Wall clock time and date at job start Tue Mar 31 2020 01:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47210 * 2 1 4 4 H 1.09004 * 109.47064 * 303.16257 * 3 2 1 5 5 C 1.50704 * 109.47002 * 183.16853 * 3 2 1 6 6 H 1.07997 * 119.99823 * 240.27459 * 5 3 2 7 7 C 1.37873 * 120.00217 * 59.99987 * 5 3 2 8 8 N 1.31514 * 120.00025 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00148 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47296 * 89.99967 * 9 7 5 11 11 H 1.48500 * 109.47139 * 210.00217 * 9 7 5 12 12 H 1.48498 * 109.46886 * 329.99795 * 9 7 5 13 13 N 1.46897 * 109.47107 * 63.16484 * 3 2 1 14 14 C 1.46897 * 111.00153 * 191.41024 * 13 3 2 15 15 C 1.53235 * 109.34019 * 172.74699 * 14 13 3 16 16 N 1.47081 * 108.52173 * 53.83581 * 15 14 13 17 17 C 1.34776 * 120.88139 * 128.79318 * 16 15 14 18 18 O 1.21283 * 119.99626 * 180.02562 * 17 16 15 19 19 C 1.50696 * 120.00163 * 0.02562 * 17 16 15 20 20 C 1.53785 * 113.61521 * 277.50092 * 19 17 16 21 21 C 1.53780 * 87.08128 * 220.02004 * 20 19 17 22 22 C 1.53777 * 113.61324 * 180.02562 * 19 17 16 23 23 C 1.47074 * 118.23459 * 308.81555 * 16 15 14 24 24 C 1.46903 * 110.99618 * 67.11226 * 13 3 2 25 25 H 1.08998 * 109.47416 * 64.78358 * 1 2 3 26 26 H 1.09006 * 109.47555 * 184.78332 * 1 2 3 27 27 H 1.09007 * 109.47233 * 304.78646 * 1 2 3 28 28 H 1.09001 * 109.46986 * 239.99988 * 2 1 3 29 29 H 1.08997 * 109.47618 * 120.00267 * 2 1 3 30 30 H 0.97002 * 120.00487 * 180.02562 * 8 7 5 31 31 H 1.08994 * 109.49642 * 292.71505 * 14 13 3 32 32 H 1.09002 * 109.48836 * 52.78819 * 14 13 3 33 33 H 1.08995 * 109.62872 * 294.12197 * 15 14 13 34 34 H 1.09003 * 109.79167 * 173.63968 * 15 14 13 35 35 H 1.08999 * 112.84843 * 48.80561 * 19 17 16 36 36 H 1.09003 * 113.61254 * 334.56389 * 20 19 17 37 37 H 1.08999 * 113.61471 * 105.47298 * 20 19 17 38 38 H 1.09003 * 113.61232 * 270.88331 * 21 20 19 39 39 H 1.09000 * 113.69640 * 139.99310 * 21 20 19 40 40 H 1.09009 * 113.61328 * 254.52415 * 22 19 17 41 41 H 1.08997 * 113.61614 * 25.43243 * 22 19 17 42 42 H 1.09008 * 109.62849 * 291.47244 * 23 16 15 43 43 H 1.08997 * 109.79120 * 170.98786 * 23 16 15 44 44 H 1.08992 * 109.49573 * 307.21361 * 24 13 3 45 45 H 1.09004 * 109.49030 * 67.26774 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6311 1.9725 -0.8603 5 6 3.5449 1.4432 -0.0785 6 1 4.1267 1.8922 0.7129 7 6 4.1792 0.8657 -1.1579 8 7 3.4709 0.3146 -2.1192 9 14 6.0446 0.8671 -1.2556 10 1 6.5754 -0.3574 -0.6046 11 1 6.4658 0.8931 -2.6794 12 1 6.5757 2.0671 -0.5604 13 7 1.6137 2.1126 1.2358 14 6 1.8459 3.5609 1.1564 15 6 1.2263 4.2421 2.3812 16 7 1.7518 3.5936 3.5922 17 6 2.2863 4.3234 4.5913 18 8 2.7153 3.7719 5.5827 19 6 2.3508 5.8246 4.4766 20 6 3.5552 6.3292 3.6644 21 6 3.6864 7.4534 4.7054 22 6 2.9881 6.5088 5.6975 23 6 1.6789 2.1275 3.6838 24 6 2.2806 1.5295 2.4077 25 1 -0.3634 0.4378 -0.9297 26 1 -0.3634 -1.0241 0.0857 27 1 -0.3634 0.5863 0.8441 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.9171 -0.0921 -2.8785 31 1 2.9179 3.7568 1.1346 32 1 1.3856 3.9538 0.2499 33 1 0.1420 4.1357 2.3500 34 1 1.4903 5.2997 2.3883 35 1 1.4019 6.2671 4.1736 36 1 4.3985 5.6385 3.6591 37 1 3.2919 6.6851 2.6683 38 1 3.1032 8.3422 4.4641 39 1 4.7174 7.6837 4.9739 40 1 2.2668 7.0099 6.3432 41 1 3.6764 5.8673 6.2477 42 1 0.6380 1.8178 3.7778 43 1 2.2430 1.7834 4.5507 44 1 2.1356 0.4492 2.4087 45 1 3.3467 1.7533 2.3682 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255175518.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:56 Heat of formation + Delta-G solvation = -28.485869 kcal Electronic energy + Delta-G solvation = -23429.154161 eV Core-core repulsion = 20253.396284 eV Total energy + Delta-G solvation = -3175.757877 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.56334 -39.70509 -38.24386 -36.65228 -34.29708 -32.92171 -32.15511 -29.42575 -27.90997 -26.72358 -26.55116 -24.73300 -24.36284 -22.55617 -21.27119 -20.66591 -19.63739 -18.57659 -18.10610 -17.09472 -16.89060 -16.43608 -16.15543 -15.98643 -15.51518 -15.30247 -15.15954 -14.69762 -14.19538 -13.86426 -13.64006 -13.52851 -13.41836 -13.25641 -13.03559 -12.88385 -12.76781 -12.65792 -12.36966 -12.27935 -12.14870 -12.01802 -11.70010 -11.53757 -11.43955 -11.30385 -11.25710 -11.01386 -10.61990 -10.43831 -9.69425 -8.94798 -8.05818 -6.27047 1.32568 1.36184 1.43132 1.59606 2.04096 2.37133 3.13206 3.34454 3.49655 3.61281 3.72068 3.92364 3.99988 4.12464 4.21628 4.32336 4.38242 4.55078 4.61112 4.65815 4.72096 4.78839 4.79138 4.81067 4.86051 4.90390 4.97511 5.03418 5.07344 5.09546 5.19053 5.22170 5.24938 5.45671 5.46476 5.51731 5.57971 5.63256 5.80029 6.03473 6.15774 6.34020 6.49533 6.61663 6.93181 7.16830 7.43629 8.89179 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018089 B = 0.005321 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.572696 B = 5260.597530 C = 6116.930466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.106 4.106 3 C 0.222 3.778 4 H 0.013 0.987 5 C -0.550 4.550 6 H 0.042 0.958 7 C 0.028 3.972 8 N -0.906 5.906 9 Si 0.938 3.062 10 H -0.280 1.280 11 H -0.280 1.280 12 H -0.278 1.278 13 N -0.523 5.523 14 C 0.047 3.953 15 C 0.121 3.879 16 N -0.608 5.608 17 C 0.514 3.486 18 O -0.593 6.593 19 C -0.135 4.135 20 C -0.127 4.127 21 C -0.126 4.126 22 C -0.121 4.121 23 C 0.122 3.878 24 C 0.059 3.941 25 H 0.034 0.966 26 H 0.043 0.957 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.027 0.973 30 H 0.262 0.738 31 H 0.013 0.987 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.112 0.888 35 H 0.143 0.857 36 H 0.057 0.943 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.065 0.935 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.479 12.523 9.402 16.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.144 4.144 3 C 0.115 3.885 4 H 0.031 0.969 5 C -0.589 4.589 6 H 0.060 0.940 7 C -0.173 4.173 8 N -0.545 5.545 9 Si 0.765 3.235 10 H -0.206 1.206 11 H -0.205 1.205 12 H -0.203 1.203 13 N -0.247 5.247 14 C -0.082 4.082 15 C -0.001 4.001 16 N -0.340 5.340 17 C 0.305 3.695 18 O -0.474 6.474 19 C -0.155 4.155 20 C -0.165 4.165 21 C -0.163 4.163 22 C -0.159 4.159 23 C -0.001 4.001 24 C -0.070 4.070 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.032 0.968 32 H 0.101 0.899 33 H 0.108 0.892 34 H 0.130 0.870 35 H 0.160 0.840 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.128 0.872 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.084 0.916 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -5.756 12.066 9.775 16.561 hybrid contribution 2.288 -0.654 -0.623 2.460 sum -3.468 11.412 9.152 15.034 Atomic orbital electron populations 1.21569 0.95958 0.99949 1.00827 1.21436 0.94728 0.98144 1.00141 1.19052 0.91267 0.91639 0.86589 0.96913 1.21929 0.94198 1.37335 1.05478 0.93964 1.25488 1.01247 0.95005 0.95525 1.69973 1.36119 1.38335 1.10108 0.85876 0.82281 0.78110 0.77247 1.20630 1.20546 1.20288 1.62394 1.56226 1.02824 1.03284 1.22306 0.98012 0.89393 0.98476 1.22025 0.99352 0.97340 0.81396 1.48329 1.59587 1.07148 1.18905 1.21284 0.75647 0.91033 0.81558 1.90620 1.49933 1.74277 1.32612 1.22953 1.02162 0.89008 1.01404 1.22842 0.95792 0.98310 0.99544 1.22813 1.01771 0.96901 0.94789 1.22778 0.99891 0.97599 0.95646 1.21642 1.01745 0.79679 0.97054 1.22170 0.95140 0.99374 0.90338 0.94632 0.93814 0.92020 0.92082 0.95383 0.92884 0.96837 0.89915 0.89183 0.86997 0.83966 0.92457 0.88915 0.87233 0.90877 0.89511 0.91590 0.89844 0.90715 0.90714 0.97233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.73 9.85 71.98 0.71 -4.03 16 2 C -0.11 -4.86 5.14 30.59 0.16 -4.70 16 3 C 0.22 10.48 1.72 44.17 0.08 10.56 16 4 H 0.01 0.68 7.94 -2.38 -0.02 0.66 16 5 C -0.55 -29.07 7.28 25.60 0.19 -28.89 16 6 H 0.04 2.31 5.87 -2.91 -0.02 2.29 16 7 C 0.03 1.49 5.30 84.65 0.45 1.94 16 8 N -0.91 -50.45 11.30 21.45 0.24 -50.21 16 9 Si 0.94 43.47 29.54 68.60 2.03 45.49 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 13 N -0.52 -20.35 3.86 -874.41 -3.37 -23.73 16 14 C 0.05 1.60 5.34 86.38 0.46 2.06 16 15 C 0.12 3.00 6.46 86.35 0.56 3.56 16 16 N -0.61 -18.10 3.01 -817.96 -2.46 -20.56 16 17 C 0.51 15.61 7.23 87.66 0.63 16.25 16 18 O -0.59 -22.70 15.36 -3.04 -0.05 -22.74 16 19 C -0.13 -2.80 2.73 -11.01 -0.03 -2.83 16 20 C -0.13 -2.51 7.19 31.12 0.22 -2.28 16 21 C -0.13 -1.91 8.08 31.11 0.25 -1.66 16 22 C -0.12 -2.38 7.40 31.11 0.23 -2.15 16 23 C 0.12 3.98 6.59 86.35 0.57 4.55 16 24 C 0.06 2.28 4.90 86.38 0.42 2.70 16 25 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 27 H 0.06 2.17 7.56 -2.38 -0.02 2.16 16 28 H 0.06 3.20 5.99 -2.39 -0.01 3.18 16 29 H 0.03 1.27 6.32 -2.39 -0.02 1.26 16 30 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 31 H 0.01 0.52 7.44 -2.39 -0.02 0.51 16 32 H 0.08 2.69 7.97 -2.39 -0.02 2.67 16 33 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.11 2.07 5.51 -2.39 -0.01 2.05 16 35 H 0.14 2.08 7.54 -2.39 -0.02 2.06 16 36 H 0.06 1.45 8.09 -2.39 -0.02 1.44 16 37 H 0.09 1.52 7.93 -2.39 -0.02 1.50 16 38 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 41 H 0.07 1.67 7.43 -2.39 -0.02 1.65 16 42 H 0.08 2.46 8.14 -2.38 -0.02 2.45 16 43 H 0.07 2.60 7.07 -2.39 -0.02 2.58 16 44 H 0.07 2.96 6.17 -2.39 -0.01 2.95 16 45 H 0.01 0.42 6.38 -2.38 -0.02 0.41 16 Total: -1.00 -63.87 340.13 2.24 -61.63 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.96 Total: 15.04 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 4.90 Total: -4.91 kcal Atomic # 7 Polarization: -88.91 SS G_CDS: -5.59 Total: -94.50 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.05 Total: -22.74 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -63.87 2.24 -61.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175518.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.142 kcal (2) G-P(sol) polarization free energy of solvation -63.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds