Wall clock time and date at job start Tue Mar 31 2020 01:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47090 * 2 1 4 4 H 1.08994 * 109.46959 * 184.47753 * 3 2 1 5 5 C 1.50707 * 109.46962 * 64.47688 * 3 2 1 6 6 H 1.07993 * 119.99980 * 239.99725 * 5 3 2 7 7 C 1.37874 * 119.99557 * 60.00553 * 5 3 2 8 8 N 1.31509 * 120.00903 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99576 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47114 * 59.99386 * 9 7 5 11 11 H 1.48495 * 109.47331 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47115 * 299.99526 * 9 7 5 13 13 N 1.46895 * 109.47012 * 304.48129 * 3 2 1 14 14 C 1.46850 * 110.99735 * 309.05184 * 13 3 2 15 15 C 1.53121 * 109.47122 * 173.75598 * 14 13 3 16 16 C 1.52702 * 109.29763 * 58.48308 * 15 14 13 17 17 C 1.54113 * 109.82459 * 182.27195 * 16 15 14 18 18 C 1.54708 * 101.67519 * 215.62622 * 17 16 15 19 19 C 1.51320 * 104.21342 * 24.46828 * 18 17 16 20 20 O 1.21276 * 124.94590 * 163.82093 * 19 18 17 21 21 N 1.34532 * 110.09855 * 343.80088 * 19 18 17 22 22 C 1.46497 * 124.41520 * 179.86979 * 21 19 18 23 23 C 1.52706 * 110.18363 * 303.37277 * 16 15 14 24 24 C 1.46846 * 111.00221 * 184.72618 * 13 3 2 25 25 H 1.08994 * 109.47305 * 295.00155 * 1 2 3 26 26 H 1.08998 * 109.46475 * 54.99894 * 1 2 3 27 27 H 1.08998 * 109.46937 * 174.99725 * 1 2 3 28 28 H 1.09001 * 109.46887 * 119.99536 * 2 1 3 29 29 H 1.09000 * 109.47607 * 239.99698 * 2 1 3 30 30 H 0.96999 * 120.00369 * 180.02562 * 8 7 5 31 31 H 1.08995 * 109.47551 * 293.75838 * 14 13 3 32 32 H 1.09003 * 109.46695 * 53.75906 * 14 13 3 33 33 H 1.09005 * 109.49825 * 298.53490 * 15 14 13 34 34 H 1.09003 * 109.52914 * 178.44788 * 15 14 13 35 35 H 1.08998 * 110.98302 * 333.72656 * 17 16 15 36 36 H 1.08997 * 110.98521 * 97.52368 * 17 16 15 37 37 H 1.08996 * 110.48204 * 143.15839 * 18 17 16 38 38 H 1.09008 * 110.47894 * 265.65729 * 18 17 16 39 39 H 1.08997 * 109.47434 * 264.12816 * 22 21 19 40 40 H 1.08999 * 109.47427 * 24.12663 * 22 21 19 41 41 H 1.09001 * 109.47293 * 144.12757 * 22 21 19 42 42 H 1.08997 * 109.50247 * 296.67332 * 23 16 15 43 43 H 1.09005 * 109.52932 * 176.58808 * 23 16 15 44 44 H 1.09005 * 109.46896 * 306.24376 * 24 13 3 45 45 H 1.09003 * 109.47265 * 66.23297 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1270 1.4436 -0.0802 5 6 1.6303 2.1202 1.2822 6 1 1.0046 2.9999 1.2520 7 6 2.0543 1.6170 2.4938 8 7 2.8158 0.5455 2.5307 9 14 1.5469 2.4574 4.0831 10 1 0.0660 2.4566 4.1926 11 1 2.1286 1.7262 5.2373 12 1 2.0424 3.8573 4.0829 13 7 1.4640 2.1655 -1.1416 14 6 1.6600 1.4185 -2.3907 15 6 0.9149 2.1220 -3.5284 16 6 1.4350 3.5513 -3.6643 17 6 0.6535 4.2891 -4.7689 18 6 1.7551 5.1804 -5.3898 19 6 3.0445 4.4579 -5.0651 20 8 4.1122 4.6677 -5.6006 21 7 2.8338 3.5493 -4.0956 22 6 3.8693 2.6724 -3.5434 23 6 1.2847 4.2949 -2.3390 24 6 2.0178 3.5220 -1.2392 25 1 -0.3633 0.4343 0.9313 26 1 -0.3632 0.5895 -0.8418 27 1 -0.3633 -1.0237 -0.0896 28 1 1.8933 -0.5138 0.8900 29 1 1.8935 -0.5139 -0.8899 30 1 3.1138 0.1914 3.3832 31 1 2.7235 1.3750 -2.6250 32 1 1.2721 0.4066 -2.2734 33 1 -0.1521 2.1426 -3.3066 34 1 1.0823 1.5837 -4.4613 35 1 0.2593 3.5869 -5.5035 36 1 -0.1456 4.8957 -4.3430 37 1 1.6214 5.2560 -6.4689 38 1 1.7457 6.1709 -4.9348 39 1 3.8362 1.7076 -4.0495 40 1 4.8484 3.1275 -3.6927 41 1 3.6938 2.5295 -2.4772 42 1 0.2279 4.3753 -2.0846 43 1 1.7138 5.2928 -2.4303 44 1 1.8897 4.0362 -0.2866 45 1 3.0792 3.4647 -1.4811 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255177066.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:49 Heat of formation + Delta-G solvation = -28.128678 kcal Electronic energy + Delta-G solvation = -24131.820848 eV Core-core repulsion = 20956.078460 eV Total energy + Delta-G solvation = -3175.742388 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.24096 -39.65521 -37.77033 -35.24536 -33.97820 -33.33355 -32.05927 -30.95704 -28.44747 -27.77929 -26.13662 -24.93427 -23.79760 -22.34293 -21.89267 -20.70623 -19.90959 -18.11095 -17.53906 -17.33346 -16.99716 -16.20889 -15.90007 -15.71490 -15.32729 -15.12966 -14.70097 -14.58266 -14.45764 -14.21222 -13.82881 -13.57049 -13.41075 -13.33174 -13.18616 -12.83834 -12.73199 -12.67230 -12.37299 -12.22802 -12.13414 -11.98498 -11.87055 -11.52914 -11.46789 -11.32994 -10.91943 -10.83275 -10.65849 -10.39579 -9.65484 -8.69503 -8.05101 -6.14758 1.43421 1.44198 1.51015 1.56336 2.05918 2.44671 3.22367 3.34190 3.45400 3.56803 3.79128 3.99165 4.10315 4.21224 4.33892 4.41077 4.44371 4.53456 4.61080 4.62231 4.71893 4.74264 4.76677 4.85359 4.88152 4.93933 4.99117 5.06958 5.13461 5.22540 5.25961 5.27903 5.30931 5.32766 5.48339 5.55051 5.65388 5.77229 5.82534 5.94638 6.22203 6.38765 6.50593 6.84381 6.99179 7.15075 7.53320 8.99445 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025703 B = 0.005108 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.085405 B = 5480.376215 C = 5677.608937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.110 4.110 3 C 0.226 3.774 4 H -0.049 1.049 5 C -0.498 4.498 6 H 0.056 0.944 7 C 0.013 3.987 8 N -0.921 5.921 9 Si 0.949 3.051 10 H -0.271 1.271 11 H -0.290 1.290 12 H -0.276 1.276 13 N -0.521 5.521 14 C 0.019 3.981 15 C -0.102 4.102 16 C 0.155 3.845 17 C -0.108 4.108 18 C -0.143 4.143 19 C 0.502 3.498 20 O -0.593 6.593 21 N -0.603 5.603 22 C 0.082 3.918 23 C -0.107 4.107 24 C 0.056 3.944 25 H 0.030 0.970 26 H 0.063 0.937 27 H 0.036 0.964 28 H 0.059 0.941 29 H 0.027 0.973 30 H 0.258 0.742 31 H 0.036 0.964 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.078 0.922 42 H 0.096 0.904 43 H 0.070 0.930 44 H 0.057 0.943 45 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.487 5.649 -13.921 16.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.149 4.149 3 C 0.119 3.881 4 H -0.032 1.032 5 C -0.537 4.537 6 H 0.074 0.926 7 C -0.185 4.185 8 N -0.562 5.562 9 Si 0.775 3.225 10 H -0.196 1.196 11 H -0.216 1.216 12 H -0.201 1.201 13 N -0.246 5.246 14 C -0.108 4.108 15 C -0.141 4.141 16 C 0.071 3.929 17 C -0.146 4.146 18 C -0.183 4.183 19 C 0.292 3.708 20 O -0.474 6.474 21 N -0.335 5.335 22 C -0.060 4.060 23 C -0.146 4.146 24 C -0.073 4.073 25 H 0.049 0.951 26 H 0.081 0.919 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.115 0.885 34 H 0.098 0.902 35 H 0.119 0.881 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.096 0.904 42 H 0.114 0.886 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -7.303 5.618 -13.939 16.709 hybrid contribution 1.537 -0.135 1.445 2.114 sum -5.765 5.483 -12.494 14.812 Atomic orbital electron populations 1.21347 0.95389 0.98727 1.01151 1.21488 0.96598 0.97520 0.99267 1.18970 0.89396 0.91441 0.88326 1.03185 1.21244 1.29997 1.11576 0.90838 0.92565 1.25589 0.95437 0.95677 1.01839 1.69998 1.36689 1.23442 1.26028 0.85753 0.78686 0.78497 0.79533 1.19585 1.21571 1.20102 1.61990 1.58215 1.01797 1.02571 1.22717 0.99225 0.98452 0.90418 1.21760 1.01496 0.93291 0.97504 1.21033 0.79590 0.97141 0.95175 1.22711 0.96993 0.98558 0.96329 1.22392 0.90671 1.00451 1.04791 1.21823 0.91086 0.79648 0.78262 1.90664 1.31629 1.68827 1.56306 1.48312 1.10626 1.37250 1.37328 1.22033 0.90560 0.93818 0.99555 1.21903 1.02459 0.97724 0.92497 1.22061 0.95284 0.90976 0.98928 0.95113 0.91854 0.94535 0.92273 0.95412 0.93296 0.94624 0.90992 0.88457 0.90250 0.88120 0.86356 0.86530 0.86425 0.91720 0.92334 0.90371 0.88574 0.91095 0.92466 0.96919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.37 9.22 71.98 0.66 -3.71 16 2 C -0.11 -5.04 4.93 30.60 0.15 -4.89 16 3 C 0.23 10.77 1.77 44.17 0.08 10.85 16 4 H -0.05 -2.73 8.13 -2.39 -0.02 -2.75 16 5 C -0.50 -26.00 6.91 25.60 0.18 -25.83 16 6 H 0.06 2.93 7.05 -2.91 -0.02 2.91 16 7 C 0.01 0.68 5.29 84.65 0.45 1.13 16 8 N -0.92 -52.26 11.29 21.45 0.24 -52.01 16 9 Si 0.95 43.01 29.54 68.60 2.03 45.04 16 10 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 12 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 13 N -0.52 -19.57 3.62 -875.18 -3.17 -22.75 16 14 C 0.02 0.61 4.29 86.35 0.37 0.98 16 15 C -0.10 -2.30 4.85 30.54 0.15 -2.15 16 16 C 0.15 3.33 0.71 3.81 0.00 3.34 16 17 C -0.11 -1.45 6.18 31.55 0.20 -1.25 16 18 C -0.14 -2.33 6.86 30.63 0.21 -2.12 16 19 C 0.50 13.78 8.03 87.89 0.71 14.49 16 20 O -0.59 -21.61 17.52 -3.02 -0.05 -21.66 16 21 N -0.60 -16.01 2.79 -798.23 -2.23 -18.24 16 22 C 0.08 2.43 8.35 127.77 1.07 3.49 16 23 C -0.11 -2.66 4.97 30.53 0.15 -2.51 16 24 C 0.06 1.96 5.01 86.35 0.43 2.39 16 25 H 0.03 1.35 7.53 -2.39 -0.02 1.34 16 26 H 0.06 2.32 6.61 -2.39 -0.02 2.31 16 27 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.06 3.14 5.96 -2.39 -0.01 3.12 16 29 H 0.03 1.16 6.46 -2.39 -0.02 1.14 16 30 H 0.26 14.14 8.31 -92.71 -0.77 13.36 16 31 H 0.04 1.17 3.62 -2.39 -0.01 1.16 16 32 H 0.07 2.33 5.33 -2.39 -0.01 2.32 16 33 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.10 1.06 7.89 -2.39 -0.02 1.04 16 36 H 0.12 1.06 7.85 -2.39 -0.02 1.05 16 37 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.12 1.60 8.14 -2.38 -0.02 1.58 16 39 H 0.06 1.76 7.61 -2.39 -0.02 1.74 16 40 H 0.06 1.82 7.81 -2.39 -0.02 1.81 16 41 H 0.08 2.61 3.31 -2.39 -0.01 2.60 16 42 H 0.10 2.17 8.13 -2.39 -0.02 2.15 16 43 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 44 H 0.06 2.30 6.61 -2.38 -0.02 2.29 16 45 H 0.01 0.49 5.04 -2.39 -0.01 0.48 16 Total: -1.00 -65.63 325.57 2.60 -63.04 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.98 Total: 12.37 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: 4.80 Total: -5.78 kcal Atomic # 7 Polarization: -87.84 SS G_CDS: -5.16 Total: -93.00 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.05 Total: -21.66 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -65.63 2.60 -63.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177066.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.909 kcal (2) G-P(sol) polarization free energy of solvation -65.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds