Wall clock time and date at job start Tue Mar 31 2020 01:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47000 * 2 1 4 4 H 1.09004 * 109.46599 * 182.69804 * 3 2 1 5 5 C 1.50696 * 109.47221 * 62.69708 * 3 2 1 6 6 H 1.08000 * 119.99929 * 240.20972 * 5 3 2 7 7 C 1.37879 * 120.00113 * 60.21592 * 5 3 2 8 8 N 1.31519 * 119.99734 * 198.03105 * 7 5 3 9 9 Si 1.86797 * 119.99998 * 17.74921 * 7 5 3 10 10 H 1.48503 * 109.47094 * 95.28389 * 9 7 5 11 11 H 1.48504 * 109.47215 * 215.28187 * 9 7 5 12 12 H 1.48502 * 109.47292 * 335.28294 * 9 7 5 13 13 N 1.46894 * 109.47008 * 302.69308 * 3 2 1 14 14 C 1.46845 * 111.00492 * 299.71346 * 13 3 2 15 15 C 1.53038 * 109.52586 * 174.15924 * 14 13 3 16 16 C 1.53117 * 109.27702 * 59.18320 * 15 14 13 17 17 N 1.46497 * 109.57534 * 182.40919 * 16 15 14 18 18 C 1.34780 * 119.99956 * 274.70973 * 17 16 15 19 19 O 1.21275 * 119.99680 * 0.02562 * 18 17 16 20 20 C 1.50696 * 119.99699 * 179.97438 * 18 17 16 21 21 C 1.53005 * 117.49741 * 248.74634 * 20 18 17 22 22 C 1.53004 * 117.49498 * 180.09018 * 20 18 17 23 23 C 1.53126 * 109.15883 * 302.34043 * 16 15 14 24 24 C 1.46848 * 110.99932 * 175.50182 * 13 3 2 25 25 H 1.09002 * 109.46882 * 183.92585 * 1 2 3 26 26 H 1.08995 * 109.47211 * 303.92944 * 1 2 3 27 27 H 1.09009 * 109.46849 * 63.93412 * 1 2 3 28 28 H 1.08996 * 109.46958 * 239.99330 * 2 1 3 29 29 H 1.09004 * 109.46573 * 119.99957 * 2 1 3 30 30 H 0.96994 * 119.99777 * 179.72847 * 8 7 5 31 31 H 1.09004 * 109.45658 * 294.17762 * 14 13 3 32 32 H 1.09001 * 109.46366 * 54.13941 * 14 13 3 33 33 H 1.08998 * 109.50517 * 299.23846 * 15 14 13 34 34 H 1.08999 * 109.50237 * 179.11375 * 15 14 13 35 35 H 1.09002 * 109.53167 * 62.24602 * 16 15 14 36 36 H 0.97003 * 120.00033 * 94.71109 * 17 16 15 37 37 H 1.08995 * 115.55619 * 34.42250 * 20 18 17 38 38 H 1.08995 * 117.49988 * 0.02562 * 21 20 18 39 39 H 1.09002 * 117.49199 * 145.02682 * 21 20 18 40 40 H 1.09008 * 117.49804 * 214.98367 * 22 20 18 41 41 H 1.08999 * 117.49763 * 359.97438 * 22 20 18 42 42 H 1.08997 * 109.50282 * 297.71815 * 23 16 15 43 43 H 1.08998 * 109.53773 * 177.61762 * 23 16 15 44 44 H 1.09003 * 109.46558 * 305.85552 * 24 13 3 45 45 H 1.09004 * 109.46457 * 65.82440 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1290 1.4428 -0.0484 5 6 1.5930 2.1333 1.2625 6 1 0.9658 3.0106 1.2049 7 6 1.9848 1.6454 2.4911 8 7 1.3360 2.0028 3.5779 9 14 3.4322 0.4707 2.6112 10 1 4.6659 1.2356 2.9245 11 1 3.1774 -0.5203 3.6875 12 1 3.6039 -0.2372 1.3171 13 7 1.4979 2.1534 -1.1655 14 6 1.9195 1.5110 -2.4169 15 6 1.2215 2.1869 -3.5993 16 6 1.5865 3.6738 -3.6190 17 7 0.8765 4.3390 -4.7142 18 6 1.3982 4.3339 -5.9570 19 8 2.4552 3.7783 -6.1685 20 6 0.6675 5.0177 -7.0836 21 6 0.0674 4.1316 -8.1771 22 6 1.3104 4.9750 -8.4714 23 6 1.1807 4.3086 -2.2860 24 6 1.8799 3.5711 -1.1416 25 1 -0.3633 -1.0253 0.0704 26 1 -0.3633 0.5736 0.8526 27 1 -0.3633 0.4516 -0.9232 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6092 1.6565 4.4417 31 1 2.9994 1.6078 -2.5288 32 1 1.6504 0.4550 -2.3916 33 1 0.1420 2.0785 -3.4950 34 1 1.5467 1.7201 -4.5290 35 1 2.6615 3.7833 -3.7623 36 1 0.0309 4.7831 -4.5450 37 1 0.1202 5.9197 -6.8101 38 1 0.2008 3.0541 -8.0813 39 1 -0.8745 4.4510 -8.6231 40 1 1.1858 5.8489 -9.1109 41 1 2.2621 4.4527 -8.5692 42 1 0.1005 4.2336 -2.1611 43 1 1.4761 5.3578 -2.2770 44 1 1.5819 4.0116 -0.1901 45 1 2.9600 3.6584 -1.2596 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172275.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:26 Heat of formation + Delta-G solvation = -10.433997 kcal Electronic energy + Delta-G solvation = -22803.124170 eV Core-core repulsion = 19628.149081 eV Total energy + Delta-G solvation = -3174.975089 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.18189 -38.58686 -36.49106 -35.41606 -33.38570 -31.80991 -30.56579 -29.94100 -26.85057 -25.03100 -23.50875 -22.72046 -22.56427 -21.97721 -20.29120 -19.74149 -18.99989 -17.51293 -16.54698 -16.28801 -15.42168 -15.33202 -14.68864 -14.42139 -14.26895 -13.94178 -13.63989 -13.48582 -12.93256 -12.74972 -12.72298 -12.49927 -12.10815 -11.83778 -11.75204 -11.33483 -11.05655 -10.90289 -10.81769 -10.79492 -10.73044 -10.50055 -10.43936 -10.15731 -10.08011 -9.98553 -9.68559 -9.26854 -9.08049 -8.84410 -8.39950 -7.30444 -6.11442 -4.02578 2.42511 3.08207 3.26945 3.37036 3.40567 3.63556 4.41716 4.47427 4.56535 4.62161 4.72616 4.88677 5.05233 5.12965 5.22940 5.31103 5.44528 5.48462 5.61327 5.67288 5.80402 5.82652 5.86268 5.97969 6.09477 6.12736 6.20634 6.27654 6.34695 6.39909 6.45010 6.55975 6.65701 6.72187 6.82994 7.00190 7.12209 7.21109 7.50493 7.53650 7.70088 7.97752 8.10635 8.21073 8.64862 8.98838 9.55771 11.00843 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.036426 B = 0.003662 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.495163 B = 7643.843843 C = 7770.075468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.115 4.115 3 C 0.191 3.809 4 H -0.009 1.009 5 C -0.509 4.509 6 H 0.081 0.919 7 C 0.079 3.921 8 N -0.888 5.888 9 Si 0.857 3.143 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.255 1.255 13 N -0.519 5.519 14 C 0.052 3.948 15 C -0.119 4.119 16 C 0.144 3.856 17 N -0.719 5.719 18 C 0.540 3.460 19 O -0.544 6.544 20 C -0.195 4.195 21 C -0.153 4.153 22 C -0.150 4.150 23 C -0.121 4.121 24 C 0.066 3.934 25 H 0.019 0.981 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.028 0.972 29 H 0.052 0.948 30 H 0.263 0.737 31 H 0.022 0.978 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.400 0.600 37 H 0.122 0.878 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.099 0.901 45 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.289 4.913 -18.998 19.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.153 4.153 3 C 0.084 3.916 4 H 0.008 0.992 5 C -0.546 4.546 6 H 0.099 0.901 7 C -0.124 4.124 8 N -0.525 5.525 9 Si 0.684 3.316 10 H -0.210 1.210 11 H -0.213 1.213 12 H -0.179 1.179 13 N -0.244 5.244 14 C -0.077 4.077 15 C -0.158 4.158 16 C 0.040 3.960 17 N -0.369 5.369 18 C 0.326 3.674 19 O -0.421 6.421 20 C -0.216 4.216 21 C -0.191 4.191 22 C -0.187 4.187 23 C -0.160 4.160 24 C -0.063 4.063 25 H 0.038 0.962 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.040 0.960 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.234 0.766 37 H 0.140 0.860 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.126 0.874 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.117 0.883 45 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -3.045 4.462 -18.895 19.652 hybrid contribution 1.268 -0.364 0.376 1.371 sum -1.777 4.099 -18.519 19.050 Atomic orbital electron populations 1.21477 0.95617 0.98239 1.02843 1.21909 0.97149 0.97664 0.98564 1.19597 0.91880 0.91011 0.89145 0.99187 1.20830 1.32082 1.13947 0.87757 0.90086 1.24825 0.96073 0.95701 0.95788 1.69991 1.38231 1.45515 0.98808 0.87325 0.84220 0.81630 0.78404 1.21001 1.21314 1.17911 1.61877 1.59836 1.01377 1.01265 1.22064 0.96394 0.99076 0.90192 1.21912 1.01512 0.94474 0.97918 1.21149 0.97110 0.92338 0.85437 1.46092 1.25624 1.56820 1.08326 1.19652 0.85001 0.79523 0.83195 1.90694 1.22762 1.45300 1.83344 1.22227 1.06140 1.02906 0.90330 1.22939 0.98027 0.98342 0.99747 1.22951 0.98234 1.02501 0.95014 1.21916 1.02098 0.98767 0.93173 1.21942 0.96161 0.89576 0.98590 0.96173 0.91021 0.93221 0.95375 0.92942 0.92740 0.96012 0.90582 0.91147 0.92131 0.90036 0.76633 0.85960 0.88242 0.87846 0.88037 0.87444 0.90731 0.91760 0.88329 0.96069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.57 9.52 37.16 0.35 -2.21 16 2 C -0.11 -2.50 4.53 -26.73 -0.12 -2.62 16 3 C 0.19 4.38 1.31 -68.87 -0.09 4.29 16 4 H -0.01 -0.22 6.97 -51.93 -0.36 -0.59 16 5 C -0.51 -13.43 7.12 -34.44 -0.25 -13.67 16 6 H 0.08 2.31 6.63 -52.49 -0.35 1.97 16 7 C 0.08 2.18 5.30 -17.82 -0.09 2.08 16 8 N -0.89 -26.10 13.96 55.43 0.77 -25.33 16 9 Si 0.86 20.89 25.73 -169.99 -4.37 16.52 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.25 -5.93 5.43 56.52 0.31 -5.62 16 13 N -0.52 -10.19 3.71 -228.08 -0.85 -11.04 16 14 C 0.05 0.90 5.22 -3.83 -0.02 0.88 16 15 C -0.12 -1.78 5.68 -26.65 -0.15 -1.93 16 16 C 0.14 2.02 2.52 -67.81 -0.17 1.84 16 17 N -0.72 -8.26 5.08 -53.69 -0.27 -8.53 16 18 C 0.54 6.83 7.58 -10.99 -0.08 6.75 16 19 O -0.54 -9.11 15.92 5.56 0.09 -9.02 16 20 C -0.19 -1.73 6.19 -91.77 -0.57 -2.30 16 21 C -0.15 -1.18 10.24 -26.69 -0.27 -1.45 16 22 C -0.15 -1.25 10.05 -26.69 -0.27 -1.51 16 23 C -0.12 -1.71 5.57 -26.64 -0.15 -1.86 16 24 C 0.07 1.20 5.21 -3.83 -0.02 1.18 16 25 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 1.68 7.17 -51.93 -0.37 1.31 16 27 H 0.05 0.97 7.66 -51.92 -0.40 0.57 16 28 H 0.03 0.55 6.43 -51.93 -0.33 0.22 16 29 H 0.05 1.21 4.58 -51.93 -0.24 0.97 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 1.32 6.07 -51.93 -0.32 1.00 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.08 1.32 7.58 -51.93 -0.39 0.93 16 36 H 0.40 3.49 8.61 -40.82 -0.35 3.14 16 37 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.62 8.14 -51.92 -0.42 0.20 16 41 H 0.11 1.09 7.67 -51.93 -0.40 0.69 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.10 2.00 6.01 -51.93 -0.31 1.69 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 343.32 15.07 5.17 5.17 Total: -1.00 -30.47 343.32 -9.06 -39.53 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -7.70 Total: 3.23 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -1.90 Total: -10.54 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: -0.35 Total: -44.90 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.09 Total: -9.02 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.37 Total: 16.52 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.47 -9.06 -39.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172275.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.096 kcal (2) G-P(sol) polarization free energy of solvation -30.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds