Wall clock time and date at job start Tue Mar 31 2020 01:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47000 * 2 1 4 4 H 1.09004 * 109.46599 * 182.69804 * 3 2 1 5 5 C 1.50696 * 109.47221 * 62.69708 * 3 2 1 6 6 H 1.08000 * 119.99929 * 240.20972 * 5 3 2 7 7 C 1.37879 * 120.00113 * 60.21592 * 5 3 2 8 8 N 1.31519 * 119.99734 * 198.03105 * 7 5 3 9 9 Si 1.86797 * 119.99998 * 17.74921 * 7 5 3 10 10 H 1.48503 * 109.47094 * 95.28389 * 9 7 5 11 11 H 1.48504 * 109.47215 * 215.28187 * 9 7 5 12 12 H 1.48502 * 109.47292 * 335.28294 * 9 7 5 13 13 N 1.46894 * 109.47008 * 302.69308 * 3 2 1 14 14 C 1.46845 * 111.00492 * 299.71346 * 13 3 2 15 15 C 1.53038 * 109.52586 * 174.15924 * 14 13 3 16 16 C 1.53117 * 109.27702 * 59.18320 * 15 14 13 17 17 N 1.46497 * 109.57534 * 182.40919 * 16 15 14 18 18 C 1.34780 * 119.99956 * 274.70973 * 17 16 15 19 19 O 1.21275 * 119.99680 * 0.02562 * 18 17 16 20 20 C 1.50696 * 119.99699 * 179.97438 * 18 17 16 21 21 C 1.53005 * 117.49741 * 248.74634 * 20 18 17 22 22 C 1.53004 * 117.49498 * 180.09018 * 20 18 17 23 23 C 1.53126 * 109.15883 * 302.34043 * 16 15 14 24 24 C 1.46848 * 110.99932 * 175.50182 * 13 3 2 25 25 H 1.09002 * 109.46882 * 183.92585 * 1 2 3 26 26 H 1.08995 * 109.47211 * 303.92944 * 1 2 3 27 27 H 1.09009 * 109.46849 * 63.93412 * 1 2 3 28 28 H 1.08996 * 109.46958 * 239.99330 * 2 1 3 29 29 H 1.09004 * 109.46573 * 119.99957 * 2 1 3 30 30 H 0.96994 * 119.99777 * 179.72847 * 8 7 5 31 31 H 1.09004 * 109.45658 * 294.17762 * 14 13 3 32 32 H 1.09001 * 109.46366 * 54.13941 * 14 13 3 33 33 H 1.08998 * 109.50517 * 299.23846 * 15 14 13 34 34 H 1.08999 * 109.50237 * 179.11375 * 15 14 13 35 35 H 1.09002 * 109.53167 * 62.24602 * 16 15 14 36 36 H 0.97003 * 120.00033 * 94.71109 * 17 16 15 37 37 H 1.08995 * 115.55619 * 34.42250 * 20 18 17 38 38 H 1.08995 * 117.49988 * 0.02562 * 21 20 18 39 39 H 1.09002 * 117.49199 * 145.02682 * 21 20 18 40 40 H 1.09008 * 117.49804 * 214.98367 * 22 20 18 41 41 H 1.08999 * 117.49763 * 359.97438 * 22 20 18 42 42 H 1.08997 * 109.50282 * 297.71815 * 23 16 15 43 43 H 1.08998 * 109.53773 * 177.61762 * 23 16 15 44 44 H 1.09003 * 109.46558 * 305.85552 * 24 13 3 45 45 H 1.09004 * 109.46457 * 65.82440 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1290 1.4428 -0.0484 5 6 1.5930 2.1333 1.2625 6 1 0.9658 3.0106 1.2049 7 6 1.9848 1.6454 2.4911 8 7 1.3360 2.0028 3.5779 9 14 3.4322 0.4707 2.6112 10 1 4.6659 1.2356 2.9245 11 1 3.1774 -0.5203 3.6875 12 1 3.6039 -0.2372 1.3171 13 7 1.4979 2.1534 -1.1655 14 6 1.9195 1.5110 -2.4169 15 6 1.2215 2.1869 -3.5993 16 6 1.5865 3.6738 -3.6190 17 7 0.8765 4.3390 -4.7142 18 6 1.3982 4.3339 -5.9570 19 8 2.4552 3.7783 -6.1685 20 6 0.6675 5.0177 -7.0836 21 6 0.0674 4.1316 -8.1771 22 6 1.3104 4.9750 -8.4714 23 6 1.1807 4.3086 -2.2860 24 6 1.8799 3.5711 -1.1416 25 1 -0.3633 -1.0253 0.0704 26 1 -0.3633 0.5736 0.8526 27 1 -0.3633 0.4516 -0.9232 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6092 1.6565 4.4417 31 1 2.9994 1.6078 -2.5288 32 1 1.6504 0.4550 -2.3916 33 1 0.1420 2.0785 -3.4950 34 1 1.5467 1.7201 -4.5290 35 1 2.6615 3.7833 -3.7623 36 1 0.0309 4.7831 -4.5450 37 1 0.1202 5.9197 -6.8101 38 1 0.2008 3.0541 -8.0813 39 1 -0.8745 4.4510 -8.6231 40 1 1.1858 5.8489 -9.1109 41 1 2.2621 4.4527 -8.5692 42 1 0.1005 4.2336 -2.1611 43 1 1.4761 5.3578 -2.2770 44 1 1.5819 4.0116 -0.1901 45 1 2.9600 3.6584 -1.2596 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172275.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:25 Heat of formation + Delta-G solvation = -30.845144 kcal Electronic energy + Delta-G solvation = -22804.009264 eV Core-core repulsion = 19628.149081 eV Total energy + Delta-G solvation = -3175.860182 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.23160 -39.96076 -37.49841 -36.63522 -34.91311 -33.70556 -31.96293 -31.34149 -28.65842 -26.22745 -25.07263 -23.93559 -23.46124 -23.23649 -21.52222 -21.06206 -20.45865 -18.47463 -18.39155 -17.64173 -16.92475 -16.19823 -16.12515 -15.77121 -15.43093 -15.34886 -15.16659 -14.94554 -14.61683 -14.27736 -14.10870 -13.77193 -13.50280 -13.22291 -12.89523 -12.86545 -12.43797 -12.41528 -12.22476 -12.12605 -11.99355 -11.86621 -11.72386 -11.53058 -11.49878 -11.37544 -11.12256 -10.86736 -10.80928 -10.48394 -10.03477 -8.95194 -8.26227 -6.19504 1.30778 1.37601 1.44548 1.50628 2.14144 2.36493 2.95635 3.03972 3.24625 3.67665 3.83248 3.87595 3.92373 4.01689 4.18053 4.26590 4.27129 4.38638 4.46507 4.51252 4.59084 4.66778 4.71178 4.76668 4.76829 4.91187 4.96472 5.00270 5.06571 5.07767 5.14554 5.17978 5.24726 5.25439 5.31271 5.42178 5.42883 5.52839 5.74393 5.84773 6.08948 6.42318 6.59671 6.74908 6.83610 7.27931 7.41702 8.89443 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.036426 B = 0.003662 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.495163 B = 7643.843843 C = 7770.075468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.117 4.117 3 C 0.193 3.807 4 H -0.022 1.022 5 C -0.498 4.498 6 H 0.048 0.952 7 C 0.028 3.972 8 N -0.934 5.934 9 Si 0.910 3.090 10 H -0.285 1.285 11 H -0.286 1.286 12 H -0.235 1.235 13 N -0.521 5.521 14 C 0.053 3.947 15 C -0.108 4.108 16 C 0.152 3.848 17 N -0.706 5.706 18 C 0.534 3.466 19 O -0.591 6.591 20 C -0.198 4.198 21 C -0.141 4.141 22 C -0.155 4.155 23 C -0.106 4.106 24 C 0.065 3.935 25 H 0.044 0.956 26 H 0.034 0.966 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.039 0.961 30 H 0.263 0.737 31 H 0.014 0.986 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.417 0.583 37 H 0.154 0.846 38 H 0.084 0.916 39 H 0.133 0.867 40 H 0.128 0.872 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.198 4.874 -21.522 22.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.155 4.155 3 C 0.085 3.915 4 H -0.005 1.005 5 C -0.536 4.536 6 H 0.067 0.933 7 C -0.170 4.170 8 N -0.574 5.574 9 Si 0.736 3.264 10 H -0.212 1.212 11 H -0.212 1.212 12 H -0.158 1.158 13 N -0.246 5.246 14 C -0.076 4.076 15 C -0.147 4.147 16 C 0.047 3.953 17 N -0.357 5.357 18 C 0.323 3.677 19 O -0.472 6.472 20 C -0.219 4.219 21 C -0.179 4.179 22 C -0.192 4.192 23 C -0.144 4.144 24 C -0.064 4.064 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.032 0.968 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.254 0.746 37 H 0.171 0.829 38 H 0.103 0.897 39 H 0.151 0.849 40 H 0.146 0.854 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.089 0.911 45 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -3.983 4.439 -21.443 22.257 hybrid contribution 1.528 -0.291 1.120 1.916 sum -2.456 4.148 -20.324 20.887 Atomic orbital electron populations 1.21343 0.94768 0.99259 1.01716 1.21881 0.97895 0.96530 0.99157 1.19463 0.91097 0.92000 0.88979 1.00481 1.20993 1.30470 1.12704 0.89399 0.93345 1.25501 0.98270 0.97713 0.95555 1.70105 1.40127 1.47770 0.99404 0.86451 0.80899 0.79890 0.79159 1.21179 1.21209 1.15850 1.61848 1.59613 1.01879 1.01215 1.22113 0.96239 0.99458 0.89768 1.21797 1.01637 0.94723 0.96545 1.20849 0.96206 0.92160 0.86131 1.45906 1.25985 1.56309 1.07469 1.20356 0.84524 0.78832 0.84014 1.90677 1.25003 1.47453 1.84084 1.22290 1.06538 1.04011 0.89050 1.23039 0.98927 0.97418 0.98471 1.23018 0.97535 1.03543 0.95132 1.21757 1.02071 0.99140 0.91438 1.21913 0.96146 0.89240 0.99107 0.93706 0.94640 0.92100 0.92775 0.94211 0.92781 0.96819 0.90101 0.90203 0.92175 0.92248 0.74612 0.82863 0.89705 0.84870 0.85436 0.89988 0.89749 0.89839 0.91124 0.96916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.52 9.52 71.98 0.69 -3.83 16 2 C -0.12 -4.89 4.53 30.59 0.14 -4.75 16 3 C 0.19 8.80 1.31 44.17 0.06 8.86 16 4 H -0.02 -1.07 6.97 -2.38 -0.02 -1.08 16 5 C -0.50 -26.97 7.12 25.60 0.18 -26.79 16 6 H 0.05 2.89 6.63 -2.91 -0.02 2.88 16 7 C 0.03 1.58 5.30 84.65 0.45 2.03 16 8 N -0.93 -56.63 13.96 21.45 0.30 -56.33 16 9 Si 0.91 43.43 25.73 68.60 1.77 45.20 16 10 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 11 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 12 H -0.24 -10.39 5.43 99.48 0.54 -9.85 16 13 N -0.52 -20.21 3.71 -875.51 -3.25 -23.46 16 14 C 0.05 1.76 5.22 86.33 0.45 2.21 16 15 C -0.11 -3.03 5.68 30.65 0.17 -2.86 16 16 C 0.15 4.03 2.52 45.07 0.11 4.14 16 17 N -0.71 -14.59 5.08 -442.15 -2.25 -16.84 16 18 C 0.53 12.61 7.58 87.66 0.66 13.28 16 19 O -0.59 -19.63 15.92 -3.01 -0.05 -19.68 16 20 C -0.20 -2.95 6.19 -11.54 -0.07 -3.02 16 21 C -0.14 -1.75 10.24 30.62 0.31 -1.44 16 22 C -0.15 -2.24 10.05 30.62 0.31 -1.93 16 23 C -0.11 -2.84 5.57 30.65 0.17 -2.67 16 24 C 0.06 2.37 5.21 86.33 0.45 2.82 16 25 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.03 1.65 7.17 -2.39 -0.02 1.63 16 27 H 0.06 2.25 7.66 -2.38 -0.02 2.23 16 28 H 0.05 1.99 6.43 -2.39 -0.02 1.98 16 29 H 0.04 1.76 4.58 -2.38 -0.01 1.75 16 30 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 31 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.08 2.61 6.07 -2.39 -0.01 2.60 16 33 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.06 1.89 7.58 -2.39 -0.02 1.87 16 36 H 0.42 5.88 8.61 -92.71 -0.80 5.09 16 37 H 0.15 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.13 1.15 8.14 -2.38 -0.02 1.13 16 41 H 0.08 1.63 7.67 -2.39 -0.02 1.61 16 42 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.07 2.98 6.01 -2.39 -0.01 2.97 16 45 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -68.48 343.32 0.61 -67.86 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: 0.01 Total: 17.18 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: 4.09 Total: -13.94 kcal Atomic # 7 Polarization: -91.43 SS G_CDS: -5.20 Total: -96.62 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.05 Total: -19.68 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.77 Total: 45.20 kcal Total: -68.48 0.61 -67.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172275.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.019 kcal (2) G-P(sol) polarization free energy of solvation -68.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds