Wall clock time and date at job start Tue Mar 31 2020 01:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47260 * 2 1 4 4 H 1.08998 * 109.47109 * 178.79267 * 3 2 1 5 5 C 1.50693 * 109.47355 * 298.79716 * 3 2 1 6 6 H 1.08003 * 119.99973 * 115.59711 * 5 3 2 7 7 C 1.37880 * 119.99979 * 295.60003 * 5 3 2 8 8 N 1.31508 * 119.99837 * 353.86186 * 7 5 3 9 9 Si 1.86806 * 119.99685 * 174.13670 * 7 5 3 10 10 H 1.48503 * 109.46870 * 179.72420 * 9 7 5 11 11 H 1.48491 * 109.47399 * 299.72283 * 9 7 5 12 12 H 1.48502 * 109.47058 * 59.72775 * 9 7 5 13 13 N 1.46901 * 109.46881 * 58.79814 * 3 2 1 14 14 C 1.46841 * 111.00112 * 55.02359 * 13 3 2 15 15 C 1.53044 * 109.53320 * 185.80305 * 14 13 3 16 16 C 1.53131 * 109.25771 * 300.80464 * 15 14 13 17 17 C 1.53084 * 109.34870 * 177.25496 * 16 15 14 18 18 C 1.53365 * 108.39337 * 169.41564 * 17 16 15 19 19 C 1.52912 * 108.65837 * 292.39801 * 18 17 16 20 20 N 1.45752 * 110.50527 * 50.68150 * 19 18 17 21 21 C 1.33340 * 124.12495 * 341.02250 * 20 19 18 22 22 O 1.21283 * 118.25523 * 182.26887 * 21 20 19 23 23 C 1.53146 * 109.10925 * 57.74659 * 16 15 14 24 24 C 1.46844 * 110.99902 * 179.26174 * 13 3 2 25 25 H 1.08997 * 109.47506 * 185.05350 * 1 2 3 26 26 H 1.08999 * 109.47546 * 305.06004 * 1 2 3 27 27 H 1.09007 * 109.46882 * 65.05542 * 1 2 3 28 28 H 1.09004 * 109.46670 * 239.99808 * 2 1 3 29 29 H 1.09000 * 109.46887 * 120.00415 * 2 1 3 30 30 H 0.96992 * 120.00187 * 355.28520 * 8 7 5 31 31 H 1.09002 * 109.45909 * 305.81850 * 14 13 3 32 32 H 1.08996 * 109.46241 * 65.78416 * 14 13 3 33 33 H 1.08998 * 109.50744 * 180.86306 * 15 14 13 34 34 H 1.09001 * 109.54043 * 60.75716 * 15 14 13 35 35 H 1.09005 * 109.67534 * 289.12753 * 17 16 15 36 36 H 1.08994 * 109.68381 * 49.67349 * 17 16 15 37 37 H 1.08999 * 109.60615 * 172.65221 * 18 17 16 38 38 H 1.08996 * 109.62156 * 52.15422 * 18 17 16 39 39 H 1.08998 * 109.26871 * 290.41426 * 19 18 17 40 40 H 1.09003 * 109.24052 * 170.92889 * 19 18 17 41 41 H 0.97004 * 117.93562 * 160.99887 * 20 19 18 42 42 H 1.09005 * 109.50998 * 182.29107 * 23 16 15 43 43 H 1.09008 * 109.50454 * 62.16163 * 23 16 15 44 44 H 1.08998 * 109.46145 * 294.19101 * 24 13 3 45 45 H 1.08994 * 109.46218 * 54.17681 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1298 1.4425 0.0217 5 6 1.5623 2.1442 -1.2450 6 1 0.8823 2.9797 -1.1668 7 6 1.9931 1.7197 -2.4841 8 7 2.9121 0.7834 -2.5754 9 14 1.2770 2.4800 -4.0329 10 1 1.9072 1.8595 -5.2258 11 1 -0.1886 2.2441 -4.0682 12 1 1.5435 3.9409 -4.0359 13 7 1.5268 2.1433 1.1847 14 6 1.8738 1.4207 2.4150 15 6 1.2031 2.0978 3.6125 16 6 1.6766 3.5513 3.7014 17 6 0.9553 4.2499 4.8569 18 6 1.6282 5.6069 5.0976 19 6 3.0390 5.3647 5.6353 20 7 3.7535 4.4193 4.7868 21 6 3.1606 3.5854 3.9317 22 8 3.8564 2.8130 3.3071 23 6 1.3440 4.2680 2.3895 24 6 2.0111 3.5289 1.2274 25 1 -0.3634 -1.0236 0.0905 26 1 -0.3634 0.5903 0.8412 27 1 -0.3633 0.4334 -0.9319 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.3359 0.4400 -1.7734 31 1 1.5283 0.3896 2.3403 32 1 2.9553 1.4323 2.5502 33 1 1.4733 1.5703 4.5273 34 1 0.1208 2.0747 3.4853 35 1 -0.0927 4.4009 4.5976 36 1 1.0269 3.6396 5.7570 37 1 1.0519 6.1767 5.8265 38 1 1.6842 6.1593 4.1597 39 1 2.9746 4.9630 6.6465 40 1 3.5820 6.3096 5.6577 41 1 4.7214 4.3954 4.8477 42 1 1.7146 5.2923 2.4302 43 1 0.2638 4.2767 2.2432 44 1 3.0920 3.5315 1.3679 45 1 1.7654 4.0285 0.2904 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255174560.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:48 Heat of formation + Delta-G solvation = -38.186047 kcal Electronic energy + Delta-G solvation = -24166.096172 eV Core-core repulsion = 20989.917664 eV Total energy + Delta-G solvation = -3176.178508 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.05351 -37.68806 -36.57148 -35.08204 -32.58161 -31.20977 -30.59096 -29.86393 -27.31197 -25.29416 -23.68640 -23.09760 -22.95009 -21.95821 -20.49979 -18.97976 -18.21301 -17.25379 -16.61140 -15.68589 -15.51460 -15.19226 -14.42093 -14.01078 -13.84897 -13.78120 -13.65821 -13.58787 -13.39365 -12.74288 -12.28556 -12.15701 -11.80345 -11.78430 -11.62463 -11.27212 -11.23929 -11.16328 -10.86145 -10.71617 -10.53439 -10.28544 -10.02164 -10.01524 -9.84710 -9.61679 -9.38898 -9.11480 -9.04132 -8.25873 -8.22812 -6.88966 -6.18852 -3.88382 2.81333 3.26555 3.50323 3.52622 3.70938 4.46224 4.54363 4.56824 4.62515 4.73057 5.08624 5.11567 5.13528 5.23586 5.41198 5.51115 5.51561 5.58329 5.75375 5.83246 5.92690 6.02854 6.06214 6.17632 6.23585 6.27316 6.35882 6.51346 6.59654 6.64119 6.73585 6.81042 6.88940 6.97092 7.05572 7.27344 7.36651 7.41385 7.56277 7.62623 8.12567 8.25878 8.41894 8.58841 8.76737 9.04097 9.80694 11.16577 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025815 B = 0.005213 C = 0.004982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.367101 B = 5369.420621 C = 5618.530275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.116 4.116 3 C 0.208 3.792 4 H -0.013 1.013 5 C -0.572 4.572 6 H 0.054 0.946 7 C 0.018 3.982 8 N -0.916 5.916 9 Si 1.064 2.936 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.291 1.291 13 N -0.517 5.517 14 C 0.025 3.975 15 C -0.088 4.088 16 C -0.069 4.069 17 C -0.115 4.115 18 C -0.140 4.140 19 C 0.112 3.888 20 N -0.728 5.728 21 C 0.525 3.475 22 O -0.530 6.530 23 C -0.096 4.096 24 C 0.061 3.939 25 H 0.016 0.984 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.022 0.978 30 H 0.270 0.730 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.395 0.605 42 H 0.057 0.943 43 H 0.079 0.921 44 H 0.030 0.970 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.167 9.338 17.807 20.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.154 4.154 3 C 0.101 3.899 4 H 0.005 0.995 5 C -0.611 4.611 6 H 0.072 0.928 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.893 3.107 10 H -0.211 1.211 11 H -0.215 1.215 12 H -0.218 1.218 13 N -0.242 5.242 14 C -0.103 4.103 15 C -0.127 4.127 16 C -0.072 4.072 17 C -0.152 4.152 18 C -0.177 4.177 19 C -0.012 4.012 20 N -0.381 5.381 21 C 0.312 3.688 22 O -0.407 6.407 23 C -0.134 4.134 24 C -0.068 4.068 25 H 0.035 0.965 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.041 0.959 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.230 0.770 42 H 0.076 0.924 43 H 0.097 0.903 44 H 0.048 0.952 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.537 8.853 15.756 18.416 hybrid contribution 1.249 0.197 1.948 2.322 sum -2.288 9.050 17.704 20.014 Atomic orbital electron populations 1.21429 0.96459 0.97426 1.02306 1.21640 0.96272 0.98549 0.98942 1.19282 0.92095 0.90583 0.87944 0.99530 1.21827 1.30222 1.17853 0.91205 0.92807 1.25659 0.95759 0.95857 1.01253 1.70757 1.24378 1.27121 1.33058 0.83628 0.75775 0.75412 0.75908 1.21055 1.21520 1.21753 1.61967 1.59488 1.00996 1.01765 1.22525 1.00683 0.97215 0.89836 1.21477 1.00921 0.91789 0.98473 1.20726 0.90444 0.98843 0.97221 1.21797 1.00180 0.95453 0.97798 1.21935 0.94949 0.98321 1.02538 1.21325 0.93654 0.92615 0.93633 1.45579 1.10637 1.39551 1.42309 1.20244 0.91198 0.79243 0.78100 1.90674 1.64619 1.38755 1.46603 1.21652 1.02083 0.97311 0.92374 1.21938 0.96625 0.90919 0.97298 0.96511 0.93040 0.92387 0.91796 0.95928 0.91897 0.91727 0.91347 0.92763 0.90787 0.90376 0.91482 0.90007 0.90542 0.92071 0.90952 0.77013 0.92419 0.90264 0.95197 0.89954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 9.43 37.16 0.35 -2.32 16 2 C -0.12 -2.85 4.85 -26.73 -0.13 -2.98 16 3 C 0.21 5.43 1.39 -68.87 -0.10 5.33 16 4 H -0.01 -0.38 7.55 -51.93 -0.39 -0.77 16 5 C -0.57 -16.01 6.58 -34.44 -0.23 -16.24 16 6 H 0.05 1.52 6.95 -52.48 -0.36 1.15 16 7 C 0.02 0.53 5.24 -17.82 -0.09 0.43 16 8 N -0.92 -27.99 12.83 55.43 0.71 -27.28 16 9 Si 1.06 25.63 29.91 -169.99 -5.08 20.55 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 13 N -0.52 -11.53 3.63 -228.09 -0.83 -12.36 16 14 C 0.03 0.51 4.73 -3.83 -0.02 0.49 16 15 C -0.09 -1.39 4.82 -26.64 -0.13 -1.52 16 16 C -0.07 -0.97 0.53 -155.71 -0.08 -1.06 16 17 C -0.11 -1.14 4.76 -26.50 -0.13 -1.26 16 18 C -0.14 -1.10 5.98 -26.59 -0.16 -1.26 16 19 C 0.11 0.86 7.17 -4.49 -0.03 0.83 16 20 N -0.73 -8.30 5.45 -61.38 -0.33 -8.63 16 21 C 0.52 8.10 6.23 -11.86 -0.07 8.02 16 22 O -0.53 -10.61 12.37 5.56 0.07 -10.54 16 23 C -0.10 -1.51 4.64 -26.64 -0.12 -1.63 16 24 C 0.06 1.27 5.01 -3.84 -0.02 1.25 16 25 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 1.11 7.30 -51.93 -0.38 0.73 16 27 H 0.06 1.41 7.44 -51.93 -0.39 1.02 16 28 H 0.06 1.73 6.20 -51.93 -0.32 1.41 16 29 H 0.02 0.52 6.28 -51.93 -0.33 0.19 16 30 H 0.27 8.34 6.08 -40.82 -0.25 8.10 16 31 H 0.06 1.32 5.86 -51.93 -0.30 1.01 16 32 H 0.07 1.55 5.03 -51.93 -0.26 1.29 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 36 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.67 6.49 -51.93 -0.34 0.33 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.39 4.17 8.80 -40.82 -0.36 3.81 16 42 H 0.06 0.81 6.68 -51.93 -0.35 0.46 16 43 H 0.08 1.21 8.14 -51.92 -0.42 0.79 16 44 H 0.03 0.70 6.23 -51.93 -0.32 0.37 16 45 H 0.08 1.88 6.43 -51.93 -0.33 1.54 16 LS Contribution 323.34 15.07 4.87 4.87 Total: -1.00 -32.71 323.34 -8.83 -41.54 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -7.28 Total: 3.74 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -0.96 Total: -11.90 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: -0.45 Total: -48.27 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.07 Total: -10.54 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -5.08 Total: 20.55 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.71 -8.83 -41.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174560.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.358 kcal (2) G-P(sol) polarization free energy of solvation -32.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds