Wall clock time and date at job start Tue Mar 31 2020 01:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 120.00109 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99874 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47112 * 59.99775 * 9 7 5 11 11 H 1.48497 * 109.47325 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47038 * 300.00131 * 9 7 5 13 13 N 1.46895 * 109.46799 * 294.99463 * 3 2 1 14 14 C 1.46846 * 111.00692 * 299.21360 * 13 3 2 15 15 C 1.53029 * 109.52748 * 174.16185 * 14 13 3 16 16 C 1.53119 * 109.28004 * 59.17473 * 15 14 13 17 17 N 1.46499 * 109.52304 * 182.43987 * 16 15 14 18 18 C 1.46764 * 124.35231 * 239.41226 * 17 16 15 19 19 C 1.54662 * 105.38572 * 162.85586 * 18 17 16 20 20 C 1.54629 * 101.68134 * 25.76520 * 19 18 17 21 21 C 1.34428 * 124.34803 * 59.71162 * 17 16 15 22 22 O 1.21279 * 124.93895 * 0.42480 * 21 17 16 23 23 C 1.53115 * 109.16476 * 302.34574 * 16 15 14 24 24 C 1.46848 * 111.00134 * 174.99991 * 13 3 2 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 0.96997 * 119.99669 * 180.02562 * 8 7 5 31 31 H 1.09005 * 109.45481 * 294.17657 * 14 13 3 32 32 H 1.08997 * 109.45845 * 54.14046 * 14 13 3 33 33 H 1.09008 * 109.50510 * 299.23635 * 15 14 13 34 34 H 1.09003 * 109.50496 * 179.11950 * 15 14 13 35 35 H 1.08997 * 109.52311 * 62.25510 * 16 15 14 36 36 H 1.09004 * 110.24519 * 281.98189 * 18 17 16 37 37 H 1.08993 * 110.24673 * 43.98053 * 18 17 16 38 38 H 1.08995 * 111.19064 * 267.59508 * 19 18 17 39 39 H 1.08999 * 110.81969 * 143.77467 * 19 18 17 40 40 H 1.09006 * 110.48835 * 216.30841 * 20 19 18 41 41 H 1.09001 * 110.60416 * 93.72681 * 20 19 18 42 42 H 1.08999 * 109.50501 * 297.72029 * 23 16 15 43 43 H 1.08993 * 109.50841 * 177.59543 * 23 16 15 44 44 H 1.09004 * 109.46321 * 305.85762 * 24 13 3 45 45 H 1.08997 * 109.46421 * 65.82472 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0049 0.8813 1.3819 10 1 6.4995 2.2816 1.3821 11 1 6.3978 0.2179 2.6510 12 1 6.5975 0.1473 0.2350 13 7 1.6515 2.0992 -1.2553 14 6 2.2355 1.4097 -2.4128 15 6 1.6949 2.0291 -3.7035 16 6 2.0526 3.5175 -3.7384 17 7 1.4874 4.1286 -4.9440 18 6 2.2798 4.7963 -5.9834 19 6 1.3517 4.8779 -7.2179 20 6 -0.0474 4.8550 -6.5598 21 6 0.1758 4.1549 -5.2375 22 8 -0.7008 3.6859 -4.5430 23 6 1.4735 4.2029 -2.4978 24 6 2.0207 3.5204 -1.2420 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0610 2.9499 31 1 3.3204 1.5126 -2.3872 32 1 1.9701 0.3531 -2.3779 33 1 0.6114 1.9144 -3.7362 34 1 2.1406 1.5274 -4.5624 35 1 3.1366 3.6316 -3.7451 36 1 2.5653 5.7960 -5.6561 37 1 3.1667 4.2078 -6.2179 38 1 1.4893 4.0168 -7.8718 39 1 1.5117 5.8087 -7.7621 40 1 -0.7495 4.2927 -7.1755 41 1 -0.4116 5.8695 -6.3976 42 1 0.3866 4.1223 -2.5114 43 1 1.7611 5.2542 -2.4952 44 1 1.5992 3.9969 -0.3568 45 1 3.1065 3.6134 -1.2219 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255175101.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:23 Heat of formation + Delta-G solvation = -54.972221 kcal Electronic energy + Delta-G solvation = -23444.572094 eV Core-core repulsion = 20267.665683 eV Total energy + Delta-G solvation = -3176.906411 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.56155 -39.74898 -37.35318 -36.38878 -34.11463 -33.01589 -31.70459 -30.73701 -28.36998 -28.20765 -25.51797 -24.35225 -23.79726 -22.73126 -21.61810 -20.76616 -19.84105 -18.28437 -17.74934 -17.37329 -16.98847 -16.16965 -16.06337 -15.58752 -15.13175 -14.93424 -14.76098 -14.59233 -14.56491 -14.30662 -13.86245 -13.72146 -13.49000 -13.25255 -13.12539 -12.91795 -12.78649 -12.51856 -12.36733 -12.18388 -12.09179 -12.06528 -11.92165 -11.71549 -11.58899 -11.39082 -11.08162 -10.97782 -10.52322 -10.41413 -9.56592 -8.88167 -8.00340 -6.24436 1.39563 1.39810 1.47387 1.68888 2.09586 2.41192 3.16852 3.38162 3.50297 3.70017 3.89847 3.92364 4.12229 4.16986 4.30781 4.35352 4.51060 4.57268 4.60082 4.65531 4.71146 4.72898 4.79020 4.84911 4.88616 4.92208 4.95815 5.00519 5.09122 5.13910 5.25339 5.27563 5.29560 5.36305 5.40002 5.49645 5.62503 5.75800 5.79303 6.05207 6.20923 6.32538 6.42002 6.70317 6.96291 7.29511 7.46476 8.94017 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024865 B = 0.004709 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.823133 B = 5945.155080 C = 6630.893906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.106 4.106 3 C 0.220 3.780 4 H 0.000 1.000 5 C -0.549 4.549 6 H 0.053 0.947 7 C 0.021 3.979 8 N -0.913 5.913 9 Si 0.948 3.052 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.537 5.537 14 C 0.072 3.928 15 C -0.115 4.115 16 C 0.164 3.836 17 N -0.617 5.617 18 C 0.092 3.908 19 C -0.116 4.116 20 C -0.149 4.149 21 C 0.496 3.504 22 O -0.579 6.579 23 C -0.113 4.113 24 C 0.072 3.928 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.031 0.969 28 H 0.065 0.935 29 H 0.034 0.966 30 H 0.261 0.739 31 H 0.026 0.974 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.119 0.881 40 H 0.105 0.895 41 H 0.116 0.884 42 H 0.056 0.944 43 H 0.075 0.925 44 H 0.052 0.948 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.672 9.794 -19.598 21.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.145 4.145 3 C 0.113 3.887 4 H 0.018 0.982 5 C -0.589 4.589 6 H 0.071 0.929 7 C -0.179 4.179 8 N -0.552 5.552 9 Si 0.774 3.226 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.197 1.197 13 N -0.261 5.261 14 C -0.057 4.057 15 C -0.153 4.153 16 C 0.061 3.939 17 N -0.349 5.349 18 C -0.030 4.030 19 C -0.154 4.154 20 C -0.189 4.189 21 C 0.285 3.715 22 O -0.459 6.459 23 C -0.152 4.152 24 C -0.057 4.057 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.051 0.949 28 H 0.083 0.917 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.044 0.956 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.115 0.885 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.137 0.863 40 H 0.123 0.877 41 H 0.134 0.866 42 H 0.075 0.925 43 H 0.094 0.906 44 H 0.070 0.930 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -1.576 9.412 -19.058 21.314 hybrid contribution 1.733 -0.271 1.069 2.054 sum 0.156 9.141 -17.989 20.179 Atomic orbital electron populations 1.21566 0.96778 0.99685 1.00320 1.21478 0.94085 0.98398 1.00502 1.19034 0.92113 0.91333 0.86200 0.98192 1.21913 0.93730 1.37820 1.05391 0.92867 1.25641 1.01912 0.94862 0.95477 1.70006 1.36442 1.38908 1.09811 0.85769 0.81240 0.78235 0.77327 1.19915 1.21105 1.19727 1.62308 1.58533 1.01857 1.03426 1.21803 0.96196 0.98013 0.89709 1.21849 1.01510 0.95066 0.96911 1.20898 0.97845 0.91906 0.83214 1.48627 1.07782 1.56322 1.22211 1.22460 0.95349 0.98292 0.86859 1.22652 0.91031 1.05695 0.95995 1.22378 1.00780 1.02874 0.92895 1.21804 0.82204 0.78683 0.88792 1.90714 1.47963 1.49953 1.57300 1.21831 1.01055 0.98824 0.93509 1.21744 0.97521 0.89454 0.96959 0.93462 0.93238 0.94946 0.91679 0.94714 0.92966 0.95573 0.91943 0.92538 0.90695 0.88528 0.89714 0.89227 0.89273 0.86256 0.87703 0.86595 0.92529 0.90650 0.92989 0.95444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.50 9.80 71.98 0.71 -4.80 16 2 C -0.11 -5.28 5.06 30.60 0.15 -5.13 16 3 C 0.22 11.37 1.75 44.17 0.08 11.45 16 4 H 0.00 0.01 8.08 -2.39 -0.02 -0.01 16 5 C -0.55 -29.69 7.19 25.60 0.18 -29.51 16 6 H 0.05 2.83 5.84 -2.91 -0.02 2.82 16 7 C 0.02 1.14 5.29 84.66 0.45 1.59 16 8 N -0.91 -52.56 11.29 21.45 0.24 -52.32 16 9 Si 0.95 43.21 29.54 68.60 2.03 45.23 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 11 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 13 N -0.54 -23.93 4.10 -875.51 -3.59 -27.51 16 14 C 0.07 2.87 4.80 86.32 0.41 3.28 16 15 C -0.11 -3.84 5.41 30.64 0.17 -3.67 16 16 C 0.16 4.78 2.81 45.07 0.13 4.91 16 17 N -0.62 -14.47 2.84 -793.24 -2.25 -16.72 16 18 C 0.09 1.19 7.31 86.90 0.64 1.82 16 19 C -0.12 -0.97 7.19 31.72 0.23 -0.74 16 20 C -0.15 -2.21 6.86 30.59 0.21 -2.00 16 21 C 0.50 13.30 7.40 87.90 0.65 13.95 16 22 O -0.58 -21.89 15.05 -3.02 -0.05 -21.93 16 23 C -0.11 -3.81 5.41 30.65 0.17 -3.65 16 24 C 0.07 2.93 5.12 86.33 0.44 3.37 16 25 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.05 2.14 7.75 -2.39 -0.02 2.12 16 27 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 28 H 0.06 3.61 5.95 -2.39 -0.01 3.59 16 29 H 0.03 1.68 6.05 -2.39 -0.01 1.66 16 30 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 31 H 0.03 1.09 6.62 -2.38 -0.02 1.08 16 32 H 0.06 2.62 5.93 -2.39 -0.01 2.60 16 33 H 0.06 2.21 6.71 -2.38 -0.02 2.19 16 34 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.10 2.54 8.07 -2.39 -0.02 2.52 16 36 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 40 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 41 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.06 2.22 6.71 -2.39 -0.02 2.20 16 43 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.05 2.21 8.08 -2.38 -0.02 2.19 16 45 H 0.03 1.15 6.96 -2.39 -0.02 1.13 16 Total: -1.00 -68.53 338.03 1.95 -66.58 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.96 Total: 15.79 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: 4.61 Total: -9.11 kcal Atomic # 7 Polarization: -90.96 SS G_CDS: -5.59 Total: -96.56 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.05 Total: -21.93 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -68.53 1.95 -66.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175101.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.606 kcal (2) G-P(sol) polarization free energy of solvation -68.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds