16 20 20 C 1.51314 * 104.20770 * 335.48847 * 19 18 17 21 21 O 1.21284 * 124.94853 * 196.20169 * 20 19 18 22 22 N 1.34520 * 110.10106 * 16.20483 * 20 19 18 23 23 C 1.52627 * 110.44730 * 301.10654 * 17 16 15 24 24 C 1.53003 * 109.47348 * 154.79367 * 14 13 3 25 25 H 1.08996 * 109.47163 * 178.66218 * 1 2 3 26 26 H 1.08999 * 109.46395 * 58.66666 * 1 2 3 27 27 H 1.08996 * 109.47054 * 298.66626 * 1 2 3 28 28 H 1.09007 * 109.47034 * 120.00065 * 2 1 3 29 29 H 1.09004 * 109.47073 * 239.99577 * 2 1 3 30 30 H 0.97001 * 120.00157 * 180.02562 * 8 7 5 31 31 H 1.00897 * 111.00459 * 39.07779 * 13 3 2 32 32 H 1.09000 * 109.46662 * 34.79856 * 14 13 3 33 33 H 1.09004 * 109.47375 * 299.58903 * 15 14 13 34 34 H 1.09001 * 109.47960 * 59.61229 * 15 14 13 35 35 H 1.08990 * 109.45928 * 299.32559 * 16 15 14 36 36 H 1.09004 * 109.44419 * 179.36649 * 16 15 14 37 37 H 1.09000 * 110.98522 * 262.40195 * 18 17 16 38 38 H 1.09003 * 110.97942 * 26.19855 * 18 17 16 39 39 H 1.08994 * 110.48578 * 216.80435 * 19 18 17 40 40 H 1.09003 * 110.58968 * 94.22366 * 19 18 17 41 41 H 0.97000 * 124.40374 * 180.16904 * 22 20 19 42 42 H 1.08994 * 109.45879 * 298.86586 * 23 17 16 43 43 H 1.09007 * 109.45510 * 178.91902 * 23 17 16 44 44 H 1.09004 * 109.47531 * 300.38628 * 24 14 13 45 45 H 1.09004 * 109.48010 * 60.39788 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1252 1.4442 0.1032 5 6 1.4246 2.1928 1.1530 6 1 0.8174 3.0661 0.9662 7 6 1.6370 1.7645 2.4462 8 7 2.3762 0.7008 2.6736 9 14 0.8747 2.6950 3.8753 10 1 -0.6037 2.6932 3.7350 11 1 1.2510 2.0363 5.1519 12 1 1.3703 4.0949 3.8752 13 7 1.6673 2.0936 -1.2629 14 6 2.6536 1.8085 -2.3135 15 6 3.8052 2.8115 -2.2174 16 6 4.8373 2.5076 -3.3061 17 6 4.1757 2.6032 -4.6782 18 6 3.6667 4.0393 -4.9131 19 6 3.9205 4.2179 -6.4287 20 6 5.0329 3.2396 -6.7368 21 8 5.7155 3.2569 -7.7392 22 7 5.1544 2.3478 -5.7370 23 6 3.0123 1.6203 -4.7788 24 6 1.9864 1.9272 -3.6852 25 1 -0.3633 -1.0273 -0.0240 26 1 -0.3632 0.5344 -0.8778 27 1 -0.3633 0.4930 0.9017 28 1 1.8934 -0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 2.5253 0.3992 3.5834 31 1 0.7409 1.8178 -1.5523 32 1 3.0405 0.7978 -2.1839 33 1 3.4195 3.8218 -2.3540 34 1 4.2762 2.7315 -1.2377 35 1 5.2313 1.5016 -3.1623 36 1 5.6522 3.2289 -3.2450 37 1 2.6043 4.1195 -4.6830 38 1 4.2455 4.7582 -4.3331 39 1 4.2388 5.2378 -6.6445 40 1 3.0254 3.9698 -6.9991 41 1 5.8055 1.6290 -5.7198 42 1 3.3841 0.6035 -4.6529 43 1 2.5402 1.7155 -5.7567 44 1 1.1618 1.2173 -3.7509 45 1 1.6056 2.9399 -3.8178 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154130.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:09 Heat of formation + Delta-G solvation = -75.285595 kcal Electronic energy + Delta-G solvation = -23115.247762 eV Core-core repulsion = 19937.460497 eV Total energy + Delta-G solvation = -3177.787265 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.97660 -39.58838 -38.03204 -35.92295 -33.79725 -32.27918 -31.99269 -31.72956 -29.08440 -27.46905 -25.34812 -24.74702 -23.65462 -22.53743 -21.46707 -20.86830 -19.84322 -18.24967 -17.96029 -17.15873 -16.73732 -16.62016 -16.17907 -15.44262 -15.24981 -15.06824 -14.83558 -14.53141 -14.39981 -14.10479 -13.79489 -13.56779 -13.43353 -13.40458 -13.07567 -12.82801 -12.72141 -12.42833 -12.24049 -12.15932 -11.98018 -11.89883 -11.69073 -11.62815 -11.46382 -11.23222 -10.96177 -10.87320 -10.84236 -10.37620 -10.04131 -8.82111 -8.00943 -6.08450 1.46535 1.47096 1.54009 1.57687 2.37151 2.49155 3.28436 3.33326 3.54859 3.71800 3.72953 4.00738 4.10203 4.22620 4.33062 4.38684 4.47411 4.58742 4.60481 4.61820 4.66922 4.77637 4.79914 4.87350 4.92219 5.02192 5.09101 5.12960 5.15941 5.21046 5.28735 5.35988 5.43961 5.48039 5.54236 5.58561 5.72970 5.79881 5.87897 5.94714 6.08331 6.39902 6.78735 6.98728 7.08801 7.25738 7.59774 9.04076 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.033428 B = 0.003787 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.420002 B = 7391.032317 C = 7625.021576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.139 4.139 3 C 0.225 3.775 4 H -0.004 1.004 5 C -0.496 4.496 6 H 0.054 0.946 7 C 0.013 3.987 8 N -0.923 5.923 9 Si 0.946 3.054 10 H -0.272 1.272 11 H -0.291 1.291 12 H -0.276 1.276 13 N -0.681 5.681 14 C 0.086 3.914 15 C -0.095 4.095 16 C -0.110 4.110 17 C 0.164 3.836 18 C -0.122 4.122 19 C -0.149 4.149 20 C 0.513 3.487 21 O -0.592 6.592 22 N -0.714 5.714 23 C -0.111 4.111 24 C -0.109 4.109 25 H 0.039 0.961 26 H 0.053 0.947 27 H 0.040 0.960 28 H 0.056 0.944 29 H 0.023 0.977 30 H 0.256 0.744 31 H 0.332 0.668 32 H 0.015 0.985 33 H 0.077 0.923 34 H 0.034 0.966 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.111 0.889 40 H 0.121 0.879 41 H 0.410 0.590 42 H 0.061 0.939 43 H 0.082 0.918 44 H 0.067 0.933 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.165 3.621 -14.763 15.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.179 4.179 3 C 0.116 3.884 4 H 0.014 0.986 5 C -0.534 4.534 6 H 0.072 0.928 7 C -0.185 4.185 8 N -0.563 5.563 9 Si 0.773 3.227 10 H -0.197 1.197 11 H -0.217 1.217 12 H -0.201 1.201 13 N -0.312 5.312 14 C -0.024 4.024 15 C -0.133 4.133 16 C -0.149 4.149 17 C 0.078 3.922 18 C -0.159 4.159 19 C -0.188 4.188 20 C 0.301 3.699 21 O -0.473 6.473 22 N -0.366 5.366 23 C -0.150 4.150 24 C -0.147 4.147 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.041 0.959 30 H 0.066 0.934 31 H 0.152 0.848 32 H 0.033 0.967 33 H 0.096 0.904 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.129 0.871 38 H 0.107 0.893 39 H 0.129 0.871 40 H 0.139 0.861 41 H 0.248 0.752 42 H 0.080 0.920 43 H 0.101 0.899 44 H 0.086 0.914 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.446 4.229 -14.954 15.547 hybrid contribution 0.169 -1.329 1.219 1.811 sum 0.615 2.900 -13.735 14.051 Atomic orbital electron populations 1.21441 0.95925 0.99172 1.00987 1.21962 0.96491 1.00432 0.98990 1.18891 0.93480 0.89021 0.86977 0.98560 1.21304 1.30011 1.11264 0.90872 0.92780 1.25567 0.96099 0.95883 1.00968 1.70012 1.40439 1.25339 1.20557 0.85787 0.79120 0.78855 0.78894 1.19688 1.21715 1.20105 1.60723 1.04681 1.62734 1.03088 1.21514 0.93524 0.95806 0.91565 1.21386 0.94934 1.00194 0.96833 1.21687 0.98111 1.02289 0.92831 1.20746 0.88255 0.96667 0.86510 1.22822 1.04557 0.94140 0.94410 1.22419 0.98166 1.00113 0.98151 1.21523 0.84259 0.82693 0.81386 1.90716 1.50996 1.75497 1.30140 1.46390 1.36725 1.32438 1.21023 1.21732 0.95082 0.98758 0.99476 1.21703 0.97527 1.03470 0.91993 0.94186 0.92854 0.94100 0.92535 0.95856 0.93448 0.84826 0.96725 0.90414 0.94668 0.92180 0.90745 0.87084 0.89336 0.87116 0.86094 0.75154 0.92005 0.89917 0.91448 0.89343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.67 9.39 71.98 0.68 -4.00 16 2 C -0.14 -6.23 5.48 30.60 0.17 -6.06 16 3 C 0.23 10.54 2.14 44.17 0.09 10.64 16 4 H 0.00 -0.19 7.13 -2.39 -0.02 -0.21 16 5 C -0.50 -25.82 7.35 25.60 0.19 -25.63 16 6 H 0.05 2.84 7.81 -2.91 -0.02 2.81 16 7 C 0.01 0.68 5.23 84.66 0.44 1.12 16 8 N -0.92 -51.87 11.38 21.45 0.24 -51.63 16 9 Si 0.95 42.81 29.54 68.60 2.03 44.84 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 13 N -0.68 -25.19 6.04 -473.30 -2.86 -28.05 16 14 C 0.09 2.54 2.28 44.92 0.10 2.64 16 15 C -0.09 -2.63 5.21 30.62 0.16 -2.47 16 16 C -0.11 -2.34 4.96 30.49 0.15 -2.19 16 17 C 0.16 2.86 0.91 3.76 0.00 2.87 16 18 C -0.12 -1.76 4.92 31.57 0.16 -1.60 16 19 C -0.15 -2.18 6.86 30.62 0.21 -1.97 16 20 C 0.51 11.46 8.44 87.89 0.74 12.20 16 21 O -0.59 -18.64 18.03 -3.04 -0.05 -18.69 16 22 N -0.71 -13.39 5.53 -422.02 -2.33 -15.72 16 23 C -0.11 -1.93 5.07 30.49 0.15 -1.78 16 24 C -0.11 -2.24 4.98 30.61 0.15 -2.09 16 25 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.05 1.83 6.42 -2.39 -0.02 1.82 16 27 H 0.04 1.82 7.05 -2.39 -0.02 1.80 16 28 H 0.06 2.94 6.25 -2.38 -0.01 2.93 16 29 H 0.02 0.95 7.36 -2.38 -0.02 0.93 16 30 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 31 H 0.33 11.50 6.19 -89.70 -0.56 10.94 16 32 H 0.01 0.50 7.09 -2.39 -0.02 0.48 16 33 H 0.08 2.03 7.29 -2.39 -0.02 2.01 16 34 H 0.03 1.22 7.43 -2.39 -0.02 1.21 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.07 1.49 8.12 -2.38 -0.02 1.48 16 37 H 0.11 1.39 5.91 -2.39 -0.01 1.37 16 38 H 0.09 1.27 7.82 -2.39 -0.02 1.25 16 39 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.41 7.20 8.96 -92.71 -0.83 6.37 16 42 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 44 H 0.07 1.37 8.12 -2.38 -0.02 1.35 16 45 H 0.09 1.62 6.22 -2.39 -0.01 1.60 16 Total: -1.00 -63.67 337.39 0.03 -63.64 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: -0.40 Total: 23.94 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: 3.40 Total: -18.33 kcal Atomic # 7 Polarization: -90.46 SS G_CDS: -4.95 Total: -95.40 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.05 Total: -18.69 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -63.67 0.03 -63.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154130.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.643 kcal (2) G-P(sol) polarization free energy of solvation -63.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds