Wall clock time and date at job start Tue Mar 31 2020 01:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47091 * 2 1 4 4 H 1.09000 * 109.47114 * 178.96094 * 3 2 1 5 5 C 1.50700 * 109.47377 * 298.96785 * 3 2 1 6 6 H 1.08004 * 119.99945 * 119.99620 * 5 3 2 7 7 C 1.37873 * 120.00006 * 299.99730 * 5 3 2 8 8 N 1.31512 * 119.99940 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 119.99941 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47202 * 89.99871 * 9 7 5 11 11 H 1.48501 * 109.46814 * 209.99976 * 9 7 5 12 12 H 1.48498 * 109.47075 * 329.99833 * 9 7 5 13 13 N 1.46907 * 109.46813 * 58.96936 * 3 2 1 14 14 C 1.48559 * 110.99848 * 176.79965 * 13 3 2 15 15 C 1.54383 * 104.59339 * 200.96126 * 14 13 3 16 16 H 1.09004 * 117.59953 * 244.72129 * 15 14 13 17 17 C 1.54260 * 105.06250 * 23.84869 * 15 14 13 18 18 H 1.08999 * 121.78957 * 222.13312 * 17 15 14 19 19 C 1.48559 * 110.99990 * 61.38122 * 13 3 2 20 20 C 1.52990 * 118.13325 * 89.19645 * 15 14 13 21 21 H 1.09003 * 117.43958 * 15.97363 * 20 15 14 22 22 N 1.46490 * 117.44829 * 160.72791 * 20 15 14 23 23 C 1.34777 * 120.00372 * 204.99759 * 22 20 15 24 24 O 1.21284 * 120.00102 * 0.02562 * 23 22 20 25 25 C 1.50704 * 120.00209 * 179.97438 * 23 22 20 26 26 C 1.53005 * 109.46991 * 180.02562 * 25 23 22 27 27 C 1.53000 * 109.47185 * 300.00695 * 25 23 22 28 28 H 1.09001 * 109.46830 * 175.35656 * 1 2 3 29 29 H 1.09005 * 109.46931 * 295.35130 * 1 2 3 30 30 H 1.08993 * 109.47005 * 55.35410 * 1 2 3 31 31 H 1.08999 * 109.47158 * 120.00402 * 2 1 3 32 32 H 1.09004 * 109.46918 * 240.00308 * 2 1 3 33 33 H 0.96999 * 119.99977 * 180.02562 * 8 7 5 34 34 H 1.09003 * 110.41165 * 319.73406 * 14 13 3 35 35 H 1.08997 * 110.41098 * 82.06228 * 14 13 3 36 36 H 1.09007 * 110.40580 * 277.81560 * 19 13 3 37 37 H 1.08996 * 110.41205 * 40.25809 * 19 13 3 38 38 H 0.97004 * 120.00440 * 25.00164 * 22 20 15 39 39 H 1.08997 * 109.46958 * 60.00506 * 25 23 22 40 40 H 1.08997 * 109.47126 * 60.00279 * 26 25 23 41 41 H 1.09002 * 109.46621 * 180.02562 * 26 25 23 42 42 H 1.08998 * 109.46748 * 300.00050 * 26 25 23 43 43 H 1.08990 * 109.47045 * 59.99815 * 27 25 23 44 44 H 1.09004 * 109.46913 * 180.02562 * 27 25 23 45 45 H 1.09004 * 109.46640 * 299.99751 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0186 5 6 1.5587 2.1455 -1.2430 6 1 0.9362 3.0242 -1.1597 7 6 1.9131 1.6671 -2.4866 8 7 1.4934 2.2809 -3.5713 9 14 2.9891 0.1469 -2.6306 10 1 2.1310 -1.0638 -2.6837 11 1 3.8025 0.2319 -3.8702 12 1 3.8894 0.0643 -1.4526 13 7 1.5301 2.1421 1.1869 14 6 2.0673 3.5251 1.2614 15 6 1.9125 3.9232 2.7450 16 1 1.2309 4.7407 2.9800 17 6 1.8763 2.5879 3.5166 18 1 1.1774 2.4166 4.3353 19 6 2.0125 1.4954 2.4343 20 6 3.0616 3.6007 3.7021 21 1 4.0281 3.3550 3.2619 22 7 3.1134 4.3372 4.9673 23 6 4.2891 4.4969 5.6066 24 8 5.3044 4.0312 5.1341 25 6 4.3425 5.2551 6.9079 26 6 5.7843 5.2905 7.4188 27 6 3.8452 6.6849 6.6859 28 1 -0.3633 -1.0243 -0.0832 29 1 -0.3633 0.4400 0.9287 30 1 -0.3633 0.5842 -0.8454 31 1 1.8934 -0.5139 0.8899 32 1 1.8934 -0.5138 -0.8901 33 1 1.7424 1.9440 -4.4462 34 1 3.1179 3.5410 0.9713 35 1 1.4876 4.1930 0.6242 36 1 1.3900 0.6355 2.6818 37 1 3.0544 1.1936 2.3277 38 1 2.3015 4.7100 5.3452 39 1 3.7082 4.7598 7.6431 40 1 6.4182 5.7859 6.6835 41 1 5.8227 5.8385 8.3603 42 1 6.1388 4.2719 7.5769 43 1 2.8182 6.6599 6.3218 44 1 3.8842 7.2333 7.6271 45 1 4.4795 7.1800 5.9507 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255169082.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:54 Heat of formation + Delta-G solvation = -25.039589 kcal Electronic energy + Delta-G solvation = -22480.767975 eV Core-core repulsion = 19305.159540 eV Total energy + Delta-G solvation = -3175.608435 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.37288 -40.36594 -37.50358 -35.51901 -35.02142 -33.86929 -32.09368 -29.64639 -28.55979 -27.95344 -25.89842 -24.81750 -23.65518 -22.07645 -21.34054 -20.77643 -20.70146 -18.54498 -18.14827 -17.81458 -17.19001 -16.41366 -16.12027 -15.78280 -15.35569 -14.95662 -14.81964 -14.64752 -14.55071 -14.24824 -13.86939 -13.60393 -13.54402 -13.16467 -13.09366 -12.92919 -12.84611 -12.53279 -12.42675 -12.30358 -12.09869 -12.05718 -11.98278 -11.85064 -11.77438 -11.31041 -11.00310 -10.93306 -10.79352 -10.67665 -9.72874 -9.18611 -8.28990 -6.29561 1.26135 1.31443 1.39643 1.50478 1.93024 2.29301 2.66314 3.04579 3.19678 3.60936 3.67793 3.75005 3.85064 3.98832 4.06919 4.16110 4.28644 4.32903 4.38797 4.45699 4.60206 4.61518 4.67419 4.77236 4.80873 4.90413 4.90781 4.94503 4.98855 5.08297 5.10090 5.12272 5.19385 5.27914 5.30897 5.32784 5.33841 5.47559 5.62982 5.75235 5.97353 6.14548 6.50414 6.59757 6.74865 7.21712 7.33982 8.87416 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.029351 B = 0.003593 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.727400 B = 7791.838208 C = 7902.932518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.121 4.121 3 C 0.179 3.821 4 H -0.019 1.019 5 C -0.490 4.490 6 H 0.043 0.957 7 C 0.019 3.981 8 N -0.945 5.945 9 Si 0.937 3.063 10 H -0.262 1.262 11 H -0.299 1.299 12 H -0.260 1.260 13 N -0.494 5.494 14 C 0.074 3.926 15 C -0.152 4.152 16 H 0.139 0.861 17 C -0.152 4.152 18 H 0.148 0.852 19 C 0.054 3.946 20 C 0.101 3.899 21 H 0.102 0.898 22 N -0.681 5.681 23 C 0.512 3.488 24 O -0.589 6.589 25 C -0.105 4.105 26 C -0.134 4.134 27 C -0.143 4.143 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.035 0.965 31 H 0.063 0.937 32 H 0.033 0.967 33 H 0.265 0.735 34 H 0.019 0.981 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.026 0.974 38 H 0.420 0.580 39 H 0.128 0.872 40 H 0.042 0.958 41 H 0.089 0.911 42 H 0.047 0.953 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.109 4.618 24.610 25.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.159 4.159 3 C 0.071 3.929 4 H -0.002 1.002 5 C -0.529 4.529 6 H 0.061 0.939 7 C -0.179 4.179 8 N -0.586 5.586 9 Si 0.765 3.235 10 H -0.188 1.188 11 H -0.227 1.227 12 H -0.184 1.184 13 N -0.218 5.218 14 C -0.054 4.054 15 C -0.172 4.172 16 H 0.157 0.843 17 C -0.172 4.172 18 H 0.166 0.834 19 C -0.074 4.074 20 C -0.006 4.006 21 H 0.120 0.880 22 N -0.332 5.332 23 C 0.300 3.700 24 O -0.469 6.469 25 C -0.126 4.126 26 C -0.192 4.192 27 C -0.200 4.200 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.037 0.963 35 H 0.087 0.913 36 H 0.116 0.884 37 H 0.045 0.955 38 H 0.258 0.742 39 H 0.145 0.855 40 H 0.062 0.938 41 H 0.108 0.892 42 H 0.066 0.934 43 H 0.093 0.907 44 H 0.109 0.891 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.240 4.285 24.045 24.455 hybrid contribution 1.156 -0.461 -1.128 1.679 sum 2.395 3.824 22.917 23.357 Atomic orbital electron populations 1.21383 0.94254 0.99702 1.02093 1.21820 0.98497 0.96367 0.99207 1.19745 0.91512 0.92248 0.89413 1.00178 1.21002 1.30344 1.11979 0.89530 0.93902 1.25613 0.97067 0.99697 0.95502 1.70009 1.47716 1.42496 0.98344 0.86033 0.79555 0.81014 0.76932 1.18794 1.22710 1.18442 1.65450 1.53963 1.01282 1.01127 1.22349 0.96910 0.91775 0.94410 1.23843 1.01701 1.00471 0.91205 0.84295 1.24614 1.01648 0.90507 1.00448 0.83446 1.22697 0.98099 0.97342 0.89252 1.22150 0.94053 0.97621 0.86789 0.88025 1.45179 1.11077 1.55154 1.21745 1.21603 0.82227 0.78998 0.87123 1.90701 1.35814 1.51406 1.68958 1.21377 1.00728 0.97692 0.92778 1.21644 0.93922 1.02114 1.01530 1.21827 1.01624 0.92917 1.03655 0.93168 0.91633 0.94566 0.91815 0.94846 0.92632 0.96303 0.91312 0.88401 0.95549 0.74173 0.85462 0.93840 0.89199 0.93421 0.90684 0.89093 0.93543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.63 9.52 71.98 0.69 -3.95 16 2 C -0.12 -5.11 4.92 30.60 0.15 -4.96 16 3 C 0.18 8.44 1.11 44.17 0.05 8.49 16 4 H -0.02 -0.97 7.04 -2.39 -0.02 -0.98 16 5 C -0.49 -27.70 7.43 25.60 0.19 -27.51 16 6 H 0.04 2.69 7.40 -2.91 -0.02 2.67 16 7 C 0.02 1.09 5.45 84.65 0.46 1.55 16 8 N -0.94 -59.11 13.96 21.45 0.30 -58.81 16 9 Si 0.94 45.91 24.38 68.60 1.67 47.58 16 10 H -0.26 -12.14 6.86 99.48 0.68 -11.46 16 11 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 12 H -0.26 -12.20 6.53 99.48 0.65 -11.55 16 13 N -0.49 -19.68 4.47 -860.70 -3.85 -23.52 16 14 C 0.07 2.81 5.58 86.45 0.48 3.30 16 15 C -0.15 -4.11 6.91 -9.90 -0.07 -4.17 16 16 H 0.14 3.03 8.14 -2.39 -0.02 3.01 16 17 C -0.15 -3.78 7.22 -8.49 -0.06 -3.84 16 18 H 0.15 2.76 8.14 -2.39 -0.02 2.74 16 19 C 0.05 1.72 5.23 86.45 0.45 2.17 16 20 C 0.10 2.64 6.19 46.40 0.29 2.93 16 21 H 0.10 3.40 7.40 -2.39 -0.02 3.38 16 22 N -0.68 -12.90 5.46 -435.91 -2.38 -15.28 16 23 C 0.51 11.40 7.15 87.66 0.63 12.03 16 24 O -0.59 -19.52 15.55 -3.04 -0.05 -19.57 16 25 C -0.10 -1.35 3.26 -11.54 -0.04 -1.39 16 26 C -0.13 -2.00 8.48 71.98 0.61 -1.38 16 27 C -0.14 -1.29 9.09 71.98 0.65 -0.64 16 28 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.06 2.39 7.73 -2.38 -0.02 2.37 16 30 H 0.04 1.67 7.09 -2.39 -0.02 1.66 16 31 H 0.06 2.30 7.03 -2.39 -0.02 2.28 16 32 H 0.03 1.50 3.25 -2.38 -0.01 1.49 16 33 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 34 H 0.02 0.79 7.92 -2.39 -0.02 0.77 16 35 H 0.07 2.86 7.57 -2.39 -0.02 2.85 16 36 H 0.10 2.80 7.70 -2.38 -0.02 2.78 16 37 H 0.03 0.91 7.95 -2.39 -0.02 0.89 16 38 H 0.42 4.71 8.24 -92.71 -0.76 3.95 16 39 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.04 0.81 8.10 -2.39 -0.02 0.79 16 41 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.05 0.84 8.10 -2.39 -0.02 0.82 16 43 H 0.07 0.48 7.56 -2.39 -0.02 0.46 16 44 H 0.09 0.46 8.14 -2.38 -0.02 0.45 16 45 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 Total: -1.00 -73.09 347.24 0.30 -72.79 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.12 Total: 14.18 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: 4.48 Total: -17.37 kcal Atomic # 7 Polarization: -91.69 SS G_CDS: -5.93 Total: -97.62 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.05 Total: -19.57 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.67 Total: 47.58 kcal Total: -73.09 0.30 -72.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255169082.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.751 kcal (2) G-P(sol) polarization free energy of solvation -73.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds