Wall clock time and date at job start Tue Mar 31 2020 01:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47091 * 2 1 4 4 H 1.09000 * 109.47114 * 178.96094 * 3 2 1 5 5 C 1.50700 * 109.47377 * 298.96785 * 3 2 1 6 6 H 1.08004 * 119.99945 * 119.99620 * 5 3 2 7 7 C 1.37873 * 120.00006 * 299.99730 * 5 3 2 8 8 N 1.31512 * 119.99940 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 119.99941 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47202 * 89.99871 * 9 7 5 11 11 H 1.48501 * 109.46814 * 209.99976 * 9 7 5 12 12 H 1.48498 * 109.47075 * 329.99833 * 9 7 5 13 13 N 1.46907 * 109.46813 * 58.96936 * 3 2 1 14 14 C 1.48559 * 110.99848 * 176.79965 * 13 3 2 15 15 C 1.54383 * 104.59339 * 200.96126 * 14 13 3 16 16 H 1.09004 * 117.59953 * 244.72129 * 15 14 13 17 17 C 1.54260 * 105.06250 * 23.84869 * 15 14 13 18 18 H 1.08999 * 121.78957 * 222.13312 * 17 15 14 19 19 C 1.48559 * 110.99990 * 61.38122 * 13 3 2 20 20 C 1.52990 * 118.13325 * 89.19645 * 15 14 13 21 21 H 1.09003 * 117.43958 * 15.97363 * 20 15 14 22 22 N 1.46490 * 117.44829 * 160.72791 * 20 15 14 23 23 C 1.34777 * 120.00372 * 204.99759 * 22 20 15 24 24 O 1.21284 * 120.00102 * 0.02562 * 23 22 20 25 25 C 1.50704 * 120.00209 * 179.97438 * 23 22 20 26 26 C 1.53005 * 109.46991 * 180.02562 * 25 23 22 27 27 C 1.53000 * 109.47185 * 300.00695 * 25 23 22 28 28 H 1.09001 * 109.46830 * 175.35656 * 1 2 3 29 29 H 1.09005 * 109.46931 * 295.35130 * 1 2 3 30 30 H 1.08993 * 109.47005 * 55.35410 * 1 2 3 31 31 H 1.08999 * 109.47158 * 120.00402 * 2 1 3 32 32 H 1.09004 * 109.46918 * 240.00308 * 2 1 3 33 33 H 0.96999 * 119.99977 * 180.02562 * 8 7 5 34 34 H 1.09003 * 110.41165 * 319.73406 * 14 13 3 35 35 H 1.08997 * 110.41098 * 82.06228 * 14 13 3 36 36 H 1.09007 * 110.40580 * 277.81560 * 19 13 3 37 37 H 1.08996 * 110.41205 * 40.25809 * 19 13 3 38 38 H 0.97004 * 120.00440 * 25.00164 * 22 20 15 39 39 H 1.08997 * 109.46958 * 60.00506 * 25 23 22 40 40 H 1.08997 * 109.47126 * 60.00279 * 26 25 23 41 41 H 1.09002 * 109.46621 * 180.02562 * 26 25 23 42 42 H 1.08998 * 109.46748 * 300.00050 * 26 25 23 43 43 H 1.08990 * 109.47045 * 59.99815 * 27 25 23 44 44 H 1.09004 * 109.46913 * 180.02562 * 27 25 23 45 45 H 1.09004 * 109.46640 * 299.99751 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0186 5 6 1.5587 2.1455 -1.2430 6 1 0.9362 3.0242 -1.1597 7 6 1.9131 1.6671 -2.4866 8 7 1.4934 2.2809 -3.5713 9 14 2.9891 0.1469 -2.6306 10 1 2.1310 -1.0638 -2.6837 11 1 3.8025 0.2319 -3.8702 12 1 3.8894 0.0643 -1.4526 13 7 1.5301 2.1421 1.1869 14 6 2.0673 3.5251 1.2614 15 6 1.9125 3.9232 2.7450 16 1 1.2309 4.7407 2.9800 17 6 1.8763 2.5879 3.5166 18 1 1.1774 2.4166 4.3353 19 6 2.0125 1.4954 2.4343 20 6 3.0616 3.6007 3.7021 21 1 4.0281 3.3550 3.2619 22 7 3.1134 4.3372 4.9673 23 6 4.2891 4.4969 5.6066 24 8 5.3044 4.0312 5.1341 25 6 4.3425 5.2551 6.9079 26 6 5.7843 5.2905 7.4188 27 6 3.8452 6.6849 6.6859 28 1 -0.3633 -1.0243 -0.0832 29 1 -0.3633 0.4400 0.9287 30 1 -0.3633 0.5842 -0.8454 31 1 1.8934 -0.5139 0.8899 32 1 1.8934 -0.5138 -0.8901 33 1 1.7424 1.9440 -4.4462 34 1 3.1179 3.5410 0.9713 35 1 1.4876 4.1930 0.6242 36 1 1.3900 0.6355 2.6818 37 1 3.0544 1.1936 2.3277 38 1 2.3015 4.7100 5.3452 39 1 3.7082 4.7598 7.6431 40 1 6.4182 5.7859 6.6835 41 1 5.8227 5.8385 8.3603 42 1 6.1388 4.2719 7.5769 43 1 2.8182 6.6599 6.3218 44 1 3.8842 7.2333 7.6271 45 1 4.4795 7.1800 5.9507 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255169082.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:54 Heat of formation + Delta-G solvation = -2.534518 kcal Electronic energy + Delta-G solvation = -22479.792082 eV Core-core repulsion = 19305.159540 eV Total energy + Delta-G solvation = -3174.632542 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.27118 -39.12347 -35.95942 -34.73561 -33.70601 -31.90220 -30.65100 -28.12228 -27.43200 -26.76774 -24.60169 -23.24866 -22.33141 -20.89899 -20.04781 -19.70177 -19.08822 -17.31652 -16.85498 -16.29869 -15.57272 -15.39815 -14.74746 -14.18161 -14.09637 -13.98969 -13.22776 -13.14995 -13.06307 -12.91518 -12.62613 -12.52005 -12.31675 -12.14261 -12.08233 -11.57265 -11.49163 -11.38220 -11.11006 -11.01496 -10.76399 -10.62253 -10.50649 -10.10591 -10.07039 -9.87215 -9.72542 -9.29661 -8.97779 -8.66091 -8.54243 -7.52708 -6.07504 -4.05203 2.43475 2.87866 3.26886 3.37232 3.38394 3.80962 4.33947 4.39701 4.54354 4.57186 4.63991 4.89460 4.99683 5.04189 5.16722 5.27024 5.27329 5.37518 5.42126 5.51732 5.54087 5.60504 5.80496 5.88068 5.96807 5.98709 6.06719 6.12459 6.15683 6.32544 6.35069 6.37573 6.53248 6.61712 6.68193 6.85132 7.01008 7.07217 7.34496 7.43667 7.52207 7.85900 7.92215 8.08641 8.62010 8.99160 9.54895 11.05246 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.029351 B = 0.003593 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.727400 B = 7791.838208 C = 7902.932518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.120 4.120 3 C 0.175 3.825 4 H 0.000 1.000 5 C -0.498 4.498 6 H 0.081 0.919 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.881 3.119 10 H -0.277 1.277 11 H -0.297 1.297 12 H -0.269 1.269 13 N -0.487 5.487 14 C 0.079 3.921 15 C -0.160 4.160 16 H 0.111 0.889 17 C -0.170 4.170 18 H 0.113 0.887 19 C 0.059 3.941 20 C 0.096 3.904 21 H 0.134 0.866 22 N -0.698 5.698 23 C 0.518 3.482 24 O -0.536 6.536 25 C -0.114 4.114 26 C -0.133 4.133 27 C -0.145 4.145 28 H 0.022 0.978 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.033 0.967 32 H 0.046 0.954 33 H 0.264 0.736 34 H 0.042 0.958 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.038 0.962 38 H 0.400 0.600 39 H 0.097 0.903 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.068 0.932 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.982 5.280 21.041 21.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.158 4.158 3 C 0.067 3.933 4 H 0.017 0.983 5 C -0.537 4.537 6 H 0.099 0.901 7 C -0.129 4.129 8 N -0.536 5.536 9 Si 0.711 3.289 10 H -0.204 1.204 11 H -0.225 1.225 12 H -0.195 1.195 13 N -0.212 5.212 14 C -0.049 4.049 15 C -0.180 4.180 16 H 0.129 0.871 17 C -0.190 4.190 18 H 0.131 0.869 19 C -0.069 4.069 20 C -0.011 4.011 21 H 0.151 0.849 22 N -0.347 5.347 23 C 0.304 3.696 24 O -0.412 6.412 25 C -0.135 4.135 26 C -0.191 4.191 27 C -0.203 4.203 28 H 0.041 0.959 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.056 0.944 38 H 0.235 0.765 39 H 0.115 0.885 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.150 4.933 20.431 21.128 hybrid contribution 0.887 -0.758 -0.044 1.167 sum 3.037 4.175 20.387 21.031 Atomic orbital electron populations 1.21489 0.95243 0.98551 1.03034 1.21845 0.97647 0.97867 0.98421 1.19944 0.92773 0.91002 0.89543 0.98282 1.20836 1.31942 1.13249 0.87626 0.90052 1.24878 0.95570 0.96696 0.95793 1.69871 1.45582 1.40447 0.97747 0.86956 0.80967 0.84025 0.76932 1.20397 1.22462 1.19469 1.65520 1.53957 1.00765 1.00925 1.22422 0.98870 0.92369 0.91275 1.24018 1.00596 0.99059 0.94328 0.87058 1.24592 1.01419 0.92320 1.00683 0.86898 1.22603 0.98515 0.95919 0.89885 1.22527 0.95596 0.97224 0.85719 0.84855 1.45334 1.10259 1.55922 1.23149 1.20727 0.82989 0.79699 0.86135 1.90715 1.33945 1.49148 1.67396 1.21313 1.00394 0.96999 0.94821 1.21618 0.93875 1.02862 1.00725 1.21804 1.01348 0.94297 1.02820 0.95882 0.92924 0.90968 0.94848 0.93577 0.92638 0.93987 0.89153 0.90136 0.94432 0.76527 0.88506 0.91824 0.92037 0.91912 0.92100 0.91335 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 9.52 37.16 0.35 -2.25 16 2 C -0.12 -2.63 4.92 -26.73 -0.13 -2.76 16 3 C 0.18 4.09 1.11 -68.86 -0.08 4.01 16 4 H 0.00 -0.01 7.04 -51.93 -0.37 -0.37 16 5 C -0.50 -13.55 7.43 -34.44 -0.26 -13.80 16 6 H 0.08 2.41 7.40 -52.48 -0.39 2.02 16 7 C 0.07 2.05 5.45 -17.82 -0.10 1.96 16 8 N -0.90 -27.03 13.96 55.43 0.77 -26.26 16 9 Si 0.88 21.98 24.38 -169.99 -4.14 17.84 16 10 H -0.28 -6.75 6.86 56.52 0.39 -6.37 16 11 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 12 H -0.27 -6.55 6.53 56.52 0.37 -6.18 16 13 N -0.49 -9.76 4.47 -223.40 -1.00 -10.75 16 14 C 0.08 1.46 5.58 -2.18 -0.01 1.45 16 15 C -0.16 -2.28 6.91 -89.24 -0.62 -2.90 16 16 H 0.11 1.39 8.14 -51.93 -0.42 0.96 16 17 C -0.17 -2.36 7.22 -87.06 -0.63 -2.99 16 18 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 19 C 0.06 1.00 5.23 -2.18 -0.01 0.99 16 20 C 0.10 1.31 6.19 -65.77 -0.41 0.91 16 21 H 0.13 2.18 7.40 -51.93 -0.38 1.80 16 22 N -0.70 -7.51 5.46 -51.71 -0.28 -7.79 16 23 C 0.52 6.17 7.15 -10.98 -0.08 6.09 16 24 O -0.54 -8.80 15.55 5.55 0.09 -8.71 16 25 C -0.11 -0.90 3.26 -91.77 -0.30 -1.19 16 26 C -0.13 -1.09 8.48 37.16 0.32 -0.78 16 27 C -0.15 -0.89 9.09 37.16 0.34 -0.56 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 1.02 7.73 -51.93 -0.40 0.62 16 30 H 0.07 1.68 7.09 -51.93 -0.37 1.32 16 31 H 0.03 0.65 7.03 -51.93 -0.36 0.28 16 32 H 0.05 1.07 3.25 -51.93 -0.17 0.91 16 33 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.04 0.83 7.92 -51.93 -0.41 0.42 16 35 H 0.09 1.78 7.57 -51.93 -0.39 1.39 16 36 H 0.08 1.30 7.70 -51.93 -0.40 0.90 16 37 H 0.04 0.67 7.95 -51.93 -0.41 0.25 16 38 H 0.40 3.09 8.24 -40.82 -0.34 2.75 16 39 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 43 H 0.06 0.32 7.56 -51.93 -0.39 -0.07 16 44 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 347.24 15.07 5.23 5.23 Total: -1.00 -31.52 347.24 -8.71 -40.23 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -7.77 Total: 2.04 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -1.61 Total: -11.84 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: -0.51 Total: -44.80 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.09 Total: -8.71 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.14 Total: 17.84 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.52 -8.71 -40.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255169082.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.700 kcal (2) G-P(sol) polarization free energy of solvation -31.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds