Wall clock time and date at job start Tue Mar 31 2020 01:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46903 * 2 1 4 4 H 1.09002 * 109.46720 * 57.49744 * 3 2 1 5 5 C 1.50701 * 109.46847 * 177.49430 * 3 2 1 6 6 H 1.08000 * 119.99626 * 114.91957 * 5 3 2 7 7 C 1.37878 * 120.00328 * 294.91757 * 5 3 2 8 8 N 1.31514 * 119.99530 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00110 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47191 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47334 * 119.99967 * 9 7 5 12 12 H 1.48506 * 109.47008 * 240.00107 * 9 7 5 13 13 N 1.46898 * 109.47351 * 297.49397 * 3 2 1 14 14 C 1.46967 * 111.00271 * 280.66652 * 13 3 2 15 15 C 1.53034 * 109.47532 * 175.39404 * 14 13 3 16 16 C 1.53139 * 109.34185 * 59.83573 * 15 14 13 17 17 C 1.53243 * 109.06246 * 301.66206 * 16 15 14 18 18 C 1.45967 * 110.99546 * 156.16705 * 13 3 2 19 19 C 1.53960 * 110.71682 * 60.26648 * 18 13 3 20 20 C 1.51441 * 104.07265 * 217.75386 * 19 18 13 21 21 O 1.21273 * 124.94487 * 195.69743 * 20 19 18 22 22 N 1.34493 * 110.10424 * 15.71767 * 20 19 18 23 23 C 1.46497 * 124.35007 * 180.40003 * 22 20 19 24 24 C 1.46911 * 111.29906 * 0.37992 * 22 20 19 25 25 H 1.09005 * 109.46697 * 178.94832 * 1 2 3 26 26 H 1.09006 * 109.46702 * 298.94351 * 1 2 3 27 27 H 1.08992 * 109.47173 * 58.94666 * 1 2 3 28 28 H 1.08999 * 109.46848 * 240.00692 * 2 1 3 29 29 H 1.08997 * 109.47563 * 120.00615 * 2 1 3 30 30 H 0.97001 * 119.99561 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47027 * 295.39626 * 14 13 3 32 32 H 1.08997 * 109.46900 * 55.39322 * 14 13 3 33 33 H 1.09003 * 109.49306 * 179.80035 * 15 14 13 34 34 H 1.09007 * 109.49424 * 299.87746 * 15 14 13 35 35 H 1.09002 * 109.53871 * 61.54230 * 16 15 14 36 36 H 1.09002 * 109.53529 * 181.70240 * 16 15 14 37 37 H 1.08998 * 109.47954 * 176.40817 * 17 16 15 38 38 H 1.08996 * 109.47960 * 296.43047 * 17 16 15 39 39 H 1.08997 * 110.51124 * 336.40068 * 19 18 13 40 40 H 1.08994 * 110.51195 * 99.10792 * 19 18 13 41 41 H 1.09002 * 109.47394 * 269.97598 * 23 22 20 42 42 H 1.08999 * 109.47069 * 29.97690 * 23 22 20 43 43 H 1.09003 * 109.47648 * 149.97566 * 23 22 20 44 44 H 1.08999 * 110.27329 * 224.59916 * 24 22 20 45 45 H 1.09003 * 110.34390 * 102.57835 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6404 1.9691 0.8667 5 6 3.5457 1.4430 0.0621 6 1 4.1203 1.8249 -0.7688 7 6 4.1898 0.9560 1.1797 8 7 3.4900 0.4915 2.1917 9 14 6.0562 0.9572 1.2569 10 1 6.6032 1.5286 0.0001 11 1 6.5034 1.7786 2.4104 12 1 6.5457 -0.4352 1.4213 13 7 1.6004 2.1174 -1.2285 14 6 2.4538 1.7480 -2.3666 15 6 1.8982 2.3772 -3.6463 16 6 1.8741 3.9007 -3.4933 17 6 1.0139 4.2682 -2.2794 18 6 1.5559 3.5645 -1.0431 19 6 2.9487 4.1098 -0.6779 20 6 2.6637 5.1983 0.3358 21 8 3.4522 6.0549 0.6754 22 7 1.4091 5.0764 0.8047 23 6 0.8059 5.9723 1.7945 24 6 0.7212 3.9296 0.1966 25 1 -0.3633 -1.0276 -0.0189 26 1 -0.3633 0.4974 0.8994 27 1 -0.3633 0.5301 -0.8803 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.9432 0.1485 2.9778 31 1 3.4670 2.1106 -2.1937 32 1 2.4692 0.6633 -2.4721 33 1 2.5330 2.1063 -4.4900 34 1 0.8857 2.0130 -3.8207 35 1 2.8895 4.2684 -3.3454 36 1 1.4507 4.3505 -4.3913 37 1 1.0437 5.3469 -2.1260 38 1 -0.0151 3.9543 -2.4547 39 1 3.5616 3.3255 -0.2339 40 1 3.4385 4.5264 -1.5580 41 1 0.9976 5.5885 2.7966 42 1 1.2409 6.9669 1.6970 43 1 -0.2696 6.0280 1.6264 44 1 -0.2903 4.2088 -0.0982 45 1 0.6932 3.0915 0.8931 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255168301.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:10 Heat of formation + Delta-G solvation = -34.448869 kcal Electronic energy + Delta-G solvation = -24810.410843 eV Core-core repulsion = 21634.394391 eV Total energy + Delta-G solvation = -3176.016452 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.21313 -39.59888 -36.94423 -36.32473 -33.85567 -33.26992 -32.09827 -29.74536 -28.64421 -27.91781 -26.21403 -25.24609 -24.04228 -22.47341 -21.21656 -20.45574 -19.52870 -18.28662 -17.73046 -17.29289 -17.03003 -16.17898 -15.92967 -15.46294 -15.13636 -15.01088 -14.83119 -14.60972 -14.40110 -14.14137 -13.83330 -13.44055 -13.24197 -13.19254 -13.11247 -12.97088 -12.89677 -12.71596 -12.56702 -12.34286 -12.22115 -11.70594 -11.59859 -11.42366 -11.26528 -11.16300 -10.94190 -10.82589 -10.63411 -10.38782 -9.54562 -8.83297 -8.06823 -6.19211 1.30996 1.38323 1.43271 1.62222 2.16028 2.37474 3.14159 3.20583 3.58336 3.88796 3.93557 4.09393 4.23611 4.35565 4.41038 4.49205 4.52644 4.58950 4.71996 4.78126 4.80518 4.82333 4.87079 4.94398 5.00941 5.07846 5.10850 5.18127 5.23024 5.24231 5.37259 5.42724 5.50830 5.53555 5.60696 5.64038 5.65322 5.74610 5.87266 6.10842 6.13434 6.24012 6.42293 6.77487 7.00288 7.20398 7.46260 8.89483 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012698 B = 0.009317 C = 0.007680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.549553 B = 3004.599442 C = 3645.056181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.097 4.097 3 C 0.209 3.791 4 H 0.030 0.970 5 C -0.542 4.542 6 H 0.068 0.932 7 C 0.030 3.970 8 N -0.902 5.902 9 Si 0.921 3.079 10 H -0.269 1.269 11 H -0.295 1.295 12 H -0.279 1.279 13 N -0.505 5.505 14 C 0.063 3.937 15 C -0.109 4.109 16 C -0.117 4.117 17 C -0.092 4.092 18 C 0.120 3.880 19 C -0.217 4.217 20 C 0.513 3.487 21 O -0.597 6.597 22 N -0.619 5.619 23 C 0.092 3.908 24 C 0.107 3.893 25 H 0.039 0.961 26 H 0.033 0.967 27 H 0.066 0.934 28 H 0.030 0.970 29 H 0.046 0.954 30 H 0.259 0.741 31 H 0.023 0.977 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.046 0.954 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.137 0.863 40 H 0.088 0.912 41 H 0.048 0.952 42 H 0.066 0.934 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.574 4.717 -8.776 13.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.136 4.136 3 C 0.102 3.898 4 H 0.048 0.952 5 C -0.581 4.581 6 H 0.086 0.914 7 C -0.171 4.171 8 N -0.541 5.541 9 Si 0.749 3.251 10 H -0.193 1.193 11 H -0.221 1.221 12 H -0.205 1.205 13 N -0.227 5.227 14 C -0.065 4.065 15 C -0.147 4.147 16 C -0.154 4.154 17 C -0.130 4.130 18 C 0.029 3.971 19 C -0.258 4.258 20 C 0.303 3.697 21 O -0.479 6.479 22 N -0.351 5.351 23 C -0.049 4.049 24 C -0.015 4.015 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.085 0.915 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.108 0.892 39 H 0.154 0.846 40 H 0.106 0.894 41 H 0.067 0.933 42 H 0.085 0.915 43 H 0.125 0.875 44 H 0.125 0.875 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.713 4.947 -8.471 13.805 hybrid contribution 2.496 0.043 1.107 2.731 sum -7.217 4.990 -7.364 11.455 Atomic orbital electron populations 1.21580 0.96003 0.99772 1.01039 1.21316 0.94695 0.98138 0.99412 1.19305 0.91257 0.91584 0.87637 0.95203 1.22103 0.94431 1.39719 1.01818 0.91434 1.25442 1.00330 0.95311 0.96005 1.69998 1.35860 1.41841 1.06377 0.86063 0.83658 0.77539 0.77817 1.19310 1.22147 1.20468 1.62068 1.51188 1.03904 1.05575 1.21985 0.94528 0.99559 0.90396 1.21599 1.02041 0.94997 0.96071 1.21602 0.99400 0.96336 0.98107 1.21419 1.00686 0.98497 0.92403 1.21187 0.91209 0.89786 0.94941 1.23892 1.03338 0.99527 0.99023 1.21436 0.81491 0.84448 0.82288 1.90578 1.51630 1.40569 1.65141 1.48329 1.13835 1.30302 1.42678 1.21687 0.99951 0.92808 0.90467 1.22439 0.96853 0.87675 0.94519 0.94155 0.94756 0.91504 0.95123 0.93492 0.93186 0.95863 0.92117 0.91008 0.90594 0.93503 0.89713 0.91977 0.89176 0.84570 0.89367 0.93324 0.91538 0.87491 0.87456 0.91092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.38 9.79 71.98 0.70 -3.68 16 2 C -0.10 -4.13 5.34 30.60 0.16 -3.96 16 3 C 0.21 9.04 1.24 44.17 0.05 9.09 16 4 H 0.03 1.46 5.05 -2.39 -0.01 1.45 16 5 C -0.54 -26.61 5.19 25.60 0.13 -26.47 16 6 H 0.07 3.34 4.51 -2.91 -0.01 3.32 16 7 C 0.03 1.59 5.31 84.65 0.45 2.04 16 8 N -0.90 -49.46 11.69 21.45 0.25 -49.21 16 9 Si 0.92 43.29 29.54 68.60 2.03 45.32 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 11 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 13 N -0.50 -17.58 3.72 -826.01 -3.08 -20.66 16 14 C 0.06 2.11 4.44 86.30 0.38 2.49 16 15 C -0.11 -2.70 6.07 30.65 0.19 -2.51 16 16 C -0.12 -2.73 5.80 30.72 0.18 -2.55 16 17 C -0.09 -2.29 4.75 30.42 0.14 -2.15 16 18 C 0.12 3.88 0.60 4.06 0.00 3.88 16 19 C -0.22 -8.53 4.56 30.41 0.14 -8.39 16 20 C 0.51 21.51 8.03 87.94 0.71 22.21 16 21 O -0.60 -29.13 17.60 -3.01 -0.05 -29.18 16 22 N -0.62 -21.22 3.34 -843.47 -2.82 -24.04 16 23 C 0.09 2.48 10.96 127.77 1.40 3.88 16 24 C 0.11 3.36 6.30 86.58 0.55 3.91 16 25 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 26 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 27 H 0.07 2.12 7.64 -2.39 -0.02 2.10 16 28 H 0.03 1.29 6.98 -2.39 -0.02 1.27 16 29 H 0.05 2.33 6.43 -2.39 -0.02 2.31 16 30 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 31 H 0.02 0.89 5.10 -2.39 -0.01 0.87 16 32 H 0.06 2.14 6.93 -2.39 -0.02 2.13 16 33 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 35 H 0.05 1.22 6.57 -2.39 -0.02 1.21 16 36 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.14 6.41 3.48 -2.39 -0.01 6.40 16 40 H 0.09 3.29 6.24 -2.39 -0.01 3.27 16 41 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.07 1.83 7.93 -2.39 -0.02 1.81 16 43 H 0.11 2.00 8.14 -2.39 -0.02 1.99 16 44 H 0.11 2.57 7.88 -2.39 -0.02 2.55 16 45 H 0.07 2.62 5.26 -2.39 -0.01 2.60 16 Total: -1.00 -61.59 327.20 2.50 -59.09 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: 0.98 Total: 20.91 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 5.19 Total: -2.22 kcal Atomic # 7 Polarization: -88.27 SS G_CDS: -5.64 Total: -93.91 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -0.05 Total: -29.18 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -61.59 2.50 -59.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255168301.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.639 kcal (2) G-P(sol) polarization free energy of solvation -61.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds