Wall clock time and date at job start Tue Mar 31 2020 01:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47016 * 2 1 4 4 H 1.08997 * 109.46990 * 304.99481 * 3 2 1 5 5 C 1.50707 * 109.46842 * 185.00247 * 3 2 1 6 6 H 1.07998 * 119.99225 * 239.99985 * 5 3 2 7 7 C 1.37873 * 120.00376 * 59.99915 * 5 3 2 8 8 N 1.31515 * 119.99844 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00190 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47095 * 90.00080 * 9 7 5 11 11 H 1.48499 * 109.47383 * 209.99962 * 9 7 5 12 12 H 1.48504 * 109.47167 * 330.00363 * 9 7 5 13 13 N 1.46895 * 109.47410 * 65.00122 * 3 2 1 14 14 C 1.46847 * 110.99982 * 66.04209 * 13 3 2 15 15 C 1.53034 * 109.51345 * 185.84805 * 14 13 3 16 16 C 1.53123 * 109.27992 * 300.80438 * 15 14 13 17 17 C 1.53127 * 109.15019 * 57.67185 * 16 15 14 18 18 H 1.08999 * 109.50124 * 62.28085 * 17 16 15 19 19 N 1.46494 * 109.53459 * 182.38102 * 17 16 15 20 20 C 1.34781 * 120.00056 * 274.82255 * 19 17 16 21 21 O 1.21279 * 119.99760 * 0.02562 * 20 19 17 22 22 C 1.50696 * 120.00124 * 180.02562 * 20 19 17 23 23 C 1.52998 * 117.49967 * 248.74673 * 22 20 19 24 24 C 1.53000 * 117.49947 * 180.08424 * 22 20 19 25 25 C 1.46843 * 110.99970 * 190.25574 * 13 3 2 26 26 H 1.09001 * 109.47289 * 300.00179 * 1 2 3 27 27 H 1.09004 * 109.47212 * 60.00422 * 1 2 3 28 28 H 1.09007 * 109.47338 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47289 * 239.99820 * 2 1 3 30 30 H 1.09000 * 109.47156 * 120.00327 * 2 1 3 31 31 H 0.96999 * 120.00380 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.46481 * 305.85957 * 14 13 3 33 33 H 1.08994 * 109.46283 * 65.83811 * 14 13 3 34 34 H 1.08997 * 109.50952 * 60.75924 * 15 14 13 35 35 H 1.08998 * 109.50459 * 180.87821 * 15 14 13 36 36 H 1.09003 * 109.53012 * 297.76758 * 16 15 14 37 37 H 1.08998 * 109.52498 * 177.57076 * 16 15 14 38 38 H 0.97003 * 120.00433 * 94.82062 * 19 17 16 39 39 H 1.09004 * 115.54983 * 34.41636 * 22 20 19 40 40 H 1.08998 * 117.49790 * 0.02562 * 23 22 20 41 41 H 1.08998 * 117.50066 * 145.02111 * 23 22 20 42 42 H 1.09000 * 117.49999 * 214.98139 * 24 22 20 43 43 H 1.08996 * 117.49725 * 359.97438 * 24 22 20 44 44 H 1.08993 * 109.46313 * 294.17341 * 25 13 3 45 45 H 1.09004 * 109.46429 * 54.14692 * 25 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1471 1.8888 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3365 -2.1729 9 14 6.0049 0.8812 -1.3819 10 1 6.5548 -0.3503 -0.7602 11 1 6.3829 0.9223 -2.8173 12 1 6.5569 2.0737 -0.6902 13 7 1.6514 2.0993 1.2552 14 6 2.3338 1.4874 2.4025 15 6 1.7978 2.0961 3.7002 16 6 2.0385 3.6082 3.6866 17 6 1.3581 4.2142 2.4559 18 1 0.2824 4.0497 2.5169 19 7 1.6309 5.6526 2.4038 20 6 0.8526 6.5114 3.0917 21 8 -0.0733 6.0934 3.7541 22 6 1.1328 7.9911 3.0376 23 6 1.6486 8.6595 4.3136 24 6 0.2147 8.9138 3.8417 25 6 1.9067 3.5440 1.1941 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8292 -0.0619 -2.9495 32 1 2.1513 0.4128 2.4028 33 1 3.4052 1.6737 2.3294 34 1 0.7289 1.8984 3.7807 35 1 2.3154 1.6531 4.5510 36 1 3.1096 3.8063 3.6452 37 1 1.6197 4.0519 4.5898 38 1 2.3717 5.9869 1.8743 39 1 1.5120 8.3633 2.0859 40 1 1.7856 8.0289 5.1920 41 1 2.3668 9.4717 4.2013 42 1 -0.0098 9.8932 3.4192 43 1 -0.5922 8.4506 4.4095 44 1 2.9801 3.7206 1.1265 45 1 1.4139 3.9632 0.3168 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255176701.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:31 Heat of formation + Delta-G solvation = -38.596620 kcal Electronic energy + Delta-G solvation = -22926.197448 eV Core-core repulsion = 19750.001137 eV Total energy + Delta-G solvation = -3176.196312 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.22215 -39.88928 -37.34836 -36.52884 -34.90560 -33.62653 -32.34070 -30.57749 -28.43157 -25.84659 -25.51259 -23.86013 -23.41648 -23.25814 -21.27974 -21.17131 -20.49790 -18.49540 -18.15311 -17.47068 -16.75555 -16.23100 -16.20494 -15.80653 -15.29762 -15.23521 -14.98233 -14.89695 -14.42819 -14.33544 -13.66008 -13.54104 -13.46134 -13.13576 -13.06439 -12.76289 -12.54084 -12.41740 -12.26871 -12.12854 -11.95912 -11.67311 -11.54521 -11.51536 -11.49235 -11.43448 -11.18081 -10.98604 -10.76959 -10.41262 -10.04260 -8.92045 -8.01422 -6.24109 1.38358 1.41082 1.48509 1.50829 2.10892 2.41295 2.94911 3.17429 3.43786 3.69547 3.86057 3.92562 3.99573 4.02313 4.12426 4.27109 4.31781 4.48173 4.58059 4.65986 4.74929 4.75934 4.80569 4.92302 4.92852 4.94263 4.98545 5.03998 5.06204 5.12568 5.21643 5.25002 5.32823 5.41045 5.44192 5.49256 5.53531 5.66005 5.80937 6.07798 6.19608 6.39315 6.57777 6.66952 6.96461 7.25978 7.47004 8.93696 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019902 B = 0.004395 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.537962 B = 6368.668258 C = 6987.627432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.106 4.106 3 C 0.222 3.778 4 H 0.004 0.996 5 C -0.550 4.550 6 H 0.054 0.946 7 C 0.023 3.977 8 N -0.911 5.911 9 Si 0.945 3.055 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.271 1.271 13 N -0.530 5.530 14 C 0.063 3.937 15 C -0.106 4.106 16 C -0.116 4.116 17 C 0.158 3.842 18 H 0.070 0.930 19 N -0.711 5.711 20 C 0.537 3.463 21 O -0.587 6.587 22 C -0.203 4.203 23 C -0.139 4.139 24 C -0.151 4.151 25 C 0.068 3.932 26 H 0.055 0.945 27 H 0.031 0.969 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.034 0.966 31 H 0.261 0.739 32 H 0.064 0.936 33 H 0.023 0.977 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.412 0.588 39 H 0.149 0.851 40 H 0.087 0.913 41 H 0.132 0.868 42 H 0.128 0.872 43 H 0.085 0.915 44 H 0.031 0.969 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.252 13.200 10.290 16.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.144 4.144 3 C 0.115 3.885 4 H 0.022 0.978 5 C -0.589 4.589 6 H 0.072 0.928 7 C -0.177 4.177 8 N -0.550 5.550 9 Si 0.772 3.228 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.196 1.196 13 N -0.254 5.254 14 C -0.065 4.065 15 C -0.144 4.144 16 C -0.155 4.155 17 C 0.053 3.947 18 H 0.088 0.912 19 N -0.362 5.362 20 C 0.326 3.674 21 O -0.467 6.467 22 C -0.224 4.224 23 C -0.177 4.177 24 C -0.188 4.188 25 C -0.061 4.061 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.042 0.958 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.248 0.752 39 H 0.167 0.833 40 H 0.105 0.895 41 H 0.151 0.849 42 H 0.146 0.854 43 H 0.103 0.897 44 H 0.050 0.950 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.399 12.731 10.624 16.754 hybrid contribution 2.158 -0.229 -1.046 2.410 sum -0.240 12.502 9.577 15.751 Atomic orbital electron populations 1.21576 0.96552 0.99748 1.00537 1.21449 0.94282 0.98223 1.00449 1.19038 0.92015 0.91492 0.85942 0.97827 1.21962 0.93864 1.37785 1.05255 0.92824 1.25586 1.01599 0.94953 0.95547 1.70003 1.36248 1.38907 1.09850 0.85761 0.81624 0.78399 0.77046 1.20461 1.21158 1.19551 1.62240 1.57245 1.01591 1.04331 1.21949 0.95675 0.98747 0.90118 1.21538 1.01677 0.94353 0.96865 1.21823 1.00316 0.96052 0.97267 1.20768 0.99870 0.79209 0.94857 0.91214 1.45924 1.33578 1.06405 1.50249 1.20299 0.80745 0.88560 0.77827 1.90663 1.32290 1.80226 1.43564 1.22282 1.10315 0.89229 1.00538 1.23040 0.97911 1.02256 0.94475 1.23020 0.93963 1.00038 1.01775 1.21931 0.98298 0.89817 0.96073 0.92628 0.94986 0.93614 0.91865 0.94761 0.92992 0.91748 0.95845 0.91741 0.89905 0.91800 0.92135 0.75169 0.83346 0.89490 0.84947 0.85429 0.89691 0.95036 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.10 9.80 71.98 0.71 -4.40 16 2 C -0.11 -4.96 5.17 30.59 0.16 -4.80 16 3 C 0.22 10.76 1.70 44.17 0.08 10.83 16 4 H 0.00 0.21 7.98 -2.39 -0.02 0.19 16 5 C -0.55 -28.48 7.23 25.60 0.19 -28.29 16 6 H 0.05 2.76 5.84 -2.91 -0.02 2.75 16 7 C 0.02 1.23 5.29 84.65 0.45 1.68 16 8 N -0.91 -50.82 11.29 21.45 0.24 -50.58 16 9 Si 0.95 42.18 29.54 68.60 2.03 44.20 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 13 N -0.53 -21.58 4.06 -875.54 -3.55 -25.13 16 14 C 0.06 2.36 4.78 86.32 0.41 2.77 16 15 C -0.11 -3.20 6.09 30.65 0.19 -3.01 16 16 C -0.12 -3.41 5.58 30.68 0.17 -3.24 16 17 C 0.16 5.00 2.62 45.05 0.12 5.11 16 18 H 0.07 2.55 7.58 -2.39 -0.02 2.53 16 19 N -0.71 -18.49 5.08 -442.28 -2.25 -20.73 16 20 C 0.54 14.57 7.58 87.65 0.66 15.23 16 21 O -0.59 -20.85 15.92 -3.03 -0.05 -20.89 16 22 C -0.20 -3.67 6.19 -11.54 -0.07 -3.74 16 23 C -0.14 -2.02 10.24 30.62 0.31 -1.70 16 24 C -0.15 -2.47 10.05 30.62 0.31 -2.17 16 25 C 0.07 2.49 4.66 86.33 0.40 2.90 16 26 H 0.05 2.14 7.75 -2.39 -0.02 2.12 16 27 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 28 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.06 3.36 5.95 -2.39 -0.01 3.35 16 30 H 0.03 1.57 6.23 -2.39 -0.01 1.55 16 31 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 32 H 0.06 2.49 6.13 -2.39 -0.01 2.48 16 33 H 0.02 0.94 6.36 -2.39 -0.02 0.93 16 34 H 0.06 1.98 8.14 -2.39 -0.02 1.97 16 35 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.41 8.63 8.60 -92.71 -0.80 7.83 16 39 H 0.15 1.91 8.14 -2.39 -0.02 1.90 16 40 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.08 1.81 7.67 -2.39 -0.02 1.79 16 44 H 0.03 1.21 7.31 -2.39 -0.02 1.19 16 45 H 0.06 2.22 8.01 -2.38 -0.02 2.20 16 Total: -1.00 -62.69 349.35 0.67 -62.02 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: 0.17 Total: 23.94 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: 4.08 Total: -12.83 kcal Atomic # 7 Polarization: -90.88 SS G_CDS: -5.56 Total: -96.44 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.05 Total: -20.89 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Total: -62.69 0.67 -62.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176701.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.423 kcal (2) G-P(sol) polarization free energy of solvation -62.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds