Wall clock time and date at job start Tue Mar 31 2020 01:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47016 * 2 1 4 4 H 1.08997 * 109.46990 * 304.99481 * 3 2 1 5 5 C 1.50707 * 109.46842 * 185.00247 * 3 2 1 6 6 H 1.07998 * 119.99225 * 239.99985 * 5 3 2 7 7 C 1.37873 * 120.00376 * 59.99915 * 5 3 2 8 8 N 1.31515 * 119.99844 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00190 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47095 * 90.00080 * 9 7 5 11 11 H 1.48499 * 109.47383 * 209.99962 * 9 7 5 12 12 H 1.48504 * 109.47167 * 330.00363 * 9 7 5 13 13 N 1.46895 * 109.47410 * 65.00122 * 3 2 1 14 14 C 1.46847 * 110.99982 * 66.04209 * 13 3 2 15 15 C 1.53034 * 109.51345 * 185.84805 * 14 13 3 16 16 C 1.53123 * 109.27992 * 300.80438 * 15 14 13 17 17 C 1.53127 * 109.15019 * 57.67185 * 16 15 14 18 18 H 1.08999 * 109.50124 * 62.28085 * 17 16 15 19 19 N 1.46494 * 109.53459 * 182.38102 * 17 16 15 20 20 C 1.34781 * 120.00056 * 274.82255 * 19 17 16 21 21 O 1.21279 * 119.99760 * 0.02562 * 20 19 17 22 22 C 1.50696 * 120.00124 * 180.02562 * 20 19 17 23 23 C 1.52998 * 117.49967 * 248.74673 * 22 20 19 24 24 C 1.53000 * 117.49947 * 180.08424 * 22 20 19 25 25 C 1.46843 * 110.99970 * 190.25574 * 13 3 2 26 26 H 1.09001 * 109.47289 * 300.00179 * 1 2 3 27 27 H 1.09004 * 109.47212 * 60.00422 * 1 2 3 28 28 H 1.09007 * 109.47338 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47289 * 239.99820 * 2 1 3 30 30 H 1.09000 * 109.47156 * 120.00327 * 2 1 3 31 31 H 0.96999 * 120.00380 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.46481 * 305.85957 * 14 13 3 33 33 H 1.08994 * 109.46283 * 65.83811 * 14 13 3 34 34 H 1.08997 * 109.50952 * 60.75924 * 15 14 13 35 35 H 1.08998 * 109.50459 * 180.87821 * 15 14 13 36 36 H 1.09003 * 109.53012 * 297.76758 * 16 15 14 37 37 H 1.08998 * 109.52498 * 177.57076 * 16 15 14 38 38 H 0.97003 * 120.00433 * 94.82062 * 19 17 16 39 39 H 1.09004 * 115.54983 * 34.41636 * 22 20 19 40 40 H 1.08998 * 117.49790 * 0.02562 * 23 22 20 41 41 H 1.08998 * 117.50066 * 145.02111 * 23 22 20 42 42 H 1.09000 * 117.49999 * 214.98139 * 24 22 20 43 43 H 1.08996 * 117.49725 * 359.97438 * 24 22 20 44 44 H 1.08993 * 109.46313 * 294.17341 * 25 13 3 45 45 H 1.09004 * 109.46429 * 54.14692 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1471 1.8888 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3365 -2.1729 9 14 6.0049 0.8812 -1.3819 10 1 6.5548 -0.3503 -0.7602 11 1 6.3829 0.9223 -2.8173 12 1 6.5569 2.0737 -0.6902 13 7 1.6514 2.0993 1.2552 14 6 2.3338 1.4874 2.4025 15 6 1.7978 2.0961 3.7002 16 6 2.0385 3.6082 3.6866 17 6 1.3581 4.2142 2.4559 18 1 0.2824 4.0497 2.5169 19 7 1.6309 5.6526 2.4038 20 6 0.8526 6.5114 3.0917 21 8 -0.0733 6.0934 3.7541 22 6 1.1328 7.9911 3.0376 23 6 1.6486 8.6595 4.3136 24 6 0.2147 8.9138 3.8417 25 6 1.9067 3.5440 1.1941 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8292 -0.0619 -2.9495 32 1 2.1513 0.4128 2.4028 33 1 3.4052 1.6737 2.3294 34 1 0.7289 1.8984 3.7807 35 1 2.3154 1.6531 4.5510 36 1 3.1096 3.8063 3.6452 37 1 1.6197 4.0519 4.5898 38 1 2.3717 5.9869 1.8743 39 1 1.5120 8.3633 2.0859 40 1 1.7856 8.0289 5.1920 41 1 2.3668 9.4717 4.2013 42 1 -0.0098 9.8932 3.4192 43 1 -0.5922 8.4506 4.4095 44 1 2.9801 3.7206 1.1265 45 1 1.4139 3.9632 0.3168 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255176701.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:31 Heat of formation + Delta-G solvation = -21.222694 kcal Electronic energy + Delta-G solvation = -22925.444058 eV Core-core repulsion = 19750.001137 eV Total energy + Delta-G solvation = -3175.442922 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.04713 -38.44249 -36.31111 -35.12127 -33.41208 -31.79846 -30.72169 -29.18664 -26.55803 -24.69323 -23.85288 -22.62989 -22.20262 -22.03840 -20.09347 -19.66863 -18.88044 -17.43584 -16.35284 -16.00890 -15.29025 -15.20322 -14.53656 -14.42099 -14.20121 -13.87359 -13.39534 -13.25891 -12.91642 -12.70149 -12.62493 -12.11832 -11.95125 -11.74732 -11.39505 -11.21461 -10.95480 -10.85343 -10.80208 -10.77593 -10.65838 -10.47492 -10.38178 -10.10761 -9.89473 -9.78377 -9.64843 -9.33140 -9.13196 -8.78687 -8.39722 -7.16869 -6.02603 -4.16443 2.54647 3.20345 3.22861 3.30685 3.32219 3.73073 4.35361 4.57325 4.66174 4.71402 5.00018 5.02144 5.21039 5.27028 5.38134 5.40603 5.48173 5.58483 5.70789 5.76801 5.91752 5.94232 6.04225 6.21903 6.28257 6.34476 6.39383 6.47961 6.49955 6.51842 6.67057 6.73901 6.76430 6.88934 7.12168 7.18203 7.34098 7.57704 7.64687 7.74025 7.94628 8.11469 8.26548 8.35043 8.44385 8.93481 9.51327 10.96505 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019902 B = 0.004395 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.537962 B = 6368.668258 C = 6987.627432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.110 4.110 3 C 0.216 3.784 4 H 0.038 0.962 5 C -0.545 4.545 6 H 0.056 0.944 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.529 5.529 14 C 0.059 3.941 15 C -0.115 4.115 16 C -0.123 4.123 17 C 0.146 3.854 18 H 0.091 0.909 19 N -0.718 5.718 20 C 0.542 3.458 21 O -0.544 6.544 22 C -0.194 4.194 23 C -0.154 4.154 24 C -0.149 4.149 25 C 0.061 3.939 26 H 0.048 0.952 27 H 0.038 0.962 28 H 0.025 0.975 29 H 0.092 0.908 30 H 0.033 0.967 31 H 0.261 0.739 32 H 0.072 0.928 33 H 0.038 0.962 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.399 0.601 39 H 0.123 0.877 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.107 0.893 44 H 0.039 0.961 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.172 11.722 9.163 15.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.149 4.149 3 C 0.109 3.891 4 H 0.056 0.944 5 C -0.584 4.584 6 H 0.075 0.925 7 C -0.133 4.133 8 N -0.522 5.522 9 Si 0.714 3.286 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.253 5.253 14 C -0.069 4.069 15 C -0.153 4.153 16 C -0.162 4.162 17 C 0.041 3.959 18 H 0.109 0.891 19 N -0.368 5.368 20 C 0.328 3.672 21 O -0.422 6.422 22 C -0.215 4.215 23 C -0.192 4.192 24 C -0.186 4.186 25 C -0.068 4.068 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.044 0.956 29 H 0.110 0.890 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.233 0.767 39 H 0.141 0.859 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.126 0.874 44 H 0.057 0.943 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.338 11.231 9.493 15.080 hybrid contribution 2.478 0.222 -0.703 2.585 sum -0.860 11.453 8.790 14.463 Atomic orbital electron populations 1.21714 0.98806 0.98460 1.00623 1.21596 0.92298 0.99011 1.01954 1.19279 0.93087 0.91276 0.85417 0.94409 1.21733 0.92814 1.38331 1.05480 0.92545 1.24900 0.97751 0.95027 0.95662 1.69872 1.34783 1.38130 1.09438 0.86692 0.86255 0.78371 0.77231 1.20679 1.21206 1.20147 1.62308 1.57171 1.00599 1.05256 1.21959 0.96618 0.99011 0.89314 1.21600 1.01642 0.94163 0.97931 1.21893 1.00090 0.96481 0.97749 1.21107 1.01330 0.77668 0.95774 0.89089 1.46023 1.33158 1.07494 1.50093 1.19594 0.81733 0.86925 0.78966 1.90683 1.30526 1.79202 1.41757 1.22235 1.08750 0.92073 0.98477 1.22926 0.97791 1.02335 0.96114 1.22940 0.94169 0.99391 1.02134 1.21997 0.98878 0.90845 0.95106 0.93289 0.94273 0.95598 0.88958 0.94827 0.92861 0.90935 0.94337 0.91641 0.92304 0.92464 0.92416 0.76685 0.85929 0.88331 0.87926 0.88072 0.87441 0.94262 0.91407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.80 37.16 0.36 -2.44 16 2 C -0.11 -2.55 5.17 -26.73 -0.14 -2.69 16 3 C 0.22 5.10 1.70 -68.87 -0.12 4.99 16 4 H 0.04 1.00 7.98 -51.93 -0.41 0.59 16 5 C -0.54 -13.94 7.23 -34.44 -0.25 -14.19 16 6 H 0.06 1.45 5.84 -52.49 -0.31 1.14 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.20 11.29 55.43 0.63 -23.57 16 9 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 N -0.53 -10.68 4.06 -228.09 -0.92 -11.61 16 14 C 0.06 1.12 4.78 -3.84 -0.02 1.10 16 15 C -0.11 -1.82 6.09 -26.65 -0.16 -1.98 16 16 C -0.12 -1.90 5.58 -26.60 -0.15 -2.05 16 17 C 0.15 2.33 2.62 -67.85 -0.18 2.15 16 18 H 0.09 1.66 7.58 -51.93 -0.39 1.26 16 19 N -0.72 -9.69 5.08 -53.73 -0.27 -9.96 16 20 C 0.54 7.60 7.58 -10.99 -0.08 7.52 16 21 O -0.54 -9.67 15.92 5.56 0.09 -9.58 16 22 C -0.19 -1.98 6.19 -91.77 -0.57 -2.55 16 23 C -0.15 -1.33 10.24 -26.69 -0.27 -1.60 16 24 C -0.15 -1.38 10.05 -26.69 -0.27 -1.65 16 25 C 0.06 1.11 4.66 -3.83 -0.02 1.10 16 26 H 0.05 0.96 7.75 -51.93 -0.40 0.56 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 29 H 0.09 2.40 5.95 -51.93 -0.31 2.09 16 30 H 0.03 0.76 6.23 -51.93 -0.32 0.44 16 31 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.07 1.42 6.13 -51.93 -0.32 1.10 16 33 H 0.04 0.79 6.36 -51.93 -0.33 0.46 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.40 4.48 8.60 -40.82 -0.35 4.13 16 39 H 0.12 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.11 1.17 7.67 -51.93 -0.40 0.77 16 44 H 0.04 0.75 7.31 -51.93 -0.38 0.37 16 45 H 0.07 1.26 8.01 -51.93 -0.42 0.85 16 LS Contribution 349.35 15.07 5.26 5.26 Total: -1.00 -28.62 349.35 -9.90 -38.52 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -7.71 Total: 6.00 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -1.95 Total: -10.56 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: -0.57 Total: -45.14 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.62 -9.90 -38.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176701.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.295 kcal (2) G-P(sol) polarization free energy of solvation -28.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds