Wall clock time and date at job start Tue Mar 31 2020 01:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47260 * 2 1 4 4 H 1.08998 * 109.47109 * 178.79267 * 3 2 1 5 5 C 1.50693 * 109.47355 * 298.79716 * 3 2 1 6 6 H 1.08003 * 119.99973 * 115.59711 * 5 3 2 7 7 C 1.37880 * 119.99979 * 295.60003 * 5 3 2 8 8 N 1.31508 * 119.99837 * 353.86186 * 7 5 3 9 9 Si 1.86806 * 119.99685 * 174.13670 * 7 5 3 10 10 H 1.48503 * 109.46870 * 179.72420 * 9 7 5 11 11 H 1.48491 * 109.47399 * 299.72283 * 9 7 5 12 12 H 1.48502 * 109.47058 * 59.72775 * 9 7 5 13 13 N 1.46901 * 109.46881 * 58.79814 * 3 2 1 14 14 C 1.46841 * 111.00112 * 55.02359 * 13 3 2 15 15 C 1.53044 * 109.53320 * 185.80305 * 14 13 3 16 16 C 1.53131 * 109.25771 * 300.80464 * 15 14 13 17 17 C 1.53084 * 109.34870 * 177.25496 * 16 15 14 18 18 C 1.53365 * 108.39337 * 169.41564 * 17 16 15 19 19 C 1.52912 * 108.65837 * 292.39801 * 18 17 16 20 20 N 1.45752 * 110.50527 * 50.68150 * 19 18 17 21 21 C 1.33340 * 124.12495 * 341.02250 * 20 19 18 22 22 O 1.21283 * 118.25523 * 182.26887 * 21 20 19 23 23 C 1.53146 * 109.10925 * 57.74659 * 16 15 14 24 24 C 1.46844 * 110.99902 * 179.26174 * 13 3 2 25 25 H 1.08997 * 109.47506 * 185.05350 * 1 2 3 26 26 H 1.08999 * 109.47546 * 305.06004 * 1 2 3 27 27 H 1.09007 * 109.46882 * 65.05542 * 1 2 3 28 28 H 1.09004 * 109.46670 * 239.99808 * 2 1 3 29 29 H 1.09000 * 109.46887 * 120.00415 * 2 1 3 30 30 H 0.96992 * 120.00187 * 355.28520 * 8 7 5 31 31 H 1.09002 * 109.45909 * 305.81850 * 14 13 3 32 32 H 1.08996 * 109.46241 * 65.78416 * 14 13 3 33 33 H 1.08998 * 109.50744 * 180.86306 * 15 14 13 34 34 H 1.09001 * 109.54043 * 60.75716 * 15 14 13 35 35 H 1.09005 * 109.67534 * 289.12753 * 17 16 15 36 36 H 1.08994 * 109.68381 * 49.67349 * 17 16 15 37 37 H 1.08999 * 109.60615 * 172.65221 * 18 17 16 38 38 H 1.08996 * 109.62156 * 52.15422 * 18 17 16 39 39 H 1.08998 * 109.26871 * 290.41426 * 19 18 17 40 40 H 1.09003 * 109.24052 * 170.92889 * 19 18 17 41 41 H 0.97004 * 117.93562 * 160.99887 * 20 19 18 42 42 H 1.09005 * 109.50998 * 182.29107 * 23 16 15 43 43 H 1.09008 * 109.50454 * 62.16163 * 23 16 15 44 44 H 1.08998 * 109.46145 * 294.19101 * 24 13 3 45 45 H 1.08994 * 109.46218 * 54.17681 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1298 1.4425 0.0217 5 6 1.5623 2.1442 -1.2450 6 1 0.8823 2.9797 -1.1668 7 6 1.9931 1.7197 -2.4841 8 7 2.9121 0.7834 -2.5754 9 14 1.2770 2.4800 -4.0329 10 1 1.9072 1.8595 -5.2258 11 1 -0.1886 2.2441 -4.0682 12 1 1.5435 3.9409 -4.0359 13 7 1.5268 2.1433 1.1847 14 6 1.8738 1.4207 2.4150 15 6 1.2031 2.0978 3.6125 16 6 1.6766 3.5513 3.7014 17 6 0.9553 4.2499 4.8569 18 6 1.6282 5.6069 5.0976 19 6 3.0390 5.3647 5.6353 20 7 3.7535 4.4193 4.7868 21 6 3.1606 3.5854 3.9317 22 8 3.8564 2.8130 3.3071 23 6 1.3440 4.2680 2.3895 24 6 2.0111 3.5289 1.2274 25 1 -0.3634 -1.0236 0.0905 26 1 -0.3634 0.5903 0.8412 27 1 -0.3633 0.4334 -0.9319 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.3359 0.4400 -1.7734 31 1 1.5283 0.3896 2.3403 32 1 2.9553 1.4323 2.5502 33 1 1.4733 1.5703 4.5273 34 1 0.1208 2.0747 3.4853 35 1 -0.0927 4.4009 4.5976 36 1 1.0269 3.6396 5.7570 37 1 1.0519 6.1767 5.8265 38 1 1.6842 6.1593 4.1597 39 1 2.9746 4.9630 6.6465 40 1 3.5820 6.3096 5.6577 41 1 4.7214 4.3954 4.8477 42 1 1.7146 5.2923 2.4302 43 1 0.2638 4.2767 2.2432 44 1 3.0920 3.5315 1.3679 45 1 1.7654 4.0285 0.2904 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255174560.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:47 Heat of formation + Delta-G solvation = -61.533288 kcal Electronic energy + Delta-G solvation = -24167.108585 eV Core-core repulsion = 20989.917664 eV Total energy + Delta-G solvation = -3177.190920 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.22746 -39.31946 -37.63654 -36.64212 -34.26838 -32.97584 -31.86776 -31.27766 -28.75200 -27.02758 -25.51645 -24.35750 -24.13609 -23.37211 -21.96467 -20.86527 -19.23847 -18.72213 -18.23661 -17.04558 -16.76802 -16.48935 -15.78575 -15.65445 -15.51600 -15.24252 -15.12870 -14.78622 -14.59924 -14.12922 -13.86911 -13.75994 -13.25708 -13.15060 -13.03601 -12.87868 -12.63153 -12.60624 -12.23998 -12.19980 -11.96272 -11.94872 -11.87464 -11.78539 -11.56151 -11.24433 -10.94655 -10.55205 -10.40238 -10.30401 -9.99296 -8.79998 -8.51953 -6.22309 1.52912 1.61655 1.64952 1.80184 2.33591 2.60119 3.22844 3.34229 3.57633 3.65416 3.71055 3.92889 4.10464 4.22695 4.33090 4.37685 4.46459 4.51785 4.56838 4.64823 4.66590 4.72333 4.77310 4.79607 4.91821 4.95269 4.99253 5.05025 5.09693 5.14784 5.18161 5.20834 5.25996 5.34610 5.40980 5.44489 5.53272 5.69771 5.91313 6.02030 6.13857 6.38107 6.53890 6.58518 6.82942 7.31821 7.56302 8.82072 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025815 B = 0.005213 C = 0.004982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.367101 B = 5369.420621 C = 5618.530275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.109 4.109 3 C 0.211 3.789 4 H -0.070 1.070 5 C -0.572 4.572 6 H 0.051 0.949 7 C -0.033 4.033 8 N -0.940 5.940 9 Si 1.112 2.888 10 H -0.289 1.289 11 H -0.268 1.268 12 H -0.274 1.274 13 N -0.509 5.509 14 C 0.024 3.976 15 C -0.082 4.082 16 C -0.067 4.067 17 C -0.108 4.108 18 C -0.138 4.138 19 C 0.103 3.897 20 N -0.718 5.718 21 C 0.516 3.484 22 O -0.591 6.591 23 C -0.084 4.084 24 C 0.062 3.938 25 H 0.044 0.956 26 H 0.062 0.938 27 H 0.037 0.963 28 H 0.033 0.967 29 H 0.033 0.967 30 H 0.252 0.748 31 H 0.057 0.943 32 H 0.041 0.959 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.117 0.883 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.397 0.603 42 H 0.078 0.922 43 H 0.093 0.907 44 H -0.003 1.003 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.769 11.521 20.325 24.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.148 4.148 3 C 0.104 3.896 4 H -0.053 1.053 5 C -0.610 4.610 6 H 0.070 0.930 7 C -0.230 4.230 8 N -0.579 5.579 9 Si 0.934 3.066 10 H -0.214 1.214 11 H -0.193 1.193 12 H -0.199 1.199 13 N -0.233 5.233 14 C -0.104 4.104 15 C -0.120 4.120 16 C -0.071 4.071 17 C -0.145 4.145 18 C -0.175 4.175 19 C -0.019 4.019 20 N -0.368 5.368 21 C 0.304 3.696 22 O -0.472 6.472 23 C -0.122 4.122 24 C -0.067 4.067 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.099 0.901 37 H 0.135 0.865 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.115 0.885 41 H 0.232 0.768 42 H 0.096 0.904 43 H 0.111 0.889 44 H 0.015 0.985 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.158 11.089 18.352 22.309 hybrid contribution 2.163 -0.452 1.257 2.542 sum -3.995 10.637 19.609 22.663 Atomic orbital electron populations 1.21287 0.94063 0.99269 1.01589 1.21515 0.98185 0.97145 0.97948 1.19130 0.88764 0.92134 0.89607 1.05310 1.22031 1.29419 1.17522 0.92031 0.93044 1.27146 0.95382 0.95593 1.04928 1.70888 1.26001 1.28915 1.32051 0.83009 0.76137 0.75429 0.71997 1.21434 1.19272 1.19931 1.62013 1.58414 1.01511 1.01377 1.22555 0.99712 0.97363 0.90720 1.21442 1.01189 0.92818 0.96579 1.20718 0.90131 0.98005 0.98199 1.21791 1.00486 0.96225 0.95993 1.21988 0.95025 0.97267 1.03220 1.21712 0.93734 0.92797 0.93691 1.45634 1.11162 1.38799 1.41219 1.20586 0.91743 0.79171 0.78125 1.90670 1.65877 1.41515 1.49151 1.21567 1.02163 0.97668 0.90844 1.21919 0.95334 0.90649 0.98749 0.93687 0.91943 0.94381 0.94794 0.94886 0.93796 0.92436 0.94156 0.91067 0.89247 0.88817 0.90102 0.86512 0.91404 0.89823 0.88516 0.76760 0.90355 0.88895 0.98496 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.68 9.43 71.98 0.68 -4.00 16 2 C -0.11 -5.63 4.85 30.59 0.15 -5.48 16 3 C 0.21 11.73 1.39 44.17 0.06 11.79 16 4 H -0.07 -4.62 7.55 -2.39 -0.02 -4.64 16 5 C -0.57 -33.24 6.58 25.60 0.17 -33.07 16 6 H 0.05 2.97 6.95 -2.91 -0.02 2.95 16 7 C -0.03 -1.98 5.24 84.66 0.44 -1.53 16 8 N -0.94 -60.30 12.83 21.45 0.28 -60.02 16 9 Si 1.11 52.22 29.91 68.60 2.05 54.27 16 10 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 11 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 13 N -0.51 -23.50 3.63 -875.55 -3.18 -26.68 16 14 C 0.02 1.01 4.73 86.33 0.41 1.41 16 15 C -0.08 -2.45 4.82 30.65 0.15 -2.30 16 16 C -0.07 -1.76 0.53 -52.96 -0.03 -1.79 16 17 C -0.11 -1.63 4.76 30.74 0.15 -1.49 16 18 C -0.14 -1.47 5.98 30.69 0.18 -1.29 16 19 C 0.10 1.14 7.17 86.49 0.62 1.76 16 20 N -0.72 -15.01 5.45 -467.30 -2.55 -17.55 16 21 C 0.52 15.64 6.23 87.73 0.55 16.19 16 22 O -0.59 -24.88 12.37 -3.04 -0.04 -24.92 16 23 C -0.08 -2.53 4.64 30.65 0.14 -2.39 16 24 C 0.06 2.71 5.01 86.33 0.43 3.14 16 25 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.06 2.62 7.30 -2.39 -0.02 2.61 16 27 H 0.04 1.83 7.44 -2.38 -0.02 1.81 16 28 H 0.03 1.93 6.20 -2.39 -0.01 1.91 16 29 H 0.03 1.59 6.28 -2.39 -0.01 1.57 16 30 H 0.25 16.76 6.08 -92.71 -0.56 16.19 16 31 H 0.06 2.40 5.86 -2.39 -0.01 2.38 16 32 H 0.04 1.96 5.03 -2.44 -0.01 1.95 16 33 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.09 1.21 8.10 -2.38 -0.02 1.19 16 36 H 0.08 1.07 8.10 -2.39 -0.02 1.05 16 37 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.07 0.88 6.49 -2.39 -0.02 0.87 16 39 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.40 7.99 8.80 -92.71 -0.82 7.18 16 42 H 0.08 2.03 6.68 -2.38 -0.02 2.01 16 43 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 44 H 0.00 -0.16 6.23 -2.39 -0.01 -0.18 16 45 H 0.06 2.67 6.43 -2.39 -0.02 2.65 16 Total: -1.00 -78.36 323.34 1.04 -77.31 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.38 Total: 16.64 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: 4.10 Total: -19.05 kcal Atomic # 7 Polarization: -98.81 SS G_CDS: -5.45 Total: -104.25 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.04 Total: -24.92 kcal Atomic # 14 Polarization: 52.22 SS G_CDS: 2.05 Total: 54.27 kcal Total: -78.36 1.04 -77.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174560.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.779 kcal (2) G-P(sol) polarization free energy of solvation -78.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds