Wall clock time and date at job start Tue Mar 31 2020 01:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46688 * 2 1 4 4 H 1.08994 * 109.47247 * 304.76159 * 3 2 1 5 5 C 1.50704 * 109.47116 * 64.75928 * 3 2 1 6 6 H 1.07997 * 120.00249 * 84.65869 * 5 3 2 7 7 C 1.37878 * 119.99888 * 264.66337 * 5 3 2 8 8 N 1.31516 * 120.00134 * 352.60964 * 7 5 3 9 9 Si 1.86796 * 120.00112 * 172.61188 * 7 5 3 10 10 H 1.48504 * 109.47125 * 59.99897 * 9 7 5 11 11 H 1.48498 * 109.47289 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47243 * 299.99748 * 9 7 5 13 13 N 1.46896 * 109.46957 * 184.75683 * 3 2 1 14 14 C 1.46696 * 111.00063 * 71.87822 * 13 3 2 15 15 C 1.53289 * 110.17423 * 175.12049 * 14 13 3 16 16 C 1.52717 * 108.58187 * 58.27656 * 15 14 13 17 17 H 1.09000 * 108.79378 * 59.57532 * 16 15 14 18 18 C 1.53055 * 108.83984 * 301.18791 * 16 15 14 19 19 H 1.09004 * 109.42558 * 301.07460 * 18 16 15 20 20 C 1.52852 * 108.42148 * 181.78480 * 18 16 15 21 21 C 1.53216 * 108.10638 * 67.55595 * 20 18 16 22 22 C 1.50053 * 110.63960 * 313.82677 * 21 20 18 23 23 O 1.21278 * 117.97674 * 195.70485 * 22 21 20 24 24 N 1.33716 * 124.04622 * 15.70526 * 22 21 20 25 25 C 1.46503 * 118.55928 * 175.79373 * 24 22 21 26 26 C 1.47111 * 110.99915 * 306.75482 * 13 3 2 27 27 H 1.09007 * 109.46568 * 175.11041 * 1 2 3 28 28 H 1.09001 * 109.47245 * 55.11679 * 1 2 3 29 29 H 1.09000 * 109.47166 * 295.11164 * 1 2 3 30 30 H 1.09005 * 109.46778 * 119.99672 * 2 1 3 31 31 H 1.08991 * 109.47403 * 239.99804 * 2 1 3 32 32 H 0.96998 * 120.00554 * 180.02562 * 8 7 5 33 33 H 1.09008 * 109.35384 * 295.33153 * 14 13 3 34 34 H 1.08996 * 109.35726 * 54.90198 * 14 13 3 35 35 H 1.09000 * 109.62256 * 178.00988 * 15 14 13 36 36 H 1.09003 * 109.61453 * 298.55059 * 15 14 13 37 37 H 1.08998 * 109.73547 * 187.20400 * 20 18 16 38 38 H 1.08999 * 109.73373 * 307.85222 * 20 18 16 39 39 H 1.08998 * 109.24698 * 74.13145 * 21 20 18 40 40 H 1.09012 * 109.24142 * 193.53220 * 21 20 18 41 41 H 1.09001 * 109.47067 * 269.98214 * 25 24 22 42 42 H 1.09006 * 109.47003 * 29.98080 * 25 24 22 43 43 H 1.08999 * 109.47456 * 149.97622 * 25 24 22 44 44 H 1.08998 * 109.59177 * 305.34140 * 26 13 3 45 45 H 1.08996 * 109.58859 * 65.78278 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6086 1.9804 -0.8442 5 6 1.6361 2.1181 1.2852 6 1 2.2465 2.0062 2.1691 7 6 0.4873 2.8790 1.3326 8 7 -0.1775 3.1357 0.2273 9 14 -0.1250 3.5452 2.9668 10 1 0.9126 4.4247 3.5628 11 1 -1.3690 4.3261 2.7482 12 1 -0.4050 2.4151 3.8885 13 7 3.5044 1.4442 -0.1149 14 6 3.9263 1.0550 -1.4648 15 6 5.4482 1.1798 -1.5997 16 6 6.1046 0.2921 -0.5446 17 1 5.7886 -0.7384 -0.7067 18 6 5.6331 0.7399 0.8410 19 1 5.9023 1.7849 0.9953 20 6 6.3298 -0.1250 1.8912 21 6 7.8236 0.2149 1.8732 22 6 8.3385 0.2620 0.4645 23 8 9.5391 0.2298 0.2962 24 7 7.5553 0.3373 -0.6166 25 6 8.1874 0.4707 -1.9315 26 6 4.1152 0.5929 0.9178 27 1 -0.3633 -1.0240 -0.0876 28 1 -0.3634 0.5877 -0.8430 29 1 -0.3633 0.4361 0.9305 30 1 1.8933 -0.5138 0.8901 31 1 1.8934 -0.5138 -0.8899 32 1 -0.9856 3.6713 0.2605 33 1 3.6306 0.0226 -1.6522 34 1 3.4445 1.7047 -2.1954 35 1 5.7554 0.8551 -2.5938 36 1 5.7457 2.2166 -1.4422 37 1 5.9158 0.0878 2.8768 38 1 6.1885 -1.1791 1.6525 39 1 7.9769 1.1858 2.3444 40 1 8.3717 -0.5448 2.4308 41 1 8.3168 1.5271 -2.1669 42 1 9.1604 -0.0205 -1.9183 43 1 7.5554 0.0047 -2.6875 44 1 3.7671 0.9057 1.9022 45 1 3.8396 -0.4472 0.7439 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255177852.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:35 Heat of formation + Delta-G solvation = -56.958689 kcal Electronic energy + Delta-G solvation = -23642.775724 eV Core-core repulsion = 20465.783173 eV Total energy + Delta-G solvation = -3176.992551 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.89133 -39.84895 -37.55313 -35.47148 -35.02093 -33.27383 -31.57757 -30.74847 -28.29483 -27.94053 -25.56957 -25.15070 -24.00107 -22.53725 -22.08951 -20.39693 -19.78899 -18.24712 -17.74566 -17.31991 -16.68699 -16.54094 -16.05667 -15.57770 -15.31024 -15.16832 -15.12318 -14.74035 -14.25455 -14.10897 -13.99780 -13.65726 -13.44961 -13.22429 -13.00672 -12.80528 -12.70326 -12.59409 -12.48119 -12.31140 -12.13551 -12.01129 -11.81460 -11.69269 -11.59167 -11.30193 -11.06949 -10.84828 -10.65109 -10.37800 -9.69925 -8.66075 -8.01834 -6.06370 1.46137 1.47892 1.53319 1.57730 2.03372 2.49140 3.15133 3.42707 3.58569 3.63540 3.75977 3.89164 4.14268 4.22583 4.35828 4.44007 4.47663 4.52004 4.55132 4.59172 4.60634 4.74110 4.78224 4.81649 4.85578 4.88842 4.91063 4.95995 5.07002 5.07567 5.17449 5.24049 5.25419 5.34845 5.40119 5.48663 5.54411 5.73463 5.79164 5.84093 6.25852 6.42467 6.72033 6.88914 7.05101 7.10824 7.58157 9.05481 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024687 B = 0.004834 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.928960 B = 5790.429187 C = 6276.006746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.131 4.131 3 C 0.209 3.791 4 H 0.033 0.967 5 C -0.501 4.501 6 H 0.052 0.948 7 C 0.028 3.972 8 N -0.916 5.916 9 Si 0.938 3.062 10 H -0.277 1.277 11 H -0.291 1.291 12 H -0.271 1.271 13 N -0.550 5.550 14 C 0.060 3.940 15 C -0.110 4.110 16 C 0.150 3.850 17 H 0.073 0.927 18 C -0.092 4.092 19 H 0.070 0.930 20 C -0.109 4.109 21 C -0.125 4.125 22 C 0.509 3.491 23 O -0.603 6.603 24 N -0.599 5.599 25 C 0.075 3.925 26 C 0.080 3.920 27 H 0.044 0.956 28 H 0.032 0.968 29 H 0.036 0.964 30 H 0.048 0.952 31 H 0.038 0.962 32 H 0.257 0.743 33 H 0.031 0.969 34 H 0.060 0.940 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.107 0.893 40 H 0.113 0.887 41 H 0.057 0.943 42 H 0.067 0.933 43 H 0.093 0.907 44 H 0.068 0.932 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.677 -7.892 -1.336 13.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.170 4.170 3 C 0.103 3.897 4 H 0.051 0.949 5 C -0.540 4.540 6 H 0.070 0.930 7 C -0.172 4.172 8 N -0.556 5.556 9 Si 0.765 3.235 10 H -0.203 1.203 11 H -0.217 1.217 12 H -0.197 1.197 13 N -0.273 5.273 14 C -0.069 4.069 15 C -0.148 4.148 16 C 0.047 3.953 17 H 0.091 0.909 18 C -0.112 4.112 19 H 0.088 0.912 20 C -0.147 4.147 21 C -0.165 4.165 22 C 0.300 3.700 23 O -0.486 6.486 24 N -0.329 5.329 25 C -0.068 4.068 26 C -0.048 4.048 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.110 0.890 38 H 0.097 0.903 39 H 0.125 0.875 40 H 0.132 0.868 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.111 0.889 44 H 0.086 0.914 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 11.285 -7.333 -1.425 13.533 hybrid contribution -1.072 0.034 0.490 1.179 sum 10.213 -7.299 -0.935 12.588 Atomic orbital electron populations 1.21313 0.96373 0.98323 1.00960 1.22085 0.96397 0.99943 0.98605 1.19323 0.82179 0.91241 0.96993 0.94918 1.21179 1.06845 1.29769 0.96180 0.92986 1.25451 0.97498 0.95930 0.98298 1.70028 1.18141 1.39817 1.27604 0.85935 0.77459 0.78503 0.81623 1.20287 1.21663 1.19659 1.62107 1.10219 1.52683 1.02310 1.21968 0.94808 0.98459 0.91651 1.21816 0.94064 1.00079 0.98863 1.20922 0.78035 0.99764 0.96582 0.90869 1.21400 0.95201 1.00556 0.94020 0.91160 1.21587 0.92770 1.00149 1.00237 1.21621 0.97459 1.05876 0.91514 1.20830 0.85973 0.74794 0.88423 1.90657 1.17207 1.53209 1.87496 1.47397 1.06837 1.71205 1.07472 1.21765 0.99191 1.02099 0.83707 1.21803 0.91881 0.94562 0.96562 0.93737 0.94904 0.94508 0.93334 0.94307 0.93343 0.95073 0.92155 0.88907 0.91778 0.88961 0.90339 0.87506 0.86838 0.92396 0.91427 0.88884 0.91364 0.94916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.69 9.02 71.98 0.65 -4.04 16 2 C -0.13 -5.25 4.56 30.60 0.14 -5.11 16 3 C 0.21 9.52 1.96 44.17 0.09 9.61 16 4 H 0.03 1.75 7.03 -2.39 -0.02 1.73 16 5 C -0.50 -25.33 7.56 25.60 0.19 -25.14 16 6 H 0.05 2.62 6.37 -2.91 -0.02 2.60 16 7 C 0.03 1.44 4.33 84.65 0.37 1.81 16 8 N -0.92 -50.42 12.33 21.45 0.26 -50.15 16 9 Si 0.94 41.98 29.54 68.60 2.03 44.01 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 13 N -0.55 -20.92 4.55 -875.38 -3.98 -24.90 16 14 C 0.06 1.88 5.18 86.44 0.45 2.33 16 15 C -0.11 -2.72 5.04 30.60 0.15 -2.56 16 16 C 0.15 3.57 2.41 45.14 0.11 3.68 16 17 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 18 C -0.09 -2.38 2.06 -10.92 -0.02 -2.41 16 19 H 0.07 2.06 8.11 -2.38 -0.02 2.04 16 20 C -0.11 -2.20 5.46 30.62 0.17 -2.04 16 21 C -0.13 -2.58 5.98 29.72 0.18 -2.40 16 22 C 0.51 13.77 7.47 87.62 0.65 14.42 16 23 O -0.60 -20.45 16.20 -3.02 -0.05 -20.50 16 24 N -0.60 -14.56 3.15 -828.23 -2.61 -17.17 16 25 C 0.07 1.55 9.33 127.77 1.19 2.74 16 26 C 0.08 2.57 3.97 86.16 0.34 2.92 16 27 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 28 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.04 1.69 6.84 -2.39 -0.02 1.68 16 30 H 0.05 1.88 6.75 -2.38 -0.02 1.86 16 31 H 0.04 1.41 6.68 -2.39 -0.02 1.40 16 32 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 33 H 0.03 0.93 6.79 -2.38 -0.02 0.92 16 34 H 0.06 2.04 8.00 -2.39 -0.02 2.02 16 35 H 0.09 1.80 6.77 -2.39 -0.02 1.79 16 36 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.09 1.69 8.14 -2.39 -0.02 1.68 16 38 H 0.08 1.45 8.12 -2.39 -0.02 1.43 16 39 H 0.11 2.07 8.14 -2.39 -0.02 2.06 16 40 H 0.11 2.00 8.14 -2.38 -0.02 1.99 16 41 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.07 1.56 7.15 -2.38 -0.02 1.54 16 43 H 0.09 1.47 6.96 -2.39 -0.02 1.45 16 44 H 0.07 2.45 6.37 -2.39 -0.02 2.43 16 45 H 0.03 1.01 6.69 -2.39 -0.02 0.99 16 Total: -1.00 -61.03 333.51 1.27 -59.76 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.96 Total: 15.13 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: 4.66 Total: -6.19 kcal Atomic # 7 Polarization: -85.89 SS G_CDS: -6.32 Total: -92.22 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.05 Total: -20.50 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -61.03 1.27 -59.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177852.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.801 kcal (2) G-P(sol) polarization free energy of solvation -61.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds