Wall clock time and date at job start Tue Mar 31 2020 01:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47187 * 2 1 4 4 H 1.09000 * 109.46856 * 177.90505 * 3 2 1 5 5 C 1.50688 * 109.46990 * 297.90752 * 3 2 1 6 6 H 1.07999 * 120.00211 * 120.00111 * 5 3 2 7 7 C 1.37882 * 120.00342 * 299.99681 * 5 3 2 8 8 N 1.31510 * 119.99422 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00049 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47180 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46943 * 120.00352 * 9 7 5 12 12 H 1.48497 * 109.46591 * 239.99926 * 9 7 5 13 13 N 1.46904 * 109.46640 * 57.90800 * 3 2 1 14 14 C 1.46847 * 110.99998 * 54.35245 * 13 3 2 15 15 C 1.53044 * 109.52047 * 185.83627 * 14 13 3 16 16 C 1.53119 * 109.27874 * 300.81913 * 15 14 13 17 17 N 1.46503 * 109.57647 * 177.58751 * 16 15 14 18 18 C 1.34774 * 119.99573 * 85.28411 * 17 16 15 19 19 O 1.21287 * 120.00008 * 0.02562 * 18 17 16 20 20 C 1.50701 * 119.99946 * 180.02562 * 18 17 16 21 21 C 1.52998 * 117.49790 * 248.75063 * 20 18 17 22 22 C 1.52996 * 117.49813 * 180.09175 * 20 18 17 23 23 C 1.53124 * 109.16016 * 57.65311 * 16 15 14 24 24 C 1.46845 * 110.99588 * 178.56005 * 13 3 2 25 25 H 1.08997 * 109.47290 * 185.37272 * 1 2 3 26 26 H 1.09005 * 109.46948 * 305.36438 * 1 2 3 27 27 H 1.08989 * 109.47379 * 65.36798 * 1 2 3 28 28 H 1.09004 * 109.46897 * 240.00043 * 2 1 3 29 29 H 1.09002 * 109.47251 * 120.00335 * 2 1 3 30 30 H 0.97006 * 119.99838 * 180.02562 * 8 7 5 31 31 H 1.08997 * 109.46413 * 305.84728 * 14 13 3 32 32 H 1.08994 * 109.46474 * 65.82361 * 14 13 3 33 33 H 1.08992 * 109.50278 * 180.87840 * 15 14 13 34 34 H 1.09002 * 109.49958 * 60.75701 * 15 14 13 35 35 H 1.08996 * 109.52510 * 297.75476 * 16 15 14 36 36 H 0.96999 * 119.99925 * 265.29284 * 17 16 15 37 37 H 1.08996 * 115.55173 * 34.41944 * 20 18 17 38 38 H 1.09010 * 117.50164 * 359.97438 * 21 20 18 39 39 H 1.09000 * 117.50221 * 145.02259 * 21 20 18 40 40 H 1.09009 * 117.49542 * 214.97642 * 22 20 18 41 41 H 1.09003 * 117.50320 * 359.97231 * 22 20 18 42 42 H 1.09000 * 109.50743 * 182.40204 * 23 16 15 43 43 H 1.09004 * 109.50045 * 62.28775 * 23 16 15 44 44 H 1.08999 * 109.46737 * 294.17481 * 24 13 3 45 45 H 1.09007 * 109.46459 * 54.15325 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4427 0.0376 5 6 1.5805 2.1377 -1.2555 6 1 0.9568 3.0168 -1.1886 7 6 1.9564 1.6516 -2.4898 8 7 2.7156 0.5808 -2.5713 9 14 1.3873 2.5139 -4.0461 10 1 0.5490 3.6851 -3.6848 11 1 2.5699 2.9706 -4.8196 12 1 0.5903 1.5709 -4.8711 13 7 1.5094 2.1494 1.1734 14 6 1.8247 1.4249 2.4112 15 6 1.1354 2.1092 3.5940 16 6 1.6193 3.5587 3.6915 17 7 0.9207 4.2368 4.7862 18 6 1.3879 4.1390 6.0466 19 8 2.3869 3.4900 6.2745 20 6 0.6690 4.8360 7.1729 21 6 1.3753 6.0201 7.8361 22 6 1.2502 4.6884 8.5804 23 6 1.3227 4.2773 2.3723 24 6 2.0064 3.5302 1.2251 25 1 -0.3634 -1.0231 0.0962 26 1 -0.3633 0.5948 0.8381 27 1 -0.3633 0.4283 -0.9340 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.9804 0.2390 -3.4396 31 1 1.4716 0.3969 2.3304 32 1 2.9032 1.4271 2.5686 33 1 1.3823 1.5805 4.5145 34 1 0.0559 2.0952 3.4438 35 1 2.6927 3.5725 3.8804 36 1 0.1219 4.7559 4.6039 37 1 -0.4158 4.8854 7.0789 38 1 2.3601 6.2948 7.4581 39 1 0.7551 6.8484 8.1789 40 1 0.5476 4.6411 9.4126 41 1 2.1523 4.0868 8.6920 42 1 1.7032 5.2976 2.4201 43 1 0.2461 4.2975 2.2030 44 1 3.0841 3.5225 1.3880 45 1 1.7852 4.0313 0.2826 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172276.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:29 Heat of formation + Delta-G solvation = -17.142845 kcal Electronic energy + Delta-G solvation = -22732.551098 eV Core-core repulsion = 19557.285092 eV Total energy + Delta-G solvation = -3175.266006 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.14311 -38.47383 -36.43141 -35.31712 -33.35960 -31.52436 -30.48605 -29.67544 -26.48100 -24.97829 -23.50672 -22.71008 -22.53428 -21.94422 -20.27074 -19.60834 -18.79587 -17.49619 -16.34928 -16.11064 -15.42915 -15.22503 -14.59827 -14.36880 -14.18191 -13.90829 -13.55383 -13.41399 -12.95759 -12.71420 -12.45087 -12.11158 -11.84202 -11.81890 -11.56418 -11.21681 -10.94290 -10.87798 -10.80209 -10.75387 -10.67320 -10.53241 -10.35835 -10.13934 -9.91851 -9.80791 -9.58882 -9.35976 -8.96812 -8.73861 -8.38000 -7.12969 -5.99614 -4.03262 2.44979 3.11645 3.29154 3.37641 3.40926 3.64545 4.40791 4.49085 4.58785 4.63360 4.89302 4.92354 5.10678 5.22461 5.31443 5.32764 5.48556 5.51723 5.68183 5.69065 5.86827 5.89722 5.90678 6.03306 6.22758 6.23285 6.40548 6.46530 6.49042 6.59568 6.65601 6.68951 6.73038 6.80808 7.14112 7.33753 7.42173 7.53637 7.65964 7.77432 7.84760 8.21473 8.24102 8.35804 8.61552 9.02446 9.60788 11.06757 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.034659 B = 0.003585 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.669044 B = 7808.927866 C = 8218.668372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.114 4.114 3 C 0.217 3.783 4 H -0.003 1.003 5 C -0.495 4.495 6 H 0.062 0.938 7 C 0.059 3.941 8 N -0.892 5.892 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.528 5.528 14 C 0.053 3.947 15 C -0.120 4.120 16 C 0.144 3.856 17 N -0.719 5.719 18 C 0.540 3.460 19 O -0.543 6.543 20 C -0.194 4.194 21 C -0.154 4.154 22 C -0.149 4.149 23 C -0.121 4.121 24 C 0.068 3.932 25 H 0.014 0.986 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.092 0.908 29 H 0.014 0.986 30 H 0.259 0.741 31 H 0.079 0.921 32 H 0.020 0.980 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.399 0.601 37 H 0.123 0.877 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.062 0.938 43 H 0.072 0.928 44 H 0.020 0.980 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.294 8.593 16.293 19.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.152 4.152 3 C 0.111 3.889 4 H 0.015 0.985 5 C -0.533 4.533 6 H 0.081 0.919 7 C -0.142 4.142 8 N -0.532 5.532 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.211 1.211 13 N -0.254 5.254 14 C -0.076 4.076 15 C -0.159 4.159 16 C 0.040 3.960 17 N -0.369 5.369 18 C 0.326 3.674 19 O -0.420 6.420 20 C -0.215 4.215 21 C -0.192 4.192 22 C -0.187 4.187 23 C -0.159 4.159 24 C -0.061 4.061 25 H 0.033 0.967 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.110 0.890 29 H 0.033 0.967 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.038 0.962 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.233 0.767 37 H 0.140 0.860 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.126 0.874 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.038 0.962 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.985 8.022 16.247 18.793 hybrid contribution 0.138 0.557 -0.979 1.135 sum -4.847 8.579 15.268 18.171 Atomic orbital electron populations 1.21468 0.97307 0.97267 1.01818 1.21609 0.95137 0.98261 1.00194 1.19244 0.92473 0.90746 0.86438 0.98541 1.21091 1.30777 1.11848 0.89602 0.91942 1.24910 0.95255 0.95103 0.98944 1.69889 1.36422 1.22599 1.24266 0.86529 0.78376 0.79628 0.83409 1.19774 1.21252 1.21122 1.62067 1.59907 1.01138 1.02239 1.22045 0.96825 0.98661 0.90064 1.21933 1.01167 0.94659 0.98127 1.21146 0.97140 0.92337 0.85351 1.46099 1.30924 1.52882 1.06966 1.19649 0.84207 0.80309 0.83258 1.90700 1.25989 1.41621 1.83714 1.22231 1.00136 1.04894 0.94289 1.22938 1.02026 0.91573 1.02635 1.22951 1.03557 0.99705 0.92454 1.21911 1.02206 0.98294 0.93500 1.21864 0.95440 0.91003 0.97833 0.96669 0.93458 0.92725 0.88960 0.96707 0.93093 0.90298 0.96182 0.92185 0.91325 0.90075 0.76715 0.85953 0.88288 0.87876 0.88031 0.87417 0.91969 0.90886 0.96186 0.89192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.63 9.35 37.16 0.35 -2.28 16 2 C -0.11 -2.69 4.95 -26.73 -0.13 -2.82 16 3 C 0.22 5.29 1.76 -68.87 -0.12 5.17 16 4 H 0.00 -0.08 8.14 -51.93 -0.42 -0.51 16 5 C -0.49 -12.94 6.79 -34.44 -0.23 -13.17 16 6 H 0.06 1.64 6.81 -52.49 -0.36 1.28 16 7 C 0.06 1.58 5.30 -17.82 -0.09 1.48 16 8 N -0.89 -25.00 11.30 55.43 0.63 -24.37 16 9 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 10 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.53 -10.81 3.61 -228.08 -0.82 -11.63 16 14 C 0.05 0.98 4.87 -3.83 -0.02 0.96 16 15 C -0.12 -1.89 5.68 -26.65 -0.15 -2.04 16 16 C 0.14 2.10 2.52 -67.80 -0.17 1.92 16 17 N -0.72 -8.51 5.08 -53.68 -0.27 -8.78 16 18 C 0.54 7.00 7.58 -10.99 -0.08 6.92 16 19 O -0.54 -9.31 15.92 5.55 0.09 -9.23 16 20 C -0.19 -1.77 6.19 -91.77 -0.57 -2.34 16 21 C -0.15 -1.20 10.24 -26.70 -0.27 -1.47 16 22 C -0.15 -1.27 10.05 -26.70 -0.27 -1.54 16 23 C -0.12 -1.74 5.57 -26.65 -0.15 -1.89 16 24 C 0.07 1.26 5.27 -3.84 -0.02 1.24 16 25 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.05 0.98 7.10 -51.93 -0.37 0.61 16 27 H 0.05 1.27 7.47 -51.94 -0.39 0.89 16 28 H 0.09 2.45 6.02 -51.93 -0.31 2.14 16 29 H 0.01 0.32 6.33 -51.93 -0.33 -0.01 16 30 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.08 1.49 5.74 -51.93 -0.30 1.19 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.08 1.36 7.58 -51.93 -0.39 0.97 16 36 H 0.40 3.58 8.61 -40.82 -0.35 3.23 16 37 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.10 0.86 8.14 -51.92 -0.42 0.44 16 39 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.65 8.14 -51.92 -0.42 0.22 16 41 H 0.11 1.11 7.67 -51.93 -0.40 0.72 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.09 1.80 6.39 -51.93 -0.33 1.47 16 LS Contribution 348.60 15.07 5.25 5.25 Total: -1.00 -29.66 348.60 -9.82 -39.48 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -7.74 Total: 3.24 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -1.94 Total: -9.86 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: -0.47 Total: -44.78 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.66 -9.82 -39.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172276.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.341 kcal (2) G-P(sol) polarization free energy of solvation -29.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds