Wall clock time and date at job start Tue Mar 31 2020 01:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46909 * 2 1 4 4 H 1.08997 * 109.47005 * 55.05258 * 3 2 1 5 5 C 1.50706 * 109.46926 * 175.05031 * 3 2 1 6 6 H 1.08004 * 119.99511 * 120.00366 * 5 3 2 7 7 C 1.37872 * 120.00291 * 300.00189 * 5 3 2 8 8 N 1.31519 * 119.99667 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00287 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46979 * 89.99709 * 9 7 5 11 11 H 1.48499 * 109.47333 * 209.99931 * 9 7 5 12 12 H 1.48507 * 109.47024 * 330.00166 * 9 7 5 13 13 N 1.46904 * 109.47327 * 295.05075 * 3 2 1 14 14 C 1.46902 * 110.99767 * 154.47216 * 13 3 2 15 15 H 1.08996 * 110.91674 * 331.48081 * 14 13 3 16 16 C 1.55149 * 111.00464 * 95.38439 * 14 13 3 17 17 C 1.54332 * 102.94134 * 153.57132 * 16 14 13 18 18 N 1.47280 * 107.30673 * 337.82019 * 17 16 14 19 19 C 1.34773 * 125.79525 * 178.92611 * 18 17 16 20 20 O 1.21283 * 120.00231 * 180.02562 * 19 18 17 21 21 C 1.50698 * 119.99708 * 359.97438 * 19 18 17 22 22 C 1.53784 * 113.61702 * 279.14015 * 21 19 18 23 23 C 1.53954 * 87.02165 * 220.04812 * 22 21 19 24 24 C 1.53781 * 87.11112 * 25.36179 * 23 22 21 25 25 C 1.47428 * 108.55927 * 358.92145 * 18 17 16 26 26 H 1.09000 * 109.47243 * 65.53987 * 1 2 3 27 27 H 1.09003 * 109.47070 * 185.53354 * 1 2 3 28 28 H 1.08994 * 109.47648 * 305.53678 * 1 2 3 29 29 H 1.08997 * 109.47114 * 240.00320 * 2 1 3 30 30 H 1.08998 * 109.47434 * 119.99808 * 2 1 3 31 31 H 0.97001 * 119.99519 * 180.02562 * 8 7 5 32 32 H 1.00897 * 110.99593 * 30.51431 * 13 3 2 33 33 H 1.08994 * 110.72479 * 271.93706 * 16 14 13 34 34 H 1.09005 * 110.71957 * 35.03905 * 16 14 13 35 35 H 1.09004 * 109.87489 * 97.22889 * 17 16 14 36 36 H 1.08998 * 109.88281 * 218.23481 * 17 16 14 37 37 H 1.09002 * 112.84819 * 50.33769 * 21 19 18 38 38 H 1.08997 * 113.61401 * 334.56598 * 22 21 19 39 39 H 1.08999 * 113.61393 * 105.47038 * 22 21 19 40 40 H 1.08998 * 113.53748 * 270.81591 * 23 22 21 41 41 H 1.08998 * 113.74612 * 139.93874 * 23 22 21 42 42 H 1.08998 * 113.62055 * 220.08837 * 24 23 22 43 43 H 1.09001 * 113.61780 * 89.18885 * 24 23 22 44 44 H 1.08998 * 110.36806 * 265.26466 * 25 18 17 45 45 H 1.08999 * 110.36815 * 143.04750 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6060 1.9813 0.8423 5 6 3.5420 1.4443 0.1226 6 1 4.1466 1.8892 -0.6540 7 6 4.1443 0.8781 1.2260 8 7 3.4079 0.3368 2.1718 9 14 6.0060 0.8809 1.3783 10 1 6.4433 2.1137 2.0814 11 1 6.4414 -0.3104 2.1507 12 1 6.6135 0.8418 0.0237 13 7 1.6502 2.0997 -1.2547 14 6 1.5594 3.5555 -1.0803 15 1 1.2999 3.8088 -0.0524 16 6 2.8790 4.2503 -1.5081 17 6 2.4098 5.6635 -1.9138 18 7 0.9758 5.5729 -2.2376 19 6 0.1872 6.5977 -2.6175 20 8 -0.9853 6.4034 -2.8592 21 6 0.7621 7.9852 -2.7407 22 6 0.8807 8.7246 -1.3975 23 6 0.4141 9.9880 -2.1433 24 6 -0.2733 9.0473 -3.1469 25 6 0.5461 4.1718 -2.0768 26 1 -0.3634 0.4255 -0.9354 27 1 -0.3633 -1.0229 0.0991 28 1 -0.3634 0.5973 0.8362 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8317 -0.0612 2.9483 32 1 0.7828 1.7227 -1.6061 33 1 3.5768 4.3008 -0.6724 34 1 3.3302 3.7330 -2.3549 35 1 2.5593 6.3557 -1.0852 36 1 2.9682 6.0034 -2.7860 37 1 1.6741 8.0141 -3.3370 38 1 0.1744 8.3766 -0.6438 39 1 1.9025 8.7895 -1.0236 40 1 1.2315 10.5653 -2.5753 41 1 -0.2826 10.6022 -1.5728 42 1 -0.1819 9.3722 -4.1833 43 1 -1.2957 8.7876 -2.8724 44 1 0.5887 3.6499 -3.0327 45 1 -0.4630 4.1292 -1.6668 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255160005.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:39 Heat of formation + Delta-G solvation = -37.879318 kcal Electronic energy + Delta-G solvation = -22624.395871 eV Core-core repulsion = 19448.230664 eV Total energy + Delta-G solvation = -3176.165207 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.46447 -39.54714 -38.14856 -37.23088 -34.33357 -33.11904 -30.98723 -29.87244 -28.26460 -26.96479 -26.50171 -24.67822 -24.04146 -21.63787 -21.52960 -20.99691 -19.84775 -18.39757 -18.34726 -17.39011 -16.82357 -16.61948 -16.31044 -15.85294 -15.53882 -15.27444 -14.69447 -14.49800 -14.28906 -13.92360 -13.69076 -13.61469 -13.42239 -13.36545 -13.04734 -12.91675 -12.75483 -12.61373 -12.46643 -12.22970 -12.13231 -11.88282 -11.78377 -11.49494 -11.43283 -11.36022 -11.27639 -10.96063 -10.73634 -10.39180 -9.69702 -9.08667 -8.02404 -6.13091 1.44583 1.47058 1.55227 1.56508 1.93115 2.47838 3.23774 3.39092 3.54499 3.59562 3.68104 3.77392 3.87431 3.92554 4.15924 4.20955 4.33566 4.44299 4.49513 4.56206 4.66844 4.68897 4.70667 4.78982 4.81324 4.86986 4.89553 5.03018 5.08494 5.09916 5.16369 5.19266 5.21811 5.26295 5.34454 5.39787 5.53533 5.62993 5.79537 5.91222 6.38297 6.48800 6.52019 6.93118 7.00482 7.09649 7.55548 9.01564 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021869 B = 0.004063 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.072635 B = 6890.434907 C = 7777.810876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.123 4.123 3 C 0.227 3.773 4 H -0.032 1.032 5 C -0.500 4.500 6 H 0.061 0.939 7 C 0.007 3.993 8 N -0.924 5.924 9 Si 0.953 3.047 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.268 1.268 13 N -0.671 5.671 14 C 0.087 3.913 15 H 0.032 0.968 16 C -0.109 4.109 17 C 0.107 3.893 18 N -0.614 5.614 19 C 0.529 3.471 20 O -0.592 6.592 21 C -0.131 4.131 22 C -0.123 4.123 23 C -0.126 4.126 24 C -0.124 4.124 25 C 0.109 3.891 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.033 0.967 29 H 0.039 0.961 30 H 0.068 0.932 31 H 0.258 0.742 32 H 0.329 0.671 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.138 0.862 38 H 0.065 0.935 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.014 15.831 -8.584 18.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.161 4.161 3 C 0.119 3.881 4 H -0.015 1.015 5 C -0.539 4.539 6 H 0.079 0.921 7 C -0.190 4.190 8 N -0.565 5.565 9 Si 0.780 3.220 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.192 1.192 13 N -0.303 5.303 14 C -0.024 4.024 15 H 0.050 0.950 16 C -0.148 4.148 17 C -0.015 4.015 18 N -0.347 5.347 19 C 0.320 3.680 20 O -0.473 6.473 21 C -0.152 4.152 22 C -0.161 4.161 23 C -0.164 4.164 24 C -0.162 4.162 25 C -0.015 4.015 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.148 0.852 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.114 0.886 37 H 0.155 0.845 38 H 0.084 0.916 39 H 0.113 0.887 40 H 0.124 0.876 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.001 15.716 -8.812 18.128 hybrid contribution -0.096 -0.687 1.117 1.314 sum -2.098 15.029 -7.695 17.014 Atomic orbital electron populations 1.21764 0.96619 1.01077 1.00366 1.21619 0.93916 0.99235 1.01360 1.19027 0.94541 0.90393 0.84184 1.01475 1.21470 0.92274 1.35830 1.04308 0.92105 1.25684 1.02073 0.95543 0.95739 1.70019 1.36252 1.40120 1.10074 0.85621 0.81058 0.77245 0.78078 1.20321 1.21598 1.19243 1.60686 1.36145 1.01825 1.31621 1.22502 0.95254 0.89097 0.95580 0.94993 1.22563 0.96858 0.93419 1.01957 1.22293 0.79313 0.98062 1.01819 1.48626 1.11731 1.07645 1.66649 1.21011 0.85164 0.86784 0.75086 1.90649 1.18439 1.85378 1.52812 1.22936 1.02091 0.88243 1.01953 1.22861 1.03107 0.96019 0.94143 1.22839 1.00907 0.95568 0.97043 1.22814 0.97733 0.94701 1.00927 1.22268 0.97512 0.82281 0.99443 0.92424 0.92494 0.94737 0.94235 0.91388 0.93316 0.85203 0.90870 0.90217 0.89878 0.88609 0.84476 0.91608 0.88699 0.87575 0.90553 0.89855 0.91340 0.90581 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.27 9.64 71.98 0.69 -4.57 16 2 C -0.12 -5.67 5.36 30.59 0.16 -5.50 16 3 C 0.23 10.93 2.03 44.17 0.09 11.02 16 4 H -0.03 -1.76 7.41 -2.39 -0.02 -1.78 16 5 C -0.50 -26.27 8.40 25.60 0.22 -26.05 16 6 H 0.06 3.16 7.46 -2.91 -0.02 3.14 16 7 C 0.01 0.39 5.29 84.65 0.45 0.84 16 8 N -0.92 -52.21 11.29 21.45 0.24 -51.96 16 9 Si 0.95 42.58 29.54 68.60 2.03 44.60 16 10 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 13 N -0.67 -26.72 6.23 -466.21 -2.90 -29.62 16 14 C 0.09 3.08 3.34 46.30 0.15 3.23 16 15 H 0.03 1.29 7.40 -2.39 -0.02 1.27 16 16 C -0.11 -3.35 5.95 31.78 0.19 -3.16 16 17 C 0.11 2.46 6.50 86.68 0.56 3.02 16 18 N -0.61 -17.11 3.33 -811.12 -2.70 -19.81 16 19 C 0.53 15.09 7.38 87.66 0.65 15.74 16 20 O -0.59 -21.78 16.16 -3.04 -0.05 -21.83 16 21 C -0.13 -2.49 3.35 -11.01 -0.04 -2.53 16 22 C -0.12 -1.99 7.64 31.18 0.24 -1.75 16 23 C -0.13 -1.62 8.09 31.18 0.25 -1.37 16 24 C -0.12 -2.22 7.40 31.12 0.23 -1.99 16 25 C 0.11 3.43 6.27 86.85 0.54 3.97 16 26 H 0.06 1.89 6.62 -2.39 -0.02 1.87 16 27 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.07 3.60 5.95 -2.39 -0.01 3.59 16 31 H 0.26 14.01 8.31 -92.71 -0.77 13.23 16 32 H 0.33 12.01 6.22 -89.70 -0.56 11.46 16 33 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 35 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.14 1.90 8.13 -2.39 -0.02 1.88 16 38 H 0.07 1.32 8.09 -2.39 -0.02 1.30 16 39 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.07 1.59 7.45 -2.39 -0.02 1.57 16 44 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.06 1.96 8.03 -2.39 -0.02 1.95 16 Total: -1.00 -64.42 353.30 1.40 -63.02 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 0.40 Total: 24.71 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: 4.39 Total: -9.10 kcal Atomic # 7 Polarization: -96.03 SS G_CDS: -5.37 Total: -101.40 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.05 Total: -21.83 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Total: -64.42 1.40 -63.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160005.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.145 kcal (2) G-P(sol) polarization free energy of solvation -64.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds