Wall clock time and date at job start Tue Mar 31 2020 01:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47081 * 2 1 4 4 H 1.08995 * 109.47056 * 305.64980 * 3 2 1 5 5 C 1.50705 * 109.46903 * 185.64704 * 3 2 1 6 6 H 1.07995 * 119.99934 * 240.00434 * 5 3 2 7 7 C 1.37880 * 119.99916 * 60.00207 * 5 3 2 8 8 N 1.31513 * 119.99890 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00138 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47032 * 89.99982 * 9 7 5 11 11 H 1.48492 * 109.47145 * 210.00386 * 9 7 5 12 12 H 1.48498 * 109.46834 * 330.00269 * 9 7 5 13 13 N 1.46902 * 109.46808 * 65.65024 * 3 2 1 14 14 C 1.46894 * 110.99805 * 205.91432 * 13 3 2 15 15 H 1.09005 * 110.89272 * 328.03921 * 14 13 3 16 16 C 1.55161 * 111.00420 * 91.95762 * 14 13 3 17 17 C 1.54335 * 103.02012 * 153.37969 * 16 14 13 18 18 N 1.47019 * 107.26922 * 338.14309 * 17 16 14 19 19 C 1.34772 * 125.64850 * 178.85000 * 18 17 16 20 20 O 1.21290 * 120.00032 * 179.69154 * 19 18 17 21 21 C 1.50694 * 120.00047 * 359.96677 * 19 18 17 22 22 C 1.53781 * 113.61495 * 278.85949 * 21 19 18 23 23 C 1.53953 * 87.02192 * 220.04948 * 22 21 19 24 24 C 1.53777 * 87.11150 * 25.36322 * 23 22 21 25 25 C 1.47426 * 108.69968 * 358.58517 * 18 17 16 26 26 H 1.09007 * 109.46882 * 294.39329 * 1 2 3 27 27 H 1.09000 * 109.47357 * 54.38583 * 1 2 3 28 28 H 1.09002 * 109.47682 * 174.39001 * 1 2 3 29 29 H 1.09002 * 109.46709 * 240.00080 * 2 1 3 30 30 H 1.08994 * 109.47218 * 120.00504 * 2 1 3 31 31 H 0.97005 * 120.00373 * 179.97438 * 8 7 5 32 32 H 1.00893 * 111.00210 * 329.87103 * 13 3 2 33 33 H 1.08996 * 110.72117 * 271.94508 * 16 14 13 34 34 H 1.08998 * 110.71556 * 35.03713 * 16 14 13 35 35 H 1.08995 * 109.98988 * 218.66614 * 17 16 14 36 36 H 1.09008 * 109.77582 * 97.50303 * 17 16 14 37 37 H 1.08994 * 112.85331 * 50.05800 * 21 19 18 38 38 H 1.08996 * 113.61659 * 334.56950 * 22 21 19 39 39 H 1.09006 * 113.61485 * 105.46887 * 22 21 19 40 40 H 1.09009 * 113.53664 * 270.81263 * 23 22 21 41 41 H 1.09000 * 113.74635 * 139.94638 * 23 22 21 42 42 H 1.09001 * 113.61640 * 220.09242 * 24 23 22 43 43 H 1.09002 * 113.61388 * 89.18470 * 24 23 22 44 44 H 1.09008 * 110.36448 * 143.19576 * 25 18 17 45 45 H 1.09001 * 110.36829 * 265.40366 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 -0.8350 5 6 3.5405 1.4448 -0.1398 6 1 4.1540 1.8863 0.6315 7 6 4.1301 0.8830 -1.2525 8 7 3.3829 0.3457 -2.1919 9 14 5.9900 0.8864 -1.4262 10 1 6.5464 -0.3473 -0.8152 11 1 6.3526 0.9331 -2.8654 12 1 6.5494 2.0763 -0.7359 13 7 1.6648 2.0945 1.2618 14 6 1.5630 3.5500 1.0923 15 1 2.2705 3.9045 0.3426 16 6 0.1130 3.9679 0.7311 17 6 0.0266 5.4155 1.2590 18 7 1.0685 5.5690 2.2848 19 6 1.3339 6.6975 2.9721 20 8 2.2173 6.7078 3.8031 21 6 0.5290 7.9447 2.7126 22 6 0.9941 8.7318 1.4761 23 6 0.7516 10.0106 2.2984 24 6 0.9750 9.1520 3.5544 25 6 1.7705 4.2821 2.4416 26 1 -0.3633 0.4245 0.9360 27 1 -0.3634 0.5984 -0.8354 28 1 -0.3634 -1.0227 -0.1005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.7976 -0.0491 -2.9749 32 1 0.8048 1.7117 1.6249 33 1 -0.0394 3.9385 -0.3478 34 1 -0.6100 3.3294 1.2388 35 1 -0.9550 5.5941 1.6979 36 1 0.2033 6.1167 0.4433 37 1 -0.5461 7.7677 2.7385 38 1 2.0414 8.5679 1.2226 39 1 0.3291 8.6304 0.6184 40 1 -0.2630 10.3992 2.2098 41 1 1.5126 10.7772 2.1525 42 1 0.2945 9.3892 4.3722 43 1 2.0171 9.1030 3.8702 44 1 2.8323 4.4490 2.6233 45 1 1.3324 3.7079 3.2580 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255160004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:37 Heat of formation + Delta-G solvation = -21.537439 kcal Electronic energy + Delta-G solvation = -22606.123677 eV Core-core repulsion = 19430.667107 eV Total energy + Delta-G solvation = -3175.456570 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.38029 -38.44053 -36.98587 -35.63252 -32.59977 -31.41587 -29.67666 -28.47041 -26.78266 -25.85178 -25.55522 -23.09603 -22.65598 -20.54945 -20.11022 -19.62820 -18.88720 -17.34321 -16.30191 -16.08880 -15.67716 -15.39399 -14.88760 -14.35367 -14.08780 -13.70692 -13.45399 -13.01276 -12.85146 -12.66514 -12.62769 -12.47902 -12.17135 -11.97266 -11.92381 -11.56990 -11.32509 -11.22188 -11.04220 -10.81358 -10.73190 -10.62744 -10.58313 -10.42486 -9.98723 -9.78029 -9.69710 -9.50598 -9.13061 -8.47635 -8.37005 -7.31420 -5.99657 -4.03844 2.71131 3.10702 3.32251 3.38775 3.43681 4.33424 4.41622 4.43445 4.49847 4.62715 4.72337 4.84671 5.05164 5.14580 5.27025 5.35762 5.36565 5.47497 5.57792 5.60710 5.67891 5.75949 5.76953 5.82288 5.91629 6.00612 6.10523 6.11731 6.12188 6.21996 6.32676 6.37871 6.43376 6.59882 6.79167 7.02637 7.11728 7.43315 7.67466 7.73445 7.89233 8.21792 8.29023 8.35070 8.68554 9.04531 9.61711 11.05516 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020187 B = 0.004064 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.709014 B = 6887.689393 C = 7610.874995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.222 3.778 4 H 0.005 0.995 5 C -0.496 4.496 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.675 5.675 14 C 0.091 3.909 15 H 0.096 0.904 16 C -0.165 4.165 17 C 0.107 3.893 18 N -0.615 5.615 19 C 0.535 3.465 20 O -0.544 6.544 21 C -0.134 4.134 22 C -0.123 4.123 23 C -0.142 4.142 24 C -0.118 4.118 25 C 0.113 3.887 26 H 0.034 0.966 27 H 0.042 0.958 28 H 0.037 0.963 29 H 0.100 0.900 30 H 0.041 0.959 31 H 0.259 0.741 32 H 0.321 0.679 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.094 0.906 44 H 0.079 0.921 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.353 13.289 5.230 17.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C 0.115 3.885 4 H 0.022 0.978 5 C -0.534 4.534 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.305 5.305 14 C -0.021 4.021 15 H 0.114 0.886 16 C -0.204 4.204 17 C -0.017 4.017 18 N -0.349 5.349 19 C 0.323 3.677 20 O -0.422 6.422 21 C -0.155 4.155 22 C -0.161 4.161 23 C -0.179 4.179 24 C -0.156 4.156 25 C -0.010 4.010 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.118 0.882 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.140 0.860 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.127 0.873 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.113 0.887 44 H 0.097 0.903 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.180 13.263 5.768 17.130 hybrid contribution -0.038 -0.145 -0.776 0.790 sum -9.218 13.118 4.992 16.792 Atomic orbital electron populations 1.21881 0.99579 0.99779 0.99447 1.21785 0.91232 1.00337 1.03205 1.19175 0.95482 0.89921 0.83965 0.97778 1.21236 0.91271 1.36635 1.04290 0.92008 1.24942 0.98100 0.95565 0.95813 1.69866 1.34691 1.39498 1.09559 0.86557 0.85790 0.78495 0.76936 1.20731 1.21437 1.19955 1.60537 1.36654 1.00479 1.32813 1.22624 0.93826 0.90507 0.95180 0.88558 1.23433 1.00249 0.94800 1.01959 1.21956 0.90781 0.98226 0.90722 1.48534 1.35918 1.11105 1.39343 1.20141 0.83982 0.83264 0.80289 1.90686 1.33044 1.84233 1.34230 1.22753 1.00491 0.92339 0.99957 1.22843 1.02299 0.95233 0.95715 1.22858 1.02029 0.96556 0.96462 1.22803 1.03110 0.93223 0.96428 1.22281 0.97879 0.82310 0.98481 0.94686 0.93869 0.94373 0.88163 0.93992 0.93076 0.86040 0.90080 0.90925 0.91937 0.91514 0.87289 0.89588 0.90709 0.90012 0.91006 0.91164 0.88713 0.90276 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.65 37.16 0.36 -2.35 16 2 C -0.13 -2.86 5.35 -26.73 -0.14 -3.00 16 3 C 0.22 5.20 1.90 -68.86 -0.13 5.07 16 4 H 0.00 0.12 7.84 -51.93 -0.41 -0.29 16 5 C -0.50 -13.30 8.60 -34.44 -0.30 -13.59 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.06 1.52 5.29 -17.82 -0.09 1.43 16 8 N -0.90 -24.84 11.29 55.43 0.63 -24.22 16 9 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.67 -13.34 6.20 -98.71 -0.61 -13.96 16 14 C 0.09 1.59 3.12 -65.57 -0.20 1.38 16 15 H 0.10 1.94 7.75 -51.93 -0.40 1.53 16 16 C -0.16 -2.24 6.55 -24.89 -0.16 -2.40 16 17 C 0.11 1.26 6.47 -3.06 -0.02 1.24 16 18 N -0.62 -8.97 3.33 -170.51 -0.57 -9.54 16 19 C 0.53 8.03 7.37 -10.99 -0.08 7.95 16 20 O -0.54 -10.27 16.17 5.55 0.09 -10.18 16 21 C -0.13 -1.44 3.34 -90.96 -0.30 -1.74 16 22 C -0.12 -1.15 7.64 -25.83 -0.20 -1.35 16 23 C -0.14 -1.13 8.09 -25.83 -0.21 -1.34 16 24 C -0.12 -1.18 7.40 -25.92 -0.19 -1.37 16 25 C 0.11 1.89 6.60 -2.53 -0.02 1.88 16 26 H 0.03 0.56 6.65 -51.92 -0.35 0.21 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.10 2.57 5.94 -51.93 -0.31 2.26 16 30 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.32 5.74 6.06 -39.30 -0.24 5.51 16 33 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.07 0.93 7.75 -51.93 -0.40 0.53 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 37 H 0.11 0.96 8.12 -51.93 -0.42 0.54 16 38 H 0.09 0.92 8.09 -51.93 -0.42 0.50 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 1.13 7.45 -51.93 -0.39 0.74 16 44 H 0.08 1.49 8.04 -51.92 -0.42 1.07 16 45 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 354.61 15.07 5.34 5.34 Total: -1.00 -29.52 354.61 -9.78 -39.30 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -7.95 Total: 5.13 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -1.69 Total: -8.21 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: -0.55 Total: -47.71 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.52 -9.78 -39.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.765 kcal (2) G-P(sol) polarization free energy of solvation -29.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds