Wall clock time and date at job start Tue Mar 31 2020 01:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47081 * 2 1 4 4 H 1.08995 * 109.47056 * 305.64980 * 3 2 1 5 5 C 1.50705 * 109.46903 * 185.64704 * 3 2 1 6 6 H 1.07995 * 119.99934 * 240.00434 * 5 3 2 7 7 C 1.37880 * 119.99916 * 60.00207 * 5 3 2 8 8 N 1.31513 * 119.99890 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00138 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47032 * 89.99982 * 9 7 5 11 11 H 1.48492 * 109.47145 * 210.00386 * 9 7 5 12 12 H 1.48498 * 109.46834 * 330.00269 * 9 7 5 13 13 N 1.46902 * 109.46808 * 65.65024 * 3 2 1 14 14 C 1.46894 * 110.99805 * 205.91432 * 13 3 2 15 15 H 1.09005 * 110.89272 * 328.03921 * 14 13 3 16 16 C 1.55161 * 111.00420 * 91.95762 * 14 13 3 17 17 C 1.54335 * 103.02012 * 153.37969 * 16 14 13 18 18 N 1.47019 * 107.26922 * 338.14309 * 17 16 14 19 19 C 1.34772 * 125.64850 * 178.85000 * 18 17 16 20 20 O 1.21290 * 120.00032 * 179.69154 * 19 18 17 21 21 C 1.50694 * 120.00047 * 359.96677 * 19 18 17 22 22 C 1.53781 * 113.61495 * 278.85949 * 21 19 18 23 23 C 1.53953 * 87.02192 * 220.04948 * 22 21 19 24 24 C 1.53777 * 87.11150 * 25.36322 * 23 22 21 25 25 C 1.47426 * 108.69968 * 358.58517 * 18 17 16 26 26 H 1.09007 * 109.46882 * 294.39329 * 1 2 3 27 27 H 1.09000 * 109.47357 * 54.38583 * 1 2 3 28 28 H 1.09002 * 109.47682 * 174.39001 * 1 2 3 29 29 H 1.09002 * 109.46709 * 240.00080 * 2 1 3 30 30 H 1.08994 * 109.47218 * 120.00504 * 2 1 3 31 31 H 0.97005 * 120.00373 * 179.97438 * 8 7 5 32 32 H 1.00893 * 111.00210 * 329.87103 * 13 3 2 33 33 H 1.08996 * 110.72117 * 271.94508 * 16 14 13 34 34 H 1.08998 * 110.71556 * 35.03713 * 16 14 13 35 35 H 1.08995 * 109.98988 * 218.66614 * 17 16 14 36 36 H 1.09008 * 109.77582 * 97.50303 * 17 16 14 37 37 H 1.08994 * 112.85331 * 50.05800 * 21 19 18 38 38 H 1.08996 * 113.61659 * 334.56950 * 22 21 19 39 39 H 1.09006 * 113.61485 * 105.46887 * 22 21 19 40 40 H 1.09009 * 113.53664 * 270.81263 * 23 22 21 41 41 H 1.09000 * 113.74635 * 139.94638 * 23 22 21 42 42 H 1.09001 * 113.61640 * 220.09242 * 24 23 22 43 43 H 1.09002 * 113.61388 * 89.18470 * 24 23 22 44 44 H 1.09008 * 110.36448 * 143.19576 * 25 18 17 45 45 H 1.09001 * 110.36829 * 265.40366 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 -0.8350 5 6 3.5405 1.4448 -0.1398 6 1 4.1540 1.8863 0.6315 7 6 4.1301 0.8830 -1.2525 8 7 3.3829 0.3457 -2.1919 9 14 5.9900 0.8864 -1.4262 10 1 6.5464 -0.3473 -0.8152 11 1 6.3526 0.9331 -2.8654 12 1 6.5494 2.0763 -0.7359 13 7 1.6648 2.0945 1.2618 14 6 1.5630 3.5500 1.0923 15 1 2.2705 3.9045 0.3426 16 6 0.1130 3.9679 0.7311 17 6 0.0266 5.4155 1.2590 18 7 1.0685 5.5690 2.2848 19 6 1.3339 6.6975 2.9721 20 8 2.2173 6.7078 3.8031 21 6 0.5290 7.9447 2.7126 22 6 0.9941 8.7318 1.4761 23 6 0.7516 10.0106 2.2984 24 6 0.9750 9.1520 3.5544 25 6 1.7705 4.2821 2.4416 26 1 -0.3633 0.4245 0.9360 27 1 -0.3634 0.5984 -0.8354 28 1 -0.3634 -1.0227 -0.1005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.7976 -0.0491 -2.9749 32 1 0.8048 1.7117 1.6249 33 1 -0.0394 3.9385 -0.3478 34 1 -0.6100 3.3294 1.2388 35 1 -0.9550 5.5941 1.6979 36 1 0.2033 6.1167 0.4433 37 1 -0.5461 7.7677 2.7385 38 1 2.0414 8.5679 1.2226 39 1 0.3291 8.6304 0.6184 40 1 -0.2630 10.3992 2.2098 41 1 1.5126 10.7772 2.1525 42 1 0.2945 9.3892 4.3722 43 1 2.0171 9.1030 3.8702 44 1 2.8323 4.4490 2.6233 45 1 1.3324 3.7079 3.2580 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255160004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:36 Heat of formation + Delta-G solvation = -39.708524 kcal Electronic energy + Delta-G solvation = -22606.911634 eV Core-core repulsion = 19430.667107 eV Total energy + Delta-G solvation = -3176.244527 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.46907 -39.60145 -38.15941 -37.21866 -34.40130 -33.08213 -30.96481 -29.77356 -28.35106 -26.97196 -26.50749 -24.66393 -23.97022 -21.82342 -21.53329 -21.01735 -19.86439 -18.44814 -18.27117 -17.44011 -16.79011 -16.65390 -16.26569 -15.94568 -15.46860 -15.13405 -14.68819 -14.50707 -14.16975 -13.99995 -13.66866 -13.49539 -13.41831 -13.37652 -13.11771 -12.92518 -12.82889 -12.77745 -12.52684 -12.39365 -12.11293 -11.97220 -11.78579 -11.52996 -11.43533 -11.37913 -11.27992 -11.02306 -10.72126 -10.42726 -9.68049 -8.97473 -8.07547 -6.18626 1.38798 1.40757 1.50201 1.57012 1.96169 2.42946 3.17515 3.39240 3.50089 3.62984 3.69414 3.74516 3.91644 3.94296 4.12196 4.23004 4.32592 4.44880 4.54900 4.61267 4.66873 4.68578 4.73870 4.78561 4.80077 4.86763 4.91268 5.02498 5.06107 5.09087 5.12865 5.17660 5.18885 5.24028 5.30947 5.40062 5.53834 5.63002 5.76215 5.91831 6.36465 6.50031 6.55277 6.94915 7.00719 7.12722 7.50490 8.94769 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020187 B = 0.004064 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.709014 B = 6887.689393 C = 7610.874995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.123 4.123 3 C 0.232 3.768 4 H -0.020 1.020 5 C -0.515 4.515 6 H 0.042 0.958 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.947 3.053 10 H -0.277 1.277 11 H -0.281 1.281 12 H -0.278 1.278 13 N -0.680 5.680 14 C 0.089 3.911 15 H 0.061 0.939 16 C -0.153 4.153 17 C 0.109 3.891 18 N -0.616 5.616 19 C 0.526 3.474 20 O -0.595 6.595 21 C -0.129 4.129 22 C -0.124 4.124 23 C -0.126 4.126 24 C -0.126 4.126 25 C 0.121 3.879 26 H 0.060 0.940 27 H 0.041 0.959 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.033 0.967 31 H 0.260 0.740 32 H 0.335 0.665 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.141 0.859 38 H 0.062 0.938 39 H 0.097 0.903 40 H 0.108 0.892 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.065 0.935 44 H 0.045 0.955 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.971 14.530 5.144 20.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.162 4.162 3 C 0.124 3.876 4 H -0.002 1.002 5 C -0.554 4.554 6 H 0.061 0.939 7 C -0.183 4.183 8 N -0.555 5.555 9 Si 0.774 3.226 10 H -0.203 1.203 11 H -0.207 1.207 12 H -0.204 1.204 13 N -0.312 5.312 14 C -0.023 4.023 15 H 0.079 0.921 16 C -0.192 4.192 17 C -0.013 4.013 18 N -0.349 5.349 19 C 0.316 3.684 20 O -0.476 6.476 21 C -0.150 4.150 22 C -0.161 4.161 23 C -0.163 4.163 24 C -0.164 4.164 25 C -0.003 4.003 26 H 0.078 0.922 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.155 0.845 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.118 0.882 36 H 0.101 0.899 37 H 0.159 0.841 38 H 0.081 0.919 39 H 0.116 0.884 40 H 0.127 0.873 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.084 0.916 44 H 0.064 0.936 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.830 14.511 5.668 19.562 hybrid contribution 0.821 -0.531 -0.719 1.214 sum -11.009 13.980 4.949 18.470 Atomic orbital electron populations 1.21738 0.95845 1.01150 1.00757 1.21609 0.94579 0.98879 1.01107 1.18874 0.93472 0.90634 0.84587 1.00192 1.21503 0.93308 1.36600 1.03986 0.93945 1.25554 1.01663 0.95405 0.95674 1.69970 1.35907 1.39831 1.09772 0.85724 0.81589 0.78238 0.77046 1.20280 1.20661 1.20366 1.60335 1.37859 1.01854 1.31107 1.22446 0.96066 0.89050 0.94718 0.92098 1.23324 0.97143 0.96380 1.02394 1.22151 0.91457 0.97117 0.90602 1.48639 1.36177 1.10180 1.39865 1.21078 0.83697 0.84282 0.79299 1.90660 1.35356 1.85054 1.36498 1.22934 1.01330 0.89805 1.00904 1.22860 1.01445 0.95680 0.96153 1.22842 1.03646 0.95755 0.94055 1.22820 1.01757 0.93868 0.97927 1.21994 0.96406 0.83798 0.98105 0.92159 0.93958 0.92726 0.91448 0.94815 0.93030 0.84523 0.89954 0.89196 0.88235 0.89877 0.84124 0.91911 0.88411 0.87341 0.90711 0.89763 0.91645 0.93643 0.91111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.73 9.65 71.98 0.69 -4.03 16 2 C -0.12 -5.56 5.35 30.59 0.16 -5.39 16 3 C 0.23 11.13 1.90 44.17 0.08 11.21 16 4 H -0.02 -1.02 7.84 -2.39 -0.02 -1.03 16 5 C -0.52 -28.60 8.60 25.60 0.22 -28.38 16 6 H 0.04 2.46 7.81 -2.91 -0.02 2.43 16 7 C 0.02 0.86 5.29 84.66 0.45 1.31 16 8 N -0.91 -51.63 11.29 21.45 0.24 -51.39 16 9 Si 0.95 44.66 29.54 68.60 2.03 46.68 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 13 N -0.68 -27.10 6.20 -466.20 -2.89 -29.99 16 14 C 0.09 3.14 3.12 46.31 0.14 3.29 16 15 H 0.06 2.57 7.75 -2.38 -0.02 2.56 16 16 C -0.15 -3.83 6.55 31.79 0.21 -3.62 16 17 C 0.11 2.21 6.47 86.73 0.56 2.78 16 18 N -0.62 -17.35 3.33 -811.77 -2.70 -20.05 16 19 C 0.53 15.53 7.37 87.66 0.65 16.18 16 20 O -0.59 -23.25 16.17 -3.06 -0.05 -23.30 16 21 C -0.13 -2.45 3.34 -11.01 -0.04 -2.48 16 22 C -0.12 -2.00 7.64 31.18 0.24 -1.76 16 23 C -0.13 -1.63 8.09 31.18 0.25 -1.38 16 24 C -0.13 -2.32 7.40 31.12 0.23 -2.09 16 25 C 0.12 4.12 6.60 86.85 0.57 4.69 16 26 H 0.06 1.76 6.65 -2.38 -0.02 1.74 16 27 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.07 3.51 5.94 -2.39 -0.01 3.50 16 30 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.26 14.07 8.31 -92.70 -0.77 13.30 16 32 H 0.33 11.55 6.06 -89.70 -0.54 11.00 16 33 H 0.08 2.08 8.14 -2.39 -0.02 2.07 16 34 H 0.09 1.98 7.75 -2.39 -0.02 1.96 16 35 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 37 H 0.14 1.82 8.12 -2.39 -0.02 1.80 16 38 H 0.06 1.31 8.09 -2.39 -0.02 1.29 16 39 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 40 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 41 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.06 1.60 7.45 -2.39 -0.02 1.58 16 44 H 0.04 1.83 8.04 -2.38 -0.02 1.81 16 45 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -67.93 354.61 1.46 -66.46 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.41 Total: 21.26 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: 4.43 Total: -9.68 kcal Atomic # 7 Polarization: -96.08 SS G_CDS: -5.35 Total: -101.43 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.05 Total: -23.30 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -67.93 1.46 -66.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.755 kcal (2) G-P(sol) polarization free energy of solvation -67.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds