Wall clock time and date at job start Tue Mar 31 2020 01:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47090 * 2 1 4 4 H 1.08994 * 109.46959 * 184.47753 * 3 2 1 5 5 C 1.50707 * 109.46962 * 64.47688 * 3 2 1 6 6 H 1.07993 * 119.99980 * 239.99725 * 5 3 2 7 7 C 1.37874 * 119.99557 * 60.00553 * 5 3 2 8 8 N 1.31509 * 120.00903 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99576 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47114 * 59.99386 * 9 7 5 11 11 H 1.48495 * 109.47331 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47115 * 299.99526 * 9 7 5 13 13 N 1.46895 * 109.47012 * 304.48129 * 3 2 1 14 14 C 1.46850 * 110.99735 * 309.05184 * 13 3 2 15 15 C 1.53121 * 109.47122 * 173.75598 * 14 13 3 16 16 C 1.52702 * 109.29763 * 58.48308 * 15 14 13 17 17 C 1.54113 * 109.82459 * 182.27195 * 16 15 14 18 18 C 1.54708 * 101.67519 * 215.62622 * 17 16 15 19 19 C 1.51320 * 104.21342 * 24.46828 * 18 17 16 20 20 O 1.21276 * 124.94590 * 163.82093 * 19 18 17 21 21 N 1.34532 * 110.09855 * 343.80088 * 19 18 17 22 22 C 1.46497 * 124.41520 * 179.86979 * 21 19 18 23 23 C 1.52706 * 110.18363 * 303.37277 * 16 15 14 24 24 C 1.46846 * 111.00221 * 184.72618 * 13 3 2 25 25 H 1.08994 * 109.47305 * 295.00155 * 1 2 3 26 26 H 1.08998 * 109.46475 * 54.99894 * 1 2 3 27 27 H 1.08998 * 109.46937 * 174.99725 * 1 2 3 28 28 H 1.09001 * 109.46887 * 119.99536 * 2 1 3 29 29 H 1.09000 * 109.47607 * 239.99698 * 2 1 3 30 30 H 0.96999 * 120.00369 * 180.02562 * 8 7 5 31 31 H 1.08995 * 109.47551 * 293.75838 * 14 13 3 32 32 H 1.09003 * 109.46695 * 53.75906 * 14 13 3 33 33 H 1.09005 * 109.49825 * 298.53490 * 15 14 13 34 34 H 1.09003 * 109.52914 * 178.44788 * 15 14 13 35 35 H 1.08998 * 110.98302 * 333.72656 * 17 16 15 36 36 H 1.08997 * 110.98521 * 97.52368 * 17 16 15 37 37 H 1.08996 * 110.48204 * 143.15839 * 18 17 16 38 38 H 1.09008 * 110.47894 * 265.65729 * 18 17 16 39 39 H 1.08997 * 109.47434 * 264.12816 * 22 21 19 40 40 H 1.08999 * 109.47427 * 24.12663 * 22 21 19 41 41 H 1.09001 * 109.47293 * 144.12757 * 22 21 19 42 42 H 1.08997 * 109.50247 * 296.67332 * 23 16 15 43 43 H 1.09005 * 109.52932 * 176.58808 * 23 16 15 44 44 H 1.09005 * 109.46896 * 306.24376 * 24 13 3 45 45 H 1.09003 * 109.47265 * 66.23297 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1270 1.4436 -0.0802 5 6 1.6303 2.1202 1.2822 6 1 1.0046 2.9999 1.2520 7 6 2.0543 1.6170 2.4938 8 7 2.8158 0.5455 2.5307 9 14 1.5469 2.4574 4.0831 10 1 0.0660 2.4566 4.1926 11 1 2.1286 1.7262 5.2373 12 1 2.0424 3.8573 4.0829 13 7 1.4640 2.1655 -1.1416 14 6 1.6600 1.4185 -2.3907 15 6 0.9149 2.1220 -3.5284 16 6 1.4350 3.5513 -3.6643 17 6 0.6535 4.2891 -4.7689 18 6 1.7551 5.1804 -5.3898 19 6 3.0445 4.4579 -5.0651 20 8 4.1122 4.6677 -5.6006 21 7 2.8338 3.5493 -4.0956 22 6 3.8693 2.6724 -3.5434 23 6 1.2847 4.2949 -2.3390 24 6 2.0178 3.5220 -1.2392 25 1 -0.3633 0.4343 0.9313 26 1 -0.3632 0.5895 -0.8418 27 1 -0.3633 -1.0237 -0.0896 28 1 1.8933 -0.5138 0.8900 29 1 1.8935 -0.5139 -0.8899 30 1 3.1138 0.1914 3.3832 31 1 2.7235 1.3750 -2.6250 32 1 1.2721 0.4066 -2.2734 33 1 -0.1521 2.1426 -3.3066 34 1 1.0823 1.5837 -4.4613 35 1 0.2593 3.5869 -5.5035 36 1 -0.1456 4.8957 -4.3430 37 1 1.6214 5.2560 -6.4689 38 1 1.7457 6.1709 -4.9348 39 1 3.8362 1.7076 -4.0495 40 1 4.8484 3.1275 -3.6927 41 1 3.6938 2.5295 -2.4772 42 1 0.2279 4.3753 -2.0846 43 1 1.7138 5.2928 -2.4303 44 1 1.8897 4.0362 -0.2866 45 1 3.0792 3.4647 -1.4811 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255177066.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:50 Heat of formation + Delta-G solvation = -10.536478 kcal Electronic energy + Delta-G solvation = -24131.057993 eV Core-core repulsion = 20956.078460 eV Total energy + Delta-G solvation = -3174.979533 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.14026 -38.29514 -36.37157 -33.63328 -32.93935 -31.55587 -30.78201 -29.59995 -26.87841 -26.51503 -24.75044 -23.40502 -22.40666 -21.23140 -20.62250 -19.06252 -18.78560 -16.35795 -16.21223 -16.17800 -15.46950 -14.79656 -14.60929 -14.25140 -13.92474 -13.71696 -13.54520 -13.41833 -12.97965 -12.81817 -12.42130 -12.36998 -12.26859 -11.98181 -11.95156 -11.46890 -11.33924 -10.93951 -10.86919 -10.84718 -10.72069 -10.51398 -10.29065 -10.13943 -9.87717 -9.67197 -9.60622 -9.38928 -8.86754 -8.51494 -8.38684 -7.09711 -6.02666 -4.06668 2.66201 3.12827 3.29716 3.34976 3.37250 4.31563 4.38019 4.43443 4.69770 4.88409 4.96460 5.10355 5.25645 5.28914 5.37590 5.55155 5.60099 5.61832 5.70640 5.78281 5.79916 5.82415 5.92424 6.00714 6.03038 6.17790 6.31312 6.37794 6.45758 6.52983 6.57449 6.67431 6.74211 6.74681 7.06049 7.26683 7.27963 7.34554 7.59674 7.71938 7.81267 8.17209 8.26433 8.31380 8.56617 8.98580 9.57776 11.03309 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025703 B = 0.005108 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.085405 B = 5480.376215 C = 5677.608937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.115 4.115 3 C 0.219 3.781 4 H -0.005 1.005 5 C -0.495 4.495 6 H 0.061 0.939 7 C 0.060 3.940 8 N -0.893 5.893 9 Si 0.893 3.107 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.526 5.526 14 C 0.023 3.977 15 C -0.111 4.111 16 C 0.158 3.842 17 C -0.123 4.123 18 C -0.154 4.154 19 C 0.513 3.487 20 O -0.545 6.545 21 N -0.601 5.601 22 C 0.078 3.922 23 C -0.117 4.117 24 C 0.056 3.944 25 H 0.054 0.946 26 H 0.047 0.953 27 H 0.015 0.985 28 H 0.093 0.907 29 H 0.013 0.987 30 H 0.260 0.740 31 H 0.042 0.958 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.055 0.945 40 H 0.069 0.931 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.060 0.940 44 H 0.085 0.915 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.856 4.559 -12.145 13.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.153 4.153 3 C 0.113 3.887 4 H 0.013 0.987 5 C -0.533 4.533 6 H 0.079 0.921 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.721 3.279 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.205 1.205 13 N -0.251 5.251 14 C -0.105 4.105 15 C -0.150 4.150 16 C 0.073 3.927 17 C -0.161 4.161 18 C -0.194 4.194 19 C 0.301 3.699 20 O -0.424 6.424 21 N -0.334 5.334 22 C -0.063 4.063 23 C -0.156 4.156 24 C -0.072 4.072 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.034 0.966 28 H 0.112 0.888 29 H 0.032 0.968 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.120 0.880 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.114 0.886 42 H 0.100 0.900 43 H 0.078 0.922 44 H 0.103 0.897 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -4.635 4.519 -12.157 13.773 hybrid contribution 0.642 0.229 0.890 1.121 sum -3.992 4.748 -11.267 12.862 Atomic orbital electron populations 1.21496 0.97301 0.97323 1.01896 1.21629 0.95053 0.98330 1.00304 1.19220 0.91879 0.90467 0.87102 0.98722 1.20999 1.30734 1.11919 0.89684 0.92106 1.24893 0.95202 0.95077 0.98947 1.69851 1.35498 1.22179 1.25719 0.86645 0.78855 0.79461 0.82936 1.20275 1.21464 1.20452 1.62030 1.59133 1.01409 1.02538 1.22626 0.98784 0.98546 0.90518 1.21795 1.01346 0.93302 0.98520 1.20881 0.80120 0.97070 0.94589 1.22672 0.97321 0.98575 0.97494 1.22344 0.93480 1.00286 1.03272 1.20943 0.90128 0.79834 0.78972 1.90691 1.29385 1.67517 1.54757 1.48134 1.10067 1.37595 1.37561 1.22195 0.90433 0.93161 1.00546 1.21959 1.02321 0.97861 0.93424 1.22069 0.95210 0.91374 0.98520 0.92713 0.93375 0.96631 0.88841 0.96799 0.92961 0.94078 0.90341 0.89919 0.92038 0.90049 0.89031 0.88474 0.88025 0.92605 0.91210 0.88589 0.90014 0.92160 0.89665 0.95557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.52 9.22 37.16 0.34 -2.18 16 2 C -0.11 -2.58 4.93 -26.73 -0.13 -2.71 16 3 C 0.22 5.06 1.77 -68.86 -0.12 4.94 16 4 H 0.00 -0.12 8.13 -51.93 -0.42 -0.55 16 5 C -0.49 -12.59 6.91 -34.44 -0.24 -12.83 16 6 H 0.06 1.56 7.05 -52.49 -0.37 1.19 16 7 C 0.06 1.57 5.29 -17.82 -0.09 1.48 16 8 N -0.89 -24.46 11.29 55.43 0.63 -23.83 16 9 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 N -0.53 -9.91 3.62 -227.97 -0.83 -10.74 16 14 C 0.02 0.38 4.29 -3.79 -0.02 0.36 16 15 C -0.11 -1.44 4.85 -26.82 -0.13 -1.57 16 16 C 0.16 1.96 0.71 -131.61 -0.09 1.87 16 17 C -0.12 -1.15 6.18 -25.25 -0.16 -1.30 16 18 C -0.15 -1.57 6.86 -26.68 -0.18 -1.76 16 19 C 0.51 7.53 8.03 -10.79 -0.09 7.45 16 20 O -0.55 -10.05 17.52 5.56 0.10 -9.96 16 21 N -0.60 -8.44 2.79 -166.19 -0.46 -8.91 16 22 C 0.08 1.13 8.35 59.85 0.50 1.63 16 23 C -0.12 -1.60 4.97 -26.82 -0.13 -1.73 16 24 C 0.06 0.99 5.01 -3.80 -0.02 0.97 16 25 H 0.05 1.23 7.53 -51.93 -0.39 0.84 16 26 H 0.05 0.93 6.61 -51.93 -0.34 0.59 16 27 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.09 2.40 5.96 -51.93 -0.31 2.09 16 29 H 0.01 0.28 6.46 -51.93 -0.34 -0.05 16 30 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.04 0.67 3.62 -51.93 -0.19 0.49 16 32 H 0.08 1.33 5.33 -51.93 -0.28 1.05 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.68 7.89 -51.93 -0.41 0.27 16 36 H 0.09 0.71 7.85 -51.93 -0.41 0.31 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.10 0.92 8.14 -51.92 -0.42 0.50 16 39 H 0.06 0.76 7.61 -51.93 -0.40 0.36 16 40 H 0.07 1.04 7.81 -51.93 -0.41 0.63 16 41 H 0.10 1.53 3.31 -51.93 -0.17 1.36 16 42 H 0.08 1.08 8.13 -51.93 -0.42 0.66 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.09 1.67 6.61 -51.93 -0.34 1.33 16 45 H 0.03 0.48 5.04 -51.93 -0.26 0.22 16 LS Contribution 325.57 15.07 4.91 4.91 Total: -1.00 -28.79 325.57 -8.37 -37.16 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -7.12 Total: 1.12 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -0.56 Total: -5.39 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: -0.66 Total: -43.48 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.10 Total: -9.96 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.79 -8.37 -37.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177066.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.621 kcal (2) G-P(sol) polarization free energy of solvation -28.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds