Wall clock time and date at job start Tue Mar 31 2020 01:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47187 * 2 1 4 4 H 1.09000 * 109.46856 * 177.90505 * 3 2 1 5 5 C 1.50688 * 109.46990 * 297.90752 * 3 2 1 6 6 H 1.07999 * 120.00211 * 120.00111 * 5 3 2 7 7 C 1.37882 * 120.00342 * 299.99681 * 5 3 2 8 8 N 1.31510 * 119.99422 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00049 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47180 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46943 * 120.00352 * 9 7 5 12 12 H 1.48497 * 109.46591 * 239.99926 * 9 7 5 13 13 N 1.46904 * 109.46640 * 57.90800 * 3 2 1 14 14 C 1.46847 * 110.99998 * 54.35245 * 13 3 2 15 15 C 1.53044 * 109.52047 * 185.83627 * 14 13 3 16 16 C 1.53119 * 109.27874 * 300.81913 * 15 14 13 17 17 N 1.46503 * 109.57647 * 177.58751 * 16 15 14 18 18 C 1.34774 * 119.99573 * 85.28411 * 17 16 15 19 19 O 1.21287 * 120.00008 * 0.02562 * 18 17 16 20 20 C 1.50701 * 119.99946 * 180.02562 * 18 17 16 21 21 C 1.52998 * 117.49790 * 248.75063 * 20 18 17 22 22 C 1.52996 * 117.49813 * 180.09175 * 20 18 17 23 23 C 1.53124 * 109.16016 * 57.65311 * 16 15 14 24 24 C 1.46845 * 110.99588 * 178.56005 * 13 3 2 25 25 H 1.08997 * 109.47290 * 185.37272 * 1 2 3 26 26 H 1.09005 * 109.46948 * 305.36438 * 1 2 3 27 27 H 1.08989 * 109.47379 * 65.36798 * 1 2 3 28 28 H 1.09004 * 109.46897 * 240.00043 * 2 1 3 29 29 H 1.09002 * 109.47251 * 120.00335 * 2 1 3 30 30 H 0.97006 * 119.99838 * 180.02562 * 8 7 5 31 31 H 1.08997 * 109.46413 * 305.84728 * 14 13 3 32 32 H 1.08994 * 109.46474 * 65.82361 * 14 13 3 33 33 H 1.08992 * 109.50278 * 180.87840 * 15 14 13 34 34 H 1.09002 * 109.49958 * 60.75701 * 15 14 13 35 35 H 1.08996 * 109.52510 * 297.75476 * 16 15 14 36 36 H 0.96999 * 119.99925 * 265.29284 * 17 16 15 37 37 H 1.08996 * 115.55173 * 34.41944 * 20 18 17 38 38 H 1.09010 * 117.50164 * 359.97438 * 21 20 18 39 39 H 1.09000 * 117.50221 * 145.02259 * 21 20 18 40 40 H 1.09009 * 117.49542 * 214.97642 * 22 20 18 41 41 H 1.09003 * 117.50320 * 359.97231 * 22 20 18 42 42 H 1.09000 * 109.50743 * 182.40204 * 23 16 15 43 43 H 1.09004 * 109.50045 * 62.28775 * 23 16 15 44 44 H 1.08999 * 109.46737 * 294.17481 * 24 13 3 45 45 H 1.09007 * 109.46459 * 54.15325 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4427 0.0376 5 6 1.5805 2.1377 -1.2555 6 1 0.9568 3.0168 -1.1886 7 6 1.9564 1.6516 -2.4898 8 7 2.7156 0.5808 -2.5713 9 14 1.3873 2.5139 -4.0461 10 1 0.5490 3.6851 -3.6848 11 1 2.5699 2.9706 -4.8196 12 1 0.5903 1.5709 -4.8711 13 7 1.5094 2.1494 1.1734 14 6 1.8247 1.4249 2.4112 15 6 1.1354 2.1092 3.5940 16 6 1.6193 3.5587 3.6915 17 7 0.9207 4.2368 4.7862 18 6 1.3879 4.1390 6.0466 19 8 2.3869 3.4900 6.2745 20 6 0.6690 4.8360 7.1729 21 6 1.3753 6.0201 7.8361 22 6 1.2502 4.6884 8.5804 23 6 1.3227 4.2773 2.3723 24 6 2.0064 3.5302 1.2251 25 1 -0.3634 -1.0231 0.0962 26 1 -0.3633 0.5948 0.8381 27 1 -0.3633 0.4283 -0.9340 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.9804 0.2390 -3.4396 31 1 1.4716 0.3969 2.3304 32 1 2.9032 1.4271 2.5686 33 1 1.3823 1.5805 4.5145 34 1 0.0559 2.0952 3.4438 35 1 2.6927 3.5725 3.8804 36 1 0.1219 4.7559 4.6039 37 1 -0.4158 4.8854 7.0789 38 1 2.3601 6.2948 7.4581 39 1 0.7551 6.8484 8.1789 40 1 0.5476 4.6411 9.4126 41 1 2.1523 4.0868 8.6920 42 1 1.7032 5.2976 2.4201 43 1 0.2461 4.2975 2.2030 44 1 3.0841 3.5225 1.3880 45 1 1.7852 4.0313 0.2826 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172276.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:28 Heat of formation + Delta-G solvation = -35.624109 kcal Electronic energy + Delta-G solvation = -22733.352506 eV Core-core repulsion = 19557.285092 eV Total energy + Delta-G solvation = -3176.067414 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.22406 -39.90361 -37.45601 -36.61598 -34.94433 -33.34048 -31.95251 -31.19120 -28.31224 -26.28748 -25.09195 -24.01584 -23.40696 -23.24730 -21.49027 -20.98176 -20.39039 -18.40012 -18.12096 -17.65230 -16.85695 -16.31671 -15.93194 -15.74896 -15.56444 -15.28753 -15.08619 -14.93962 -14.43086 -14.03512 -13.84867 -13.61733 -13.50529 -13.12081 -12.81497 -12.80185 -12.43054 -12.37504 -12.28057 -12.09271 -12.03619 -11.80667 -11.56871 -11.54947 -11.50274 -11.36597 -11.23467 -10.79822 -10.74644 -10.44064 -10.02933 -8.90462 -8.05955 -6.16073 1.42500 1.45209 1.50410 1.55815 2.14147 2.44854 2.95033 3.21436 3.34267 3.68018 3.83323 3.89609 3.91498 4.01445 4.19092 4.27000 4.30290 4.44599 4.55339 4.62230 4.69240 4.74726 4.76234 4.79554 4.88610 4.92922 4.97606 5.03658 5.06421 5.13226 5.15285 5.24730 5.29621 5.30047 5.47690 5.52654 5.52875 5.75965 5.78977 5.90039 6.34053 6.44127 6.60237 6.75960 6.97399 7.28627 7.51830 8.99970 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.034659 B = 0.003585 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.669044 B = 7808.927866 C = 8218.668372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.110 4.110 3 C 0.222 3.778 4 H -0.049 1.049 5 C -0.499 4.499 6 H 0.062 0.938 7 C 0.011 3.989 8 N -0.923 5.923 9 Si 0.954 3.046 10 H -0.263 1.263 11 H -0.286 1.286 12 H -0.284 1.284 13 N -0.523 5.523 14 C 0.055 3.945 15 C -0.107 4.107 16 C 0.152 3.848 17 N -0.705 5.705 18 C 0.533 3.467 19 O -0.593 6.593 20 C -0.197 4.197 21 C -0.141 4.141 22 C -0.156 4.156 23 C -0.104 4.104 24 C 0.065 3.935 25 H 0.036 0.964 26 H 0.058 0.942 27 H 0.034 0.966 28 H 0.061 0.939 29 H 0.025 0.975 30 H 0.258 0.742 31 H 0.075 0.925 32 H 0.002 0.998 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.055 0.945 36 H 0.418 0.582 37 H 0.155 0.845 38 H 0.083 0.917 39 H 0.135 0.865 40 H 0.128 0.872 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.003 0.997 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.950 10.532 17.574 21.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.149 4.149 3 C 0.115 3.885 4 H -0.032 1.032 5 C -0.537 4.537 6 H 0.080 0.920 7 C -0.188 4.188 8 N -0.563 5.563 9 Si 0.780 3.220 10 H -0.187 1.187 11 H -0.213 1.213 12 H -0.210 1.210 13 N -0.248 5.248 14 C -0.074 4.074 15 C -0.146 4.146 16 C 0.047 3.953 17 N -0.355 5.355 18 C 0.322 3.678 19 O -0.474 6.474 20 C -0.218 4.218 21 C -0.178 4.178 22 C -0.193 4.193 23 C -0.142 4.142 24 C -0.064 4.064 25 H 0.055 0.945 26 H 0.077 0.923 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.043 0.957 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.020 0.980 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.255 0.745 37 H 0.173 0.827 38 H 0.102 0.898 39 H 0.153 0.847 40 H 0.146 0.854 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.022 0.978 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.681 9.997 17.541 21.602 hybrid contribution 1.045 -0.064 -1.332 1.694 sum -6.636 9.934 16.209 20.136 Atomic orbital electron populations 1.21318 0.95311 0.98726 1.01125 1.21488 0.96774 0.97471 0.99157 1.19041 0.89795 0.91800 0.87881 1.03199 1.21298 1.30327 1.11715 0.90384 0.91967 1.25662 0.95431 0.95728 1.01932 1.70036 1.37565 1.23936 1.24782 0.85556 0.77876 0.78811 0.79709 1.18689 1.21275 1.20975 1.62058 1.59193 1.01842 1.01692 1.22062 0.96174 0.98817 0.90380 1.21800 1.01434 0.95102 0.96280 1.20828 0.96037 0.92033 0.86437 1.45882 1.31194 1.52433 1.06020 1.20399 0.83647 0.79640 0.84160 1.90686 1.28339 1.43880 1.84467 1.22287 1.01387 1.05370 0.92709 1.23043 1.01647 0.91910 1.01240 1.23020 1.03190 1.00024 0.93086 1.21758 1.02659 0.98579 0.91239 1.21910 0.95067 0.90295 0.99166 0.94468 0.92335 0.94682 0.92055 0.95674 0.93232 0.90652 0.97952 0.92507 0.89962 0.92680 0.74498 0.82722 0.89798 0.84731 0.85371 0.90096 0.89628 0.89258 0.97843 0.90617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.57 9.35 71.98 0.67 -3.90 16 2 C -0.11 -5.33 4.95 30.59 0.15 -5.18 16 3 C 0.22 11.16 1.76 44.17 0.08 11.24 16 4 H -0.05 -2.89 8.14 -2.39 -0.02 -2.91 16 5 C -0.50 -26.51 6.79 25.60 0.17 -26.33 16 6 H 0.06 3.25 6.81 -2.91 -0.02 3.24 16 7 C 0.01 0.57 5.30 84.66 0.45 1.02 16 8 N -0.92 -53.19 11.30 21.45 0.24 -52.95 16 9 Si 0.95 43.14 29.54 68.60 2.03 45.17 16 10 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 11 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 N -0.52 -21.55 3.61 -875.51 -3.16 -24.71 16 14 C 0.05 2.04 4.87 86.33 0.42 2.46 16 15 C -0.11 -3.25 5.68 30.65 0.17 -3.08 16 16 C 0.15 4.23 2.52 45.07 0.11 4.34 16 17 N -0.70 -14.96 5.08 -442.14 -2.25 -17.21 16 18 C 0.53 13.01 7.58 87.66 0.66 13.68 16 19 O -0.59 -20.46 15.92 -3.05 -0.05 -20.51 16 20 C -0.20 -3.00 6.19 -11.54 -0.07 -3.08 16 21 C -0.14 -1.78 10.24 30.62 0.31 -1.46 16 22 C -0.16 -2.33 10.05 30.62 0.31 -2.02 16 23 C -0.10 -2.79 5.57 30.65 0.17 -2.62 16 24 C 0.06 2.41 5.27 86.33 0.45 2.86 16 25 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.06 2.33 7.10 -2.38 -0.02 2.31 16 27 H 0.03 1.60 7.47 -2.39 -0.02 1.58 16 28 H 0.06 3.36 6.02 -2.39 -0.01 3.35 16 29 H 0.02 1.12 6.33 -2.39 -0.02 1.11 16 30 H 0.26 14.25 8.31 -92.70 -0.77 13.48 16 31 H 0.08 2.85 5.74 -2.39 -0.01 2.83 16 32 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 33 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.05 1.86 7.58 -2.39 -0.02 1.84 16 36 H 0.42 5.88 8.61 -92.71 -0.80 5.08 16 37 H 0.16 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.13 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.08 1.67 7.67 -2.39 -0.02 1.65 16 42 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 44 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 45 H 0.08 3.03 6.39 -2.38 -0.02 3.02 16 Total: -1.00 -67.18 348.60 1.05 -66.13 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 0.17 Total: 16.15 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: 4.07 Total: -12.07 kcal Atomic # 7 Polarization: -89.71 SS G_CDS: -5.17 Total: -94.87 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.05 Total: -20.51 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -67.18 1.05 -66.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172276.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.505 kcal (2) G-P(sol) polarization free energy of solvation -67.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds