Wall clock time and date at job start Tue Mar 31 2020 01:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47210 * 2 1 4 4 H 1.09004 * 109.47064 * 303.16257 * 3 2 1 5 5 C 1.50704 * 109.47002 * 183.16853 * 3 2 1 6 6 H 1.07997 * 119.99823 * 240.27459 * 5 3 2 7 7 C 1.37873 * 120.00217 * 59.99987 * 5 3 2 8 8 N 1.31514 * 120.00025 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00148 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47296 * 89.99967 * 9 7 5 11 11 H 1.48500 * 109.47139 * 210.00217 * 9 7 5 12 12 H 1.48498 * 109.46886 * 329.99795 * 9 7 5 13 13 N 1.46897 * 109.47107 * 63.16484 * 3 2 1 14 14 C 1.46897 * 111.00153 * 191.41024 * 13 3 2 15 15 C 1.53235 * 109.34019 * 172.74699 * 14 13 3 16 16 N 1.47081 * 108.52173 * 53.83581 * 15 14 13 17 17 C 1.34776 * 120.88139 * 128.79318 * 16 15 14 18 18 O 1.21283 * 119.99626 * 180.02562 * 17 16 15 19 19 C 1.50696 * 120.00163 * 0.02562 * 17 16 15 20 20 C 1.53785 * 113.61521 * 277.50092 * 19 17 16 21 21 C 1.53780 * 87.08128 * 220.02004 * 20 19 17 22 22 C 1.53777 * 113.61324 * 180.02562 * 19 17 16 23 23 C 1.47074 * 118.23459 * 308.81555 * 16 15 14 24 24 C 1.46903 * 110.99618 * 67.11226 * 13 3 2 25 25 H 1.08998 * 109.47416 * 64.78358 * 1 2 3 26 26 H 1.09006 * 109.47555 * 184.78332 * 1 2 3 27 27 H 1.09007 * 109.47233 * 304.78646 * 1 2 3 28 28 H 1.09001 * 109.46986 * 239.99988 * 2 1 3 29 29 H 1.08997 * 109.47618 * 120.00267 * 2 1 3 30 30 H 0.97002 * 120.00487 * 180.02562 * 8 7 5 31 31 H 1.08994 * 109.49642 * 292.71505 * 14 13 3 32 32 H 1.09002 * 109.48836 * 52.78819 * 14 13 3 33 33 H 1.08995 * 109.62872 * 294.12197 * 15 14 13 34 34 H 1.09003 * 109.79167 * 173.63968 * 15 14 13 35 35 H 1.08999 * 112.84843 * 48.80561 * 19 17 16 36 36 H 1.09003 * 113.61254 * 334.56389 * 20 19 17 37 37 H 1.08999 * 113.61471 * 105.47298 * 20 19 17 38 38 H 1.09003 * 113.61232 * 270.88331 * 21 20 19 39 39 H 1.09000 * 113.69640 * 139.99310 * 21 20 19 40 40 H 1.09009 * 113.61328 * 254.52415 * 22 19 17 41 41 H 1.08997 * 113.61614 * 25.43243 * 22 19 17 42 42 H 1.09008 * 109.62849 * 291.47244 * 23 16 15 43 43 H 1.08997 * 109.79120 * 170.98786 * 23 16 15 44 44 H 1.08992 * 109.49573 * 307.21361 * 24 13 3 45 45 H 1.09004 * 109.49030 * 67.26774 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6311 1.9725 -0.8603 5 6 3.5449 1.4432 -0.0785 6 1 4.1267 1.8922 0.7129 7 6 4.1792 0.8657 -1.1579 8 7 3.4709 0.3146 -2.1192 9 14 6.0446 0.8671 -1.2556 10 1 6.5754 -0.3574 -0.6046 11 1 6.4658 0.8931 -2.6794 12 1 6.5757 2.0671 -0.5604 13 7 1.6137 2.1126 1.2358 14 6 1.8459 3.5609 1.1564 15 6 1.2263 4.2421 2.3812 16 7 1.7518 3.5936 3.5922 17 6 2.2863 4.3234 4.5913 18 8 2.7153 3.7719 5.5827 19 6 2.3508 5.8246 4.4766 20 6 3.5552 6.3292 3.6644 21 6 3.6864 7.4534 4.7054 22 6 2.9881 6.5088 5.6975 23 6 1.6789 2.1275 3.6838 24 6 2.2806 1.5295 2.4077 25 1 -0.3634 0.4378 -0.9297 26 1 -0.3634 -1.0241 0.0857 27 1 -0.3634 0.5863 0.8441 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.9171 -0.0921 -2.8785 31 1 2.9179 3.7568 1.1346 32 1 1.3856 3.9538 0.2499 33 1 0.1420 4.1357 2.3500 34 1 1.4903 5.2997 2.3883 35 1 1.4019 6.2671 4.1736 36 1 4.3985 5.6385 3.6591 37 1 3.2919 6.6851 2.6683 38 1 3.1032 8.3422 4.4641 39 1 4.7174 7.6837 4.9739 40 1 2.2668 7.0099 6.3432 41 1 3.6764 5.8673 6.2477 42 1 0.6380 1.8178 3.7778 43 1 2.2430 1.7834 4.5507 44 1 2.1356 0.4492 2.4087 45 1 3.3467 1.7533 2.3682 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255175518.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:57 Heat of formation + Delta-G solvation = -12.010041 kcal Electronic energy + Delta-G solvation = -23428.439715 eV Core-core repulsion = 20253.396284 eV Total energy + Delta-G solvation = -3175.043431 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.38759 -38.34208 -37.04667 -35.09879 -32.45954 -31.21252 -30.75875 -27.91226 -26.55235 -25.69873 -25.20747 -23.18847 -22.79951 -21.19171 -19.96670 -19.17542 -18.41756 -17.30313 -16.31004 -15.80344 -15.46319 -15.08285 -14.81264 -14.41816 -14.13664 -13.81540 -13.69066 -13.02854 -12.79735 -12.65011 -12.54436 -12.22416 -12.07019 -11.77441 -11.60839 -11.30605 -11.15162 -10.97772 -10.91074 -10.88682 -10.61937 -10.55889 -10.50867 -10.45392 -9.92369 -9.70251 -9.60962 -9.32730 -9.15380 -8.41757 -8.34599 -7.21407 -6.04393 -4.17635 2.80786 3.23286 3.25098 3.30947 3.33780 4.35449 4.44149 4.52252 4.60822 4.73104 4.87404 4.99664 5.20353 5.37337 5.42941 5.51079 5.58482 5.64965 5.70450 5.77527 5.79535 5.86422 5.92607 5.99477 6.05391 6.11799 6.31684 6.34815 6.39751 6.45555 6.59101 6.64558 6.74019 6.81990 7.07165 7.13203 7.30004 7.53468 7.66321 7.71838 7.90215 8.08405 8.22421 8.39288 8.40581 8.91632 9.50487 10.95126 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018089 B = 0.005321 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.572696 B = 5260.597530 C = 6116.930466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.110 4.110 3 C 0.215 3.785 4 H 0.039 0.961 5 C -0.545 4.545 6 H 0.056 0.944 7 C 0.070 3.930 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.532 5.532 14 C 0.049 3.951 15 C 0.111 3.889 16 N -0.604 5.604 17 C 0.522 3.478 18 O -0.553 6.553 19 C -0.137 4.137 20 C -0.123 4.123 21 C -0.142 4.142 22 C -0.117 4.117 23 C 0.113 3.887 24 C 0.050 3.950 25 H 0.037 0.963 26 H 0.025 0.975 27 H 0.050 0.950 28 H 0.092 0.908 29 H 0.032 0.968 30 H 0.261 0.739 31 H 0.040 0.960 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.093 0.907 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.253 10.503 8.859 14.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.149 4.149 3 C 0.109 3.891 4 H 0.057 0.943 5 C -0.584 4.584 6 H 0.074 0.926 7 C -0.132 4.132 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.257 5.257 14 C -0.080 4.080 15 C -0.012 4.012 16 N -0.336 5.336 17 C 0.310 3.690 18 O -0.432 6.432 19 C -0.159 4.159 20 C -0.160 4.160 21 C -0.179 4.179 22 C -0.155 4.155 23 C -0.009 4.009 24 C -0.079 4.079 25 H 0.056 0.944 26 H 0.044 0.956 27 H 0.069 0.931 28 H 0.110 0.890 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.128 0.872 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.112 0.888 42 H 0.084 0.916 43 H 0.102 0.898 44 H 0.100 0.900 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.523 10.028 9.237 14.365 hybrid contribution 1.881 -0.013 -0.463 1.937 sum -2.643 10.016 8.774 13.575 Atomic orbital electron populations 1.21719 0.98812 0.98562 1.00549 1.21590 0.92238 0.99067 1.01962 1.19281 0.92847 0.91174 0.85817 0.94321 1.21720 0.92658 1.37937 1.06051 0.92636 1.24886 0.97868 0.94953 0.95540 1.69867 1.34954 1.37686 1.09749 0.86697 0.86265 0.78442 0.77218 1.20657 1.21155 1.20131 1.62427 1.56953 1.01586 1.04704 1.22208 0.99158 0.90655 0.96002 1.21957 0.98704 0.96298 0.84228 1.48192 1.59598 1.07624 1.18193 1.20480 0.76910 0.89272 0.82363 1.90639 1.48439 1.73125 1.30974 1.22762 1.00412 0.92207 1.00478 1.22833 0.97076 0.98018 0.98110 1.22827 1.01248 0.96973 0.96880 1.22786 0.99797 0.97485 0.95440 1.21839 1.01281 0.78596 0.99215 1.22281 0.96930 0.99511 0.89224 0.94361 0.95611 0.93121 0.88994 0.94915 0.92853 0.94173 0.90553 0.91221 0.90322 0.87205 0.89649 0.90555 0.90004 0.91126 0.91287 0.88836 0.91587 0.89779 0.89976 0.93962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.85 37.15 0.37 -2.33 16 2 C -0.11 -2.50 5.14 -26.73 -0.14 -2.64 16 3 C 0.21 4.99 1.72 -68.86 -0.12 4.88 16 4 H 0.04 1.00 7.94 -51.93 -0.41 0.59 16 5 C -0.54 -14.02 7.28 -34.44 -0.25 -14.27 16 6 H 0.06 1.47 5.87 -52.49 -0.31 1.16 16 7 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 8 N -0.88 -24.16 11.30 55.43 0.63 -23.53 16 9 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.53 -10.40 3.86 -227.73 -0.88 -11.28 16 14 C 0.05 0.85 5.34 -3.70 -0.02 0.83 16 15 C 0.11 1.54 6.46 -3.60 -0.02 1.51 16 16 N -0.60 -9.43 3.01 -172.47 -0.52 -9.95 16 17 C 0.52 8.22 7.23 -10.99 -0.08 8.14 16 18 O -0.55 -10.53 15.36 5.55 0.09 -10.45 16 19 C -0.14 -1.62 2.73 -90.96 -0.25 -1.86 16 20 C -0.12 -1.34 7.19 -25.92 -0.19 -1.53 16 21 C -0.14 -1.30 8.08 -25.94 -0.21 -1.51 16 22 C -0.12 -1.28 7.40 -25.94 -0.19 -1.47 16 23 C 0.11 1.88 6.59 -3.60 -0.02 1.86 16 24 C 0.05 0.95 4.90 -3.70 -0.02 0.93 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.94 7.56 -51.93 -0.39 0.55 16 28 H 0.09 2.36 5.99 -51.93 -0.31 2.05 16 29 H 0.03 0.73 6.32 -51.93 -0.33 0.41 16 30 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.04 0.78 7.44 -51.93 -0.39 0.39 16 32 H 0.08 1.29 7.97 -51.93 -0.41 0.87 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.08 0.89 5.51 -51.93 -0.29 0.60 16 35 H 0.11 1.07 7.54 -51.93 -0.39 0.68 16 36 H 0.08 1.09 8.09 -51.93 -0.42 0.67 16 37 H 0.08 0.75 7.93 -51.93 -0.41 0.34 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 41 H 0.09 1.19 7.43 -51.93 -0.39 0.81 16 42 H 0.07 1.04 8.14 -51.92 -0.42 0.61 16 43 H 0.08 1.45 7.07 -51.93 -0.37 1.08 16 44 H 0.08 1.60 6.17 -51.93 -0.32 1.28 16 45 H 0.04 0.91 6.38 -51.93 -0.33 0.58 16 LS Contribution 340.13 15.07 5.13 5.13 Total: -1.00 -28.55 340.13 -9.38 -37.93 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -7.56 Total: 2.04 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -1.24 Total: -5.70 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: -0.77 Total: -44.77 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.55 -9.38 -37.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175518.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.918 kcal (2) G-P(sol) polarization free energy of solvation -28.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds