Wall clock time and date at job start Tue Mar 31 2020 01:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46688 * 2 1 4 4 H 1.08994 * 109.47247 * 304.76159 * 3 2 1 5 5 C 1.50704 * 109.47116 * 64.75928 * 3 2 1 6 6 H 1.07997 * 120.00249 * 84.65869 * 5 3 2 7 7 C 1.37878 * 119.99888 * 264.66337 * 5 3 2 8 8 N 1.31516 * 120.00134 * 352.60964 * 7 5 3 9 9 Si 1.86796 * 120.00112 * 172.61188 * 7 5 3 10 10 H 1.48504 * 109.47125 * 59.99897 * 9 7 5 11 11 H 1.48498 * 109.47289 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47243 * 299.99748 * 9 7 5 13 13 N 1.46896 * 109.46957 * 184.75683 * 3 2 1 14 14 C 1.46696 * 111.00063 * 71.87822 * 13 3 2 15 15 C 1.53289 * 110.17423 * 175.12049 * 14 13 3 16 16 C 1.52717 * 108.58187 * 58.27656 * 15 14 13 17 17 H 1.09000 * 108.79378 * 59.57532 * 16 15 14 18 18 C 1.53055 * 108.83984 * 301.18791 * 16 15 14 19 19 H 1.09004 * 109.42558 * 301.07460 * 18 16 15 20 20 C 1.52852 * 108.42148 * 181.78480 * 18 16 15 21 21 C 1.53216 * 108.10638 * 67.55595 * 20 18 16 22 22 C 1.50053 * 110.63960 * 313.82677 * 21 20 18 23 23 O 1.21278 * 117.97674 * 195.70485 * 22 21 20 24 24 N 1.33716 * 124.04622 * 15.70526 * 22 21 20 25 25 C 1.46503 * 118.55928 * 175.79373 * 24 22 21 26 26 C 1.47111 * 110.99915 * 306.75482 * 13 3 2 27 27 H 1.09007 * 109.46568 * 175.11041 * 1 2 3 28 28 H 1.09001 * 109.47245 * 55.11679 * 1 2 3 29 29 H 1.09000 * 109.47166 * 295.11164 * 1 2 3 30 30 H 1.09005 * 109.46778 * 119.99672 * 2 1 3 31 31 H 1.08991 * 109.47403 * 239.99804 * 2 1 3 32 32 H 0.96998 * 120.00554 * 180.02562 * 8 7 5 33 33 H 1.09008 * 109.35384 * 295.33153 * 14 13 3 34 34 H 1.08996 * 109.35726 * 54.90198 * 14 13 3 35 35 H 1.09000 * 109.62256 * 178.00988 * 15 14 13 36 36 H 1.09003 * 109.61453 * 298.55059 * 15 14 13 37 37 H 1.08998 * 109.73547 * 187.20400 * 20 18 16 38 38 H 1.08999 * 109.73373 * 307.85222 * 20 18 16 39 39 H 1.08998 * 109.24698 * 74.13145 * 21 20 18 40 40 H 1.09012 * 109.24142 * 193.53220 * 21 20 18 41 41 H 1.09001 * 109.47067 * 269.98214 * 25 24 22 42 42 H 1.09006 * 109.47003 * 29.98080 * 25 24 22 43 43 H 1.08999 * 109.47456 * 149.97622 * 25 24 22 44 44 H 1.08998 * 109.59177 * 305.34140 * 26 13 3 45 45 H 1.08996 * 109.58859 * 65.78278 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6086 1.9804 -0.8442 5 6 1.6361 2.1181 1.2852 6 1 2.2465 2.0062 2.1691 7 6 0.4873 2.8790 1.3326 8 7 -0.1775 3.1357 0.2273 9 14 -0.1250 3.5452 2.9668 10 1 0.9126 4.4247 3.5628 11 1 -1.3690 4.3261 2.7482 12 1 -0.4050 2.4151 3.8885 13 7 3.5044 1.4442 -0.1149 14 6 3.9263 1.0550 -1.4648 15 6 5.4482 1.1798 -1.5997 16 6 6.1046 0.2921 -0.5446 17 1 5.7886 -0.7384 -0.7067 18 6 5.6331 0.7399 0.8410 19 1 5.9023 1.7849 0.9953 20 6 6.3298 -0.1250 1.8912 21 6 7.8236 0.2149 1.8732 22 6 8.3385 0.2620 0.4645 23 8 9.5391 0.2298 0.2962 24 7 7.5553 0.3373 -0.6166 25 6 8.1874 0.4707 -1.9315 26 6 4.1152 0.5929 0.9178 27 1 -0.3633 -1.0240 -0.0876 28 1 -0.3634 0.5877 -0.8430 29 1 -0.3633 0.4361 0.9305 30 1 1.8933 -0.5138 0.8901 31 1 1.8934 -0.5138 -0.8899 32 1 -0.9856 3.6713 0.2605 33 1 3.6306 0.0226 -1.6522 34 1 3.4445 1.7047 -2.1954 35 1 5.7554 0.8551 -2.5938 36 1 5.7457 2.2166 -1.4422 37 1 5.9158 0.0878 2.8768 38 1 6.1885 -1.1791 1.6525 39 1 7.9769 1.1858 2.3444 40 1 8.3717 -0.5448 2.4308 41 1 8.3168 1.5271 -2.1669 42 1 9.1604 -0.0205 -1.9183 43 1 7.5554 0.0047 -2.6875 44 1 3.7671 0.9057 1.9022 45 1 3.8396 -0.4472 0.7439 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255177852.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:36 Heat of formation + Delta-G solvation = -39.997044 kcal Electronic energy + Delta-G solvation = -23642.040212 eV Core-core repulsion = 20465.783173 eV Total energy + Delta-G solvation = -3176.257039 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.77381 -38.50890 -36.15630 -34.41137 -33.49582 -31.51960 -30.16062 -29.55676 -27.16780 -26.31873 -24.16571 -23.87234 -22.46250 -21.42974 -20.65582 -18.86442 -18.72194 -16.64754 -16.47214 -16.06668 -15.52208 -15.13259 -14.57082 -14.13662 -14.03624 -13.89491 -13.62036 -13.38249 -13.02150 -12.88437 -12.62759 -12.41482 -12.34399 -11.90781 -11.52483 -11.43911 -11.35561 -11.04533 -10.92117 -10.85187 -10.72371 -10.52395 -10.35231 -10.33296 -10.11186 -9.80236 -9.55992 -9.39345 -8.99503 -8.62335 -8.42389 -7.14416 -6.05220 -4.05419 2.67252 3.06024 3.29559 3.35068 3.37452 4.37676 4.49492 4.65886 4.72299 4.81891 4.95070 5.18045 5.26814 5.32345 5.33491 5.47555 5.54134 5.64740 5.69582 5.78347 5.79725 5.87097 5.90050 5.94069 6.02742 6.15974 6.23606 6.27194 6.35147 6.41729 6.46023 6.55648 6.61217 6.63571 6.87582 7.12406 7.19449 7.46696 7.49445 7.53100 7.80846 8.05190 8.19256 8.32064 8.56880 9.00188 9.56566 11.03365 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024687 B = 0.004834 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.928960 B = 5790.429187 C = 6276.006746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.139 4.139 3 C 0.203 3.797 4 H 0.072 0.928 5 C -0.496 4.496 6 H 0.056 0.944 7 C 0.070 3.930 8 N -0.888 5.888 9 Si 0.887 3.113 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.531 5.531 14 C 0.058 3.942 15 C -0.120 4.120 16 C 0.144 3.856 17 H 0.063 0.937 18 C -0.099 4.099 19 H 0.086 0.914 20 C -0.118 4.118 21 C -0.131 4.131 22 C 0.517 3.483 23 O -0.567 6.567 24 N -0.600 5.600 25 C 0.079 3.921 26 C 0.074 3.926 27 H 0.014 0.986 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.041 0.959 31 H 0.021 0.979 32 H 0.261 0.739 33 H 0.023 0.977 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.054 0.946 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.732 -6.478 -1.696 11.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.179 4.179 3 C 0.098 3.902 4 H 0.090 0.910 5 C -0.534 4.534 6 H 0.074 0.926 7 C -0.132 4.132 8 N -0.527 5.527 9 Si 0.715 3.285 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.254 5.254 14 C -0.071 4.071 15 C -0.159 4.159 16 C 0.041 3.959 17 H 0.081 0.919 18 C -0.118 4.118 19 H 0.104 0.896 20 C -0.156 4.156 21 C -0.170 4.170 22 C 0.306 3.694 23 O -0.447 6.447 24 N -0.331 5.331 25 C -0.064 4.064 26 C -0.055 4.055 27 H 0.034 0.966 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.040 0.960 32 H 0.071 0.929 33 H 0.041 0.959 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.073 0.927 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.106 0.894 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 10.339 -5.912 -1.785 12.043 hybrid contribution -0.803 -0.411 0.652 1.113 sum 9.536 -6.323 -1.133 11.498 Atomic orbital electron populations 1.21420 0.95899 0.97212 1.03241 1.22231 0.96944 1.01141 0.97581 1.19613 0.80083 0.90747 0.99764 0.91001 1.20877 1.07136 1.30154 0.95259 0.92633 1.24865 0.97093 0.95261 0.96008 1.69903 1.17826 1.38793 1.26143 0.86740 0.78211 0.79032 0.84493 1.20286 1.21403 1.20336 1.62309 1.12072 1.50915 1.00128 1.21976 0.92939 0.98521 0.93689 1.21910 0.96350 1.00484 0.97137 1.21005 0.78114 0.99465 0.97321 0.91903 1.21519 0.97120 1.00749 0.92401 0.89605 1.21633 0.93228 1.00171 1.00573 1.21611 0.97516 1.04838 0.93082 1.20305 0.86352 0.75475 0.87270 1.90670 1.15730 1.51375 1.86922 1.47342 1.06921 1.71969 1.06892 1.21635 0.99129 1.01683 0.83947 1.21881 0.90225 0.94968 0.98413 0.96645 0.92869 0.92036 0.94002 0.96042 0.92908 0.95856 0.90834 0.91687 0.90619 0.90067 0.91441 0.88229 0.88499 0.92704 0.90551 0.91255 0.89448 0.95590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.54 9.02 37.16 0.34 -2.21 16 2 C -0.14 -2.87 4.56 -26.73 -0.12 -2.99 16 3 C 0.20 4.60 1.96 -68.86 -0.13 4.46 16 4 H 0.07 1.86 7.03 -51.93 -0.36 1.50 16 5 C -0.50 -12.42 7.56 -34.44 -0.26 -12.69 16 6 H 0.06 1.39 6.37 -52.49 -0.33 1.06 16 7 C 0.07 1.81 4.33 -17.82 -0.08 1.74 16 8 N -0.89 -23.86 12.33 55.43 0.68 -23.17 16 9 Si 0.89 20.32 29.54 -169.99 -5.02 15.30 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 N -0.53 -10.24 4.55 -228.04 -1.04 -11.28 16 14 C 0.06 0.95 5.18 -3.79 -0.02 0.93 16 15 C -0.12 -1.62 5.04 -26.73 -0.13 -1.76 16 16 C 0.14 1.91 2.41 -68.69 -0.17 1.74 16 17 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 18 C -0.10 -1.37 2.06 -90.82 -0.19 -1.56 16 19 H 0.09 1.31 8.11 -51.93 -0.42 0.89 16 20 C -0.12 -1.35 5.46 -26.70 -0.15 -1.50 16 21 C -0.13 -1.51 5.98 -28.08 -0.17 -1.68 16 22 C 0.52 7.49 7.47 -11.77 -0.09 7.40 16 23 O -0.57 -9.96 16.20 5.56 0.09 -9.87 16 24 N -0.60 -7.99 3.15 -175.53 -0.55 -8.55 16 25 C 0.08 0.91 9.33 59.85 0.56 1.47 16 26 C 0.07 1.24 3.97 -3.86 -0.02 1.22 16 27 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.06 1.43 6.84 -51.93 -0.36 1.07 16 30 H 0.04 0.85 6.75 -51.93 -0.35 0.50 16 31 H 0.02 0.41 6.68 -51.93 -0.35 0.06 16 32 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 33 H 0.02 0.38 6.79 -51.92 -0.35 0.02 16 34 H 0.07 1.25 8.00 -51.93 -0.42 0.83 16 35 H 0.06 0.74 6.77 -51.93 -0.35 0.39 16 36 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 39 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.10 1.00 8.14 -51.92 -0.42 0.58 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.94 7.15 -51.93 -0.37 0.57 16 43 H 0.07 0.66 6.96 -51.93 -0.36 0.30 16 44 H 0.09 1.60 6.37 -51.93 -0.33 1.27 16 45 H 0.03 0.43 6.69 -51.93 -0.35 0.08 16 LS Contribution 333.51 15.07 5.03 5.03 Total: -1.00 -28.08 333.51 -9.08 -37.16 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -7.64 Total: 0.81 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -0.63 Total: -5.42 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: -0.91 Total: -43.00 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.08 -9.08 -37.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177852.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.837 kcal (2) G-P(sol) polarization free energy of solvation -28.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds