Wall clock time and date at job start Tue Mar 31 2020 01:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46903 * 2 1 4 4 H 1.09002 * 109.46720 * 57.49744 * 3 2 1 5 5 C 1.50701 * 109.46847 * 177.49430 * 3 2 1 6 6 H 1.08000 * 119.99626 * 114.91957 * 5 3 2 7 7 C 1.37878 * 120.00328 * 294.91757 * 5 3 2 8 8 N 1.31514 * 119.99530 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00110 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47191 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47334 * 119.99967 * 9 7 5 12 12 H 1.48506 * 109.47008 * 240.00107 * 9 7 5 13 13 N 1.46898 * 109.47351 * 297.49397 * 3 2 1 14 14 C 1.46967 * 111.00271 * 280.66652 * 13 3 2 15 15 C 1.53034 * 109.47532 * 175.39404 * 14 13 3 16 16 C 1.53139 * 109.34185 * 59.83573 * 15 14 13 17 17 C 1.53243 * 109.06246 * 301.66206 * 16 15 14 18 18 C 1.45967 * 110.99546 * 156.16705 * 13 3 2 19 19 C 1.53960 * 110.71682 * 60.26648 * 18 13 3 20 20 C 1.51441 * 104.07265 * 217.75386 * 19 18 13 21 21 O 1.21273 * 124.94487 * 195.69743 * 20 19 18 22 22 N 1.34493 * 110.10424 * 15.71767 * 20 19 18 23 23 C 1.46497 * 124.35007 * 180.40003 * 22 20 19 24 24 C 1.46911 * 111.29906 * 0.37992 * 22 20 19 25 25 H 1.09005 * 109.46697 * 178.94832 * 1 2 3 26 26 H 1.09006 * 109.46702 * 298.94351 * 1 2 3 27 27 H 1.08992 * 109.47173 * 58.94666 * 1 2 3 28 28 H 1.08999 * 109.46848 * 240.00692 * 2 1 3 29 29 H 1.08997 * 109.47563 * 120.00615 * 2 1 3 30 30 H 0.97001 * 119.99561 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47027 * 295.39626 * 14 13 3 32 32 H 1.08997 * 109.46900 * 55.39322 * 14 13 3 33 33 H 1.09003 * 109.49306 * 179.80035 * 15 14 13 34 34 H 1.09007 * 109.49424 * 299.87746 * 15 14 13 35 35 H 1.09002 * 109.53871 * 61.54230 * 16 15 14 36 36 H 1.09002 * 109.53529 * 181.70240 * 16 15 14 37 37 H 1.08998 * 109.47954 * 176.40817 * 17 16 15 38 38 H 1.08996 * 109.47960 * 296.43047 * 17 16 15 39 39 H 1.08997 * 110.51124 * 336.40068 * 19 18 13 40 40 H 1.08994 * 110.51195 * 99.10792 * 19 18 13 41 41 H 1.09002 * 109.47394 * 269.97598 * 23 22 20 42 42 H 1.08999 * 109.47069 * 29.97690 * 23 22 20 43 43 H 1.09003 * 109.47648 * 149.97566 * 23 22 20 44 44 H 1.08999 * 110.27329 * 224.59916 * 24 22 20 45 45 H 1.09003 * 110.34390 * 102.57835 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6404 1.9691 0.8667 5 6 3.5457 1.4430 0.0621 6 1 4.1203 1.8249 -0.7688 7 6 4.1898 0.9560 1.1797 8 7 3.4900 0.4915 2.1917 9 14 6.0562 0.9572 1.2569 10 1 6.6032 1.5286 0.0001 11 1 6.5034 1.7786 2.4104 12 1 6.5457 -0.4352 1.4213 13 7 1.6004 2.1174 -1.2285 14 6 2.4538 1.7480 -2.3666 15 6 1.8982 2.3772 -3.6463 16 6 1.8741 3.9007 -3.4933 17 6 1.0139 4.2682 -2.2794 18 6 1.5559 3.5645 -1.0431 19 6 2.9487 4.1098 -0.6779 20 6 2.6637 5.1983 0.3358 21 8 3.4522 6.0549 0.6754 22 7 1.4091 5.0764 0.8047 23 6 0.8059 5.9723 1.7945 24 6 0.7212 3.9296 0.1966 25 1 -0.3633 -1.0276 -0.0189 26 1 -0.3633 0.4974 0.8994 27 1 -0.3633 0.5301 -0.8803 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.9432 0.1485 2.9778 31 1 3.4670 2.1106 -2.1937 32 1 2.4692 0.6633 -2.4721 33 1 2.5330 2.1063 -4.4900 34 1 0.8857 2.0130 -3.8207 35 1 2.8895 4.2684 -3.3454 36 1 1.4507 4.3505 -4.3913 37 1 1.0437 5.3469 -2.1260 38 1 -0.0151 3.9543 -2.4547 39 1 3.5616 3.3255 -0.2339 40 1 3.4385 4.5264 -1.5580 41 1 0.9976 5.5885 2.7966 42 1 1.2409 6.9669 1.6970 43 1 -0.2696 6.0280 1.6264 44 1 -0.2903 4.2088 -0.0982 45 1 0.6932 3.0915 0.8931 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255168301.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:11 Heat of formation + Delta-G solvation = -18.017232 kcal Electronic energy + Delta-G solvation = -24809.698314 eV Core-core repulsion = 21634.394391 eV Total energy + Delta-G solvation = -3175.303922 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.73732 -38.03859 -35.34348 -34.83808 -32.08378 -31.88718 -30.64519 -28.30012 -27.08176 -26.40494 -24.79833 -23.76610 -22.50597 -21.13019 -19.65697 -18.87800 -18.11650 -16.52637 -16.19561 -15.80360 -15.40267 -14.60675 -14.35317 -14.03268 -13.82617 -13.44447 -13.35750 -13.10478 -12.83717 -12.73854 -12.41732 -12.00092 -11.91320 -11.76677 -11.64821 -11.41755 -11.28636 -11.09630 -11.01787 -10.79375 -10.46642 -10.34919 -10.16300 -10.00490 -9.70824 -9.59930 -9.44587 -9.17817 -8.98323 -8.48625 -8.06447 -7.20640 -6.14317 -4.22951 3.21226 3.27922 3.32261 3.34461 3.54099 4.31126 4.65711 4.96223 5.09581 5.18324 5.24779 5.33796 5.51206 5.52819 5.63844 5.70278 5.75272 5.89078 5.95399 6.04573 6.13544 6.19774 6.24985 6.30450 6.35136 6.38778 6.39948 6.44760 6.55701 6.60075 6.71826 6.85010 6.99320 7.05733 7.08163 7.10892 7.31557 7.47722 7.63196 7.67078 7.84757 8.00081 8.18895 8.37137 8.79294 8.84231 9.41623 10.86411 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012698 B = 0.009317 C = 0.007680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.549553 B = 3004.599442 C = 3645.056181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 C 0.201 3.799 4 H 0.052 0.948 5 C -0.553 4.553 6 H 0.072 0.928 7 C 0.074 3.926 8 N -0.875 5.875 9 Si 0.881 3.119 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.517 5.517 14 C 0.064 3.936 15 C -0.119 4.119 16 C -0.119 4.119 17 C -0.098 4.098 18 C 0.119 3.881 19 C -0.220 4.220 20 C 0.526 3.474 21 O -0.556 6.556 22 N -0.625 5.625 23 C 0.099 3.901 24 C 0.107 3.893 25 H 0.025 0.975 26 H 0.036 0.964 27 H 0.052 0.948 28 H 0.034 0.966 29 H 0.081 0.919 30 H 0.263 0.737 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.171 0.829 40 H 0.083 0.917 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.331 4.008 -6.724 10.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.140 4.140 3 C 0.096 3.904 4 H 0.070 0.930 5 C -0.591 4.591 6 H 0.090 0.910 7 C -0.130 4.130 8 N -0.511 5.511 9 Si 0.709 3.291 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.241 5.241 14 C -0.063 4.063 15 C -0.157 4.157 16 C -0.156 4.156 17 C -0.136 4.136 18 C 0.027 3.973 19 C -0.260 4.260 20 C 0.316 3.684 21 O -0.435 6.435 22 N -0.360 5.360 23 C -0.043 4.043 24 C -0.015 4.015 25 H 0.044 0.956 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.187 0.813 40 H 0.101 0.899 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.441 4.252 -6.404 10.699 hybrid contribution 1.801 0.238 0.471 1.877 sum -5.640 4.490 -5.933 9.337 Atomic orbital electron populations 1.21726 0.98808 0.98603 1.00586 1.21470 0.92252 0.98937 1.01316 1.19541 0.92986 0.91201 0.86708 0.93045 1.21782 0.92730 1.41939 1.02675 0.91035 1.24930 0.98012 0.94498 0.95593 1.69906 1.35245 1.40020 1.05963 0.86695 0.86133 0.77812 0.78485 1.19547 1.20870 1.20838 1.62069 1.51816 1.03299 1.06890 1.21960 0.95519 0.99906 0.88959 1.21668 1.01313 0.94832 0.97886 1.21593 0.99976 0.96796 0.97248 1.21429 0.99675 0.98611 0.93923 1.21007 0.92714 0.90547 0.93052 1.24042 1.01956 1.00744 0.99238 1.21197 0.80731 0.84644 0.81875 1.90614 1.50313 1.38936 1.63655 1.48197 1.14726 1.30128 1.42905 1.21422 0.97699 0.93727 0.91488 1.22366 0.95191 0.88673 0.95316 0.95602 0.94466 0.92918 0.94745 0.90106 0.92723 0.93525 0.91012 0.92616 0.91862 0.92238 0.92648 0.92538 0.91292 0.81254 0.89901 0.93017 0.91355 0.91604 0.91341 0.88877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.79 37.16 0.36 -2.18 16 2 C -0.10 -2.15 5.34 -26.73 -0.14 -2.29 16 3 C 0.20 4.33 1.24 -68.86 -0.09 4.24 16 4 H 0.05 1.23 5.05 -51.93 -0.26 0.97 16 5 C -0.55 -13.24 5.19 -34.44 -0.18 -13.42 16 6 H 0.07 1.72 4.51 -52.49 -0.24 1.48 16 7 C 0.07 1.90 5.31 -17.82 -0.09 1.80 16 8 N -0.87 -23.15 11.69 55.43 0.65 -22.50 16 9 Si 0.88 20.46 29.54 -169.99 -5.02 15.44 16 10 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 13 N -0.52 -9.37 3.72 -212.43 -0.79 -10.16 16 14 C 0.06 1.12 4.44 -3.77 -0.02 1.10 16 15 C -0.12 -1.67 6.07 -26.64 -0.16 -1.83 16 16 C -0.12 -1.60 5.80 -26.53 -0.15 -1.76 16 17 C -0.10 -1.41 4.75 -26.99 -0.13 -1.54 16 18 C 0.12 2.02 0.60 -131.56 -0.08 1.94 16 19 C -0.22 -4.32 4.56 -27.02 -0.12 -4.44 16 20 C 0.53 11.01 8.03 -10.75 -0.09 10.92 16 21 O -0.56 -13.35 17.60 5.56 0.10 -13.25 16 22 N -0.62 -11.14 3.34 -180.48 -0.60 -11.74 16 23 C 0.10 1.43 10.96 59.85 0.66 2.09 16 24 C 0.11 1.80 6.30 -3.38 -0.02 1.77 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.91 7.64 -51.93 -0.40 0.51 16 28 H 0.03 0.73 6.98 -51.93 -0.36 0.36 16 29 H 0.08 1.96 6.43 -51.93 -0.33 1.63 16 30 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 31 H 0.05 0.89 5.10 -51.93 -0.26 0.63 16 32 H 0.07 1.30 6.93 -51.93 -0.36 0.94 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.85 6.57 -51.93 -0.34 0.51 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.17 3.88 3.48 -51.93 -0.18 3.69 16 40 H 0.08 1.55 6.24 -51.93 -0.32 1.22 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.99 7.93 -51.93 -0.41 0.58 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 0.97 7.88 -51.93 -0.41 0.56 16 45 H 0.09 1.76 5.26 -51.93 -0.27 1.49 16 LS Contribution 327.20 15.07 4.93 4.93 Total: -1.00 -27.40 327.20 -8.09 -35.49 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -7.10 Total: 5.38 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -0.25 Total: -3.60 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: -0.75 Total: -44.40 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.10 Total: -13.25 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.40 -8.09 -35.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255168301.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.473 kcal (2) G-P(sol) polarization free energy of solvation -27.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds