Wall clock time and date at job start Tue Mar 31 2020 01:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 120.00109 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99874 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47112 * 59.99775 * 9 7 5 11 11 H 1.48497 * 109.47325 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47038 * 300.00131 * 9 7 5 13 13 N 1.46895 * 109.46799 * 294.99463 * 3 2 1 14 14 C 1.46846 * 111.00692 * 299.21360 * 13 3 2 15 15 C 1.53029 * 109.52748 * 174.16185 * 14 13 3 16 16 C 1.53119 * 109.28004 * 59.17473 * 15 14 13 17 17 N 1.46499 * 109.52304 * 182.43987 * 16 15 14 18 18 C 1.46764 * 124.35231 * 239.41226 * 17 16 15 19 19 C 1.54662 * 105.38572 * 162.85586 * 18 17 16 20 20 C 1.54629 * 101.68134 * 25.76520 * 19 18 17 21 21 C 1.34428 * 124.34803 * 59.71162 * 17 16 15 22 22 O 1.21279 * 124.93895 * 0.42480 * 21 17 16 23 23 C 1.53115 * 109.16476 * 302.34574 * 16 15 14 24 24 C 1.46848 * 111.00134 * 174.99991 * 13 3 2 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 0.96997 * 119.99669 * 180.02562 * 8 7 5 31 31 H 1.09005 * 109.45481 * 294.17657 * 14 13 3 32 32 H 1.08997 * 109.45845 * 54.14046 * 14 13 3 33 33 H 1.09008 * 109.50510 * 299.23635 * 15 14 13 34 34 H 1.09003 * 109.50496 * 179.11950 * 15 14 13 35 35 H 1.08997 * 109.52311 * 62.25510 * 16 15 14 36 36 H 1.09004 * 110.24519 * 281.98189 * 18 17 16 37 37 H 1.08993 * 110.24673 * 43.98053 * 18 17 16 38 38 H 1.08995 * 111.19064 * 267.59508 * 19 18 17 39 39 H 1.08999 * 110.81969 * 143.77467 * 19 18 17 40 40 H 1.09006 * 110.48835 * 216.30841 * 20 19 18 41 41 H 1.09001 * 110.60416 * 93.72681 * 20 19 18 42 42 H 1.08999 * 109.50501 * 297.72029 * 23 16 15 43 43 H 1.08993 * 109.50841 * 177.59543 * 23 16 15 44 44 H 1.09004 * 109.46321 * 305.85762 * 24 13 3 45 45 H 1.08997 * 109.46421 * 65.82472 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0049 0.8813 1.3819 10 1 6.4995 2.2816 1.3821 11 1 6.3978 0.2179 2.6510 12 1 6.5975 0.1473 0.2350 13 7 1.6515 2.0992 -1.2553 14 6 2.2355 1.4097 -2.4128 15 6 1.6949 2.0291 -3.7035 16 6 2.0526 3.5175 -3.7384 17 7 1.4874 4.1286 -4.9440 18 6 2.2798 4.7963 -5.9834 19 6 1.3517 4.8779 -7.2179 20 6 -0.0474 4.8550 -6.5598 21 6 0.1758 4.1549 -5.2375 22 8 -0.7008 3.6859 -4.5430 23 6 1.4735 4.2029 -2.4978 24 6 2.0207 3.5204 -1.2420 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0610 2.9499 31 1 3.3204 1.5126 -2.3872 32 1 1.9701 0.3531 -2.3779 33 1 0.6114 1.9144 -3.7362 34 1 2.1406 1.5274 -4.5624 35 1 3.1366 3.6316 -3.7451 36 1 2.5653 5.7960 -5.6561 37 1 3.1667 4.2078 -6.2179 38 1 1.4893 4.0168 -7.8718 39 1 1.5117 5.8087 -7.7621 40 1 -0.7495 4.2927 -7.1755 41 1 -0.4116 5.8695 -6.3976 42 1 0.3866 4.1223 -2.5114 43 1 1.7611 5.2542 -2.4952 44 1 1.5992 3.9969 -0.3568 45 1 3.1065 3.6134 -1.2219 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255175101.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:24 Heat of formation + Delta-G solvation = -36.469783 kcal Electronic energy + Delta-G solvation = -23443.769769 eV Core-core repulsion = 20267.665683 eV Total energy + Delta-G solvation = -3176.104085 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.51030 -38.15867 -36.26011 -34.83603 -32.41962 -31.32324 -30.18692 -29.37088 -27.59747 -26.32590 -23.84742 -22.71808 -22.18329 -22.03432 -20.12259 -18.99780 -18.58035 -16.69551 -16.58745 -16.22287 -15.24736 -15.00889 -14.28179 -14.00373 -13.79368 -13.68097 -13.60156 -13.29759 -13.04634 -12.87253 -12.67064 -12.57908 -11.99749 -11.67304 -11.60584 -11.41294 -11.20836 -11.11925 -10.98537 -10.71144 -10.64414 -10.45345 -10.37824 -10.23707 -9.73431 -9.60659 -9.39885 -9.28425 -9.02926 -8.49386 -8.32389 -7.03611 -5.95429 -4.09638 2.72085 3.07813 3.27623 3.33435 3.35102 4.28122 4.31696 4.40395 4.62000 4.89205 5.04057 5.20198 5.25359 5.28608 5.32477 5.42364 5.49045 5.52105 5.62944 5.76688 5.89584 5.97801 6.12060 6.16799 6.31681 6.34752 6.43052 6.54806 6.61193 6.66156 6.75646 6.83312 6.84658 7.00291 7.19185 7.27167 7.31140 7.40926 7.66284 7.80819 8.04078 8.20912 8.33249 8.39004 8.53072 9.00910 9.57564 11.02957 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024865 B = 0.004709 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.823133 B = 5945.155080 C = 6630.893906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.112 4.112 3 C 0.214 3.786 4 H 0.039 0.961 5 C -0.542 4.542 6 H 0.054 0.946 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.532 5.532 14 C 0.066 3.934 15 C -0.128 4.128 16 C 0.161 3.839 17 N -0.616 5.616 18 C 0.100 3.900 19 C -0.131 4.131 20 C -0.157 4.157 21 C 0.512 3.488 22 O -0.521 6.521 23 C -0.127 4.127 24 C 0.070 3.930 25 H 0.024 0.976 26 H 0.049 0.951 27 H 0.038 0.962 28 H 0.092 0.908 29 H 0.033 0.967 30 H 0.261 0.739 31 H 0.035 0.965 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.081 0.919 43 H 0.053 0.947 44 H 0.066 0.934 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.023 8.541 -16.768 18.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.150 4.150 3 C 0.108 3.892 4 H 0.056 0.944 5 C -0.581 4.581 6 H 0.072 0.928 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.256 5.256 14 C -0.063 4.063 15 C -0.167 4.167 16 C 0.059 3.941 17 N -0.350 5.350 18 C -0.023 4.023 19 C -0.169 4.169 20 C -0.198 4.198 21 C 0.299 3.701 22 O -0.397 6.397 23 C -0.166 4.166 24 C -0.059 4.059 25 H 0.043 0.957 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.110 0.890 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.099 0.901 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.952 8.131 -16.180 18.347 hybrid contribution 2.177 0.097 0.185 2.187 sum -0.774 8.228 -15.995 18.004 Atomic orbital electron populations 1.21713 0.98781 0.98369 1.00747 1.21627 0.92335 0.99187 1.01876 1.19270 0.92904 0.91183 0.85846 0.94356 1.21702 0.92909 1.38121 1.05412 0.92758 1.24905 0.97661 0.95086 0.95719 1.69867 1.34803 1.38234 1.09406 0.86765 0.86389 0.78133 0.77326 1.20442 1.21254 1.20407 1.62373 1.58219 1.00922 1.04086 1.21846 0.96828 0.98515 0.89091 1.22018 1.03244 0.93415 0.97973 1.21121 0.97088 0.93274 0.82575 1.48551 1.07352 1.56782 1.22347 1.22102 0.95043 0.97767 0.87393 1.22608 0.93837 1.03559 0.96888 1.22355 0.98768 1.02797 0.95853 1.20808 0.82510 0.79271 0.87474 1.90746 1.46319 1.47463 1.55179 1.22005 1.02833 0.97774 0.94007 1.21755 0.98052 0.90382 0.95729 0.95682 0.93222 0.94236 0.89007 0.94866 0.92867 0.94725 0.90763 0.90105 0.92840 0.90168 0.91304 0.90551 0.90089 0.89480 0.88414 0.88190 0.90051 0.92795 0.91535 0.94719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.80 37.16 0.36 -2.61 16 2 C -0.11 -2.70 5.06 -26.73 -0.14 -2.84 16 3 C 0.21 5.32 1.75 -68.86 -0.12 5.20 16 4 H 0.04 1.07 8.08 -51.93 -0.42 0.65 16 5 C -0.54 -14.37 7.19 -34.44 -0.25 -14.62 16 6 H 0.05 1.44 5.84 -52.48 -0.31 1.13 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 8 N -0.88 -24.88 11.29 55.43 0.63 -24.25 16 9 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.53 -11.49 4.10 -228.08 -0.93 -12.43 16 14 C 0.07 1.32 4.80 -3.84 -0.02 1.30 16 15 C -0.13 -2.18 5.41 -26.65 -0.14 -2.32 16 16 C 0.16 2.46 2.81 -67.81 -0.19 2.27 16 17 N -0.62 -7.93 2.84 -164.59 -0.47 -8.39 16 18 C 0.10 0.85 7.31 -3.02 -0.02 0.83 16 19 C -0.13 -0.85 7.19 -25.00 -0.18 -1.03 16 20 C -0.16 -1.40 6.86 -26.74 -0.18 -1.59 16 21 C 0.51 7.21 7.40 -10.86 -0.08 7.13 16 22 O -0.52 -9.70 15.05 5.56 0.08 -9.61 16 23 C -0.13 -2.16 5.41 -26.65 -0.14 -2.30 16 24 C 0.07 1.39 5.12 -3.83 -0.02 1.37 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 1.05 7.75 -51.93 -0.40 0.65 16 27 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.09 2.46 5.95 -51.93 -0.31 2.15 16 29 H 0.03 0.78 6.05 -51.93 -0.31 0.47 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.03 0.72 6.62 -51.93 -0.34 0.38 16 32 H 0.07 1.53 5.93 -51.93 -0.31 1.23 16 33 H 0.08 1.56 6.71 -51.92 -0.35 1.21 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 1.16 8.07 -51.93 -0.42 0.74 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 1.56 6.71 -51.93 -0.35 1.21 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.07 1.35 8.08 -51.93 -0.42 0.93 16 45 H 0.03 0.72 6.96 -51.93 -0.36 0.36 16 LS Contribution 338.03 15.07 5.09 5.09 Total: -1.00 -30.16 338.03 -9.50 -39.66 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -7.66 Total: 1.40 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -1.22 Total: -7.44 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: -0.78 Total: -45.07 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.08 Total: -9.61 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.16 -9.50 -39.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175101.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.193 kcal (2) G-P(sol) polarization free energy of solvation -30.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds