Wall clock time and date at job start Tue Mar 31 2020 01:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46996 * 2 1 4 4 H 1.09006 * 109.47180 * 181.77305 * 3 2 1 5 5 C 1.50700 * 109.47614 * 61.77291 * 3 2 1 6 6 H 1.08003 * 119.99581 * 240.00472 * 5 3 2 7 7 C 1.37873 * 120.00142 * 59.99600 * 5 3 2 8 8 N 1.31525 * 119.99755 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00361 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46938 * 60.00368 * 9 7 5 11 11 H 1.48496 * 109.47350 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47182 * 300.00418 * 9 7 5 13 13 N 1.46898 * 109.46942 * 301.76951 * 3 2 1 14 14 C 1.46698 * 111.00409 * 306.22469 * 13 3 2 15 15 C 1.53288 * 110.17025 * 175.10929 * 14 13 3 16 16 C 1.52735 * 108.45436 * 58.36833 * 15 14 13 17 17 H 1.08994 * 108.92456 * 59.41342 * 16 15 14 18 18 C 1.53058 * 108.83571 * 300.94989 * 16 15 14 19 19 H 1.08991 * 109.43259 * 301.22231 * 18 16 15 20 20 C 1.52848 * 108.41923 * 181.92439 * 18 16 15 21 21 C 1.53219 * 108.14286 * 67.53718 * 20 18 16 22 22 C 1.50081 * 110.62648 * 313.90781 * 21 20 18 23 23 O 1.21286 * 117.95953 * 195.64938 * 22 21 20 24 24 N 1.33717 * 124.06578 * 15.59859 * 22 21 20 25 25 C 1.46496 * 118.56209 * 175.80335 * 24 22 21 26 26 C 1.47108 * 111.00137 * 181.10079 * 13 3 2 27 27 H 1.08998 * 109.46965 * 184.73256 * 1 2 3 28 28 H 1.09000 * 109.47304 * 304.73381 * 1 2 3 29 29 H 1.09001 * 109.46549 * 64.73422 * 1 2 3 30 30 H 1.08994 * 109.47405 * 239.99996 * 2 1 3 31 31 H 1.09002 * 109.46772 * 119.99180 * 2 1 3 32 32 H 0.96998 * 119.99823 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.35515 * 295.32878 * 14 13 3 34 34 H 1.09004 * 109.35134 * 54.89539 * 14 13 3 35 35 H 1.08997 * 109.61997 * 178.00872 * 15 14 13 36 36 H 1.08994 * 109.61802 * 298.56378 * 15 14 13 37 37 H 1.09004 * 109.73943 * 187.21539 * 20 18 16 38 38 H 1.09003 * 109.74432 * 307.86212 * 20 18 16 39 39 H 1.09004 * 109.23948 * 74.16019 * 21 20 18 40 40 H 1.09004 * 109.24515 * 193.55939 * 21 20 18 41 41 H 1.09000 * 109.47690 * 270.02496 * 25 24 22 42 42 H 1.09004 * 109.47087 * 30.02686 * 25 24 22 43 43 H 1.08995 * 109.46917 * 150.01907 * 25 24 22 44 44 H 1.08999 * 109.58754 * 65.78137 * 26 13 3 45 45 H 1.09000 * 109.70890 * 305.42092 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1296 1.4427 -0.0318 5 6 1.5739 2.1402 1.2518 6 1 0.9505 3.0192 1.1798 7 6 1.9433 1.6564 2.4889 8 7 2.7028 0.5862 2.5765 9 14 1.3650 2.5208 4.0406 10 1 -0.1194 2.5200 4.0837 11 1 1.8956 1.8088 5.2308 12 1 1.8594 3.9210 4.0408 13 7 1.5157 2.1472 -1.1775 14 6 1.8253 1.4143 -2.4100 15 6 1.1670 2.1003 -3.6124 16 6 1.6778 3.5377 -3.6883 17 1 2.7620 3.5222 -3.7990 18 6 1.3257 4.2568 -2.3839 19 1 0.2457 4.2368 -2.2389 20 6 1.7979 5.7067 -2.4890 21 6 0.9451 6.4105 -3.5496 22 6 0.8220 5.5591 -4.7794 23 8 0.4311 6.0865 -5.7993 24 7 1.1174 4.2557 -4.8207 25 6 0.8646 3.5191 -6.0615 26 6 2.0074 3.5329 -1.2249 27 1 -0.3633 -1.0241 0.0848 28 1 -0.3634 0.5855 0.8445 29 1 -0.3632 0.4386 -0.9294 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 2.9629 0.2460 3.4468 33 1 2.9055 1.3904 -2.5544 34 1 1.4515 0.3938 -2.3269 35 1 1.4316 1.5693 -4.5267 36 1 0.0844 2.1003 -3.4862 37 1 1.6744 6.2048 -1.5273 38 1 2.8469 5.7318 -2.7842 39 1 -0.0486 6.6001 -3.1436 40 1 1.4115 7.3596 -3.8139 41 1 -0.1461 3.1116 -6.0428 42 1 0.9689 4.1932 -6.9118 43 1 1.5832 2.7047 -6.1533 44 1 3.0865 3.5327 -1.3783 45 1 1.7714 4.0389 -0.2887 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255177853.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:38 Heat of formation + Delta-G solvation = -53.447336 kcal Electronic energy + Delta-G solvation = -23715.181815 eV Core-core repulsion = 20538.341528 eV Total energy + Delta-G solvation = -3176.840287 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.88415 -39.81274 -37.58247 -35.53743 -35.00397 -33.16904 -31.81235 -30.46678 -28.34402 -27.96110 -25.75785 -25.09658 -23.97358 -22.64154 -21.67168 -20.50662 -19.75199 -18.08159 -17.81791 -17.34058 -16.81256 -16.63077 -16.02467 -15.85744 -15.35133 -15.09593 -14.98225 -14.52128 -14.33294 -14.05486 -13.82329 -13.69083 -13.55356 -13.35046 -13.01663 -12.81884 -12.65329 -12.50110 -12.44648 -12.29843 -12.13740 -11.97768 -11.74285 -11.64041 -11.47440 -11.40827 -11.06609 -10.78052 -10.59662 -10.36773 -9.69912 -8.80317 -8.02838 -6.11902 1.46255 1.47747 1.53904 1.57949 2.03077 2.47181 3.21503 3.30361 3.56809 3.61049 3.74425 3.87813 4.14351 4.22467 4.36111 4.46798 4.48464 4.55742 4.55810 4.62503 4.69374 4.76885 4.79954 4.82300 4.89030 4.90305 4.95299 4.96538 5.07033 5.12396 5.20551 5.25151 5.32323 5.40277 5.46495 5.54126 5.57970 5.79273 5.84443 5.94500 6.38892 6.42401 6.49378 6.84044 7.01276 7.10956 7.55876 9.02074 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024349 B = 0.005059 C = 0.004425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.647064 B = 5533.594226 C = 6326.800703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.110 4.110 3 C 0.226 3.774 4 H -0.042 1.042 5 C -0.499 4.499 6 H 0.058 0.942 7 C 0.016 3.984 8 N -0.920 5.920 9 Si 0.947 3.053 10 H -0.274 1.274 11 H -0.291 1.291 12 H -0.272 1.272 13 N -0.536 5.536 14 C 0.055 3.945 15 C -0.108 4.108 16 C 0.149 3.851 17 H 0.067 0.933 18 C -0.088 4.088 19 H 0.078 0.922 20 C -0.111 4.111 21 C -0.124 4.124 22 C 0.510 3.490 23 O -0.602 6.602 24 N -0.598 5.598 25 C 0.075 3.925 26 C 0.081 3.919 27 H 0.033 0.967 28 H 0.035 0.965 29 H 0.054 0.946 30 H 0.031 0.969 31 H 0.060 0.940 32 H 0.258 0.742 33 H 0.017 0.983 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.092 0.908 44 H 0.016 0.984 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.808 5.092 -11.838 13.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.149 4.149 3 C 0.119 3.881 4 H -0.025 1.025 5 C -0.537 4.537 6 H 0.076 0.924 7 C -0.183 4.183 8 N -0.560 5.560 9 Si 0.774 3.226 10 H -0.199 1.199 11 H -0.217 1.217 12 H -0.197 1.197 13 N -0.261 5.261 14 C -0.074 4.074 15 C -0.146 4.146 16 C 0.045 3.955 17 H 0.085 0.915 18 C -0.108 4.108 19 H 0.096 0.904 20 C -0.149 4.149 21 C -0.164 4.164 22 C 0.300 3.700 23 O -0.485 6.485 24 N -0.329 5.329 25 C -0.067 4.067 26 C -0.047 4.047 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.035 0.965 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.092 0.908 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.110 0.890 44 H 0.034 0.966 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.411 5.251 -12.177 13.478 hybrid contribution 0.879 -0.011 1.139 1.439 sum -1.531 5.240 -11.038 12.314 Atomic orbital electron populations 1.21329 0.95748 0.98439 1.01038 1.21492 0.96354 0.97599 0.99420 1.18987 0.90103 0.91501 0.87459 1.02489 1.21236 1.30262 1.11665 0.90569 0.92362 1.25557 0.95487 0.95683 1.01564 1.70003 1.37561 1.23841 1.24626 0.85773 0.78637 0.78770 0.79411 1.19945 1.21677 1.19745 1.61767 1.60338 1.01837 1.02159 1.22083 0.97008 0.98590 0.89671 1.21820 1.01353 0.93435 0.98026 1.20952 0.97203 0.92542 0.84777 0.91462 1.21365 1.01482 0.94886 0.93022 0.90388 1.21590 0.99700 0.93815 0.99802 1.21617 1.03861 0.98867 0.92015 1.20823 0.75963 0.82370 0.90845 1.90661 1.49552 1.72094 1.36219 1.47388 1.62445 1.08832 1.14190 1.21768 1.02017 0.96938 0.86021 1.21785 0.95296 0.89697 0.97971 0.94837 0.94599 0.92745 0.95029 0.92147 0.93287 0.96473 0.90312 0.88887 0.90960 0.88988 0.90790 0.87244 0.86962 0.92096 0.91524 0.88991 0.96551 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.39 9.41 71.98 0.68 -3.71 16 2 C -0.11 -4.95 4.95 30.60 0.15 -4.80 16 3 C 0.23 10.55 1.78 44.17 0.08 10.62 16 4 H -0.04 -2.27 8.14 -2.38 -0.02 -2.29 16 5 C -0.50 -25.32 6.61 25.60 0.17 -25.15 16 6 H 0.06 2.94 6.79 -2.91 -0.02 2.92 16 7 C 0.02 0.81 5.30 84.65 0.45 1.26 16 8 N -0.92 -50.96 11.31 21.45 0.24 -50.72 16 9 Si 0.95 42.01 29.54 68.60 2.03 44.04 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 13 N -0.54 -20.01 3.77 -875.35 -3.30 -23.31 16 14 C 0.06 1.70 4.81 86.44 0.42 2.11 16 15 C -0.11 -2.55 5.04 30.60 0.15 -2.40 16 16 C 0.15 3.53 2.41 45.15 0.11 3.64 16 17 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 18 C -0.09 -2.27 2.07 -10.92 -0.02 -2.29 16 19 H 0.08 2.17 8.11 -2.39 -0.02 2.15 16 20 C -0.11 -2.31 5.46 30.62 0.17 -2.14 16 21 C -0.12 -2.56 5.99 29.73 0.18 -2.38 16 22 C 0.51 13.65 7.47 87.63 0.65 14.30 16 23 O -0.60 -20.26 16.20 -3.05 -0.05 -20.31 16 24 N -0.60 -14.34 3.15 -828.17 -2.61 -16.95 16 25 C 0.07 1.52 9.32 127.77 1.19 2.71 16 26 C 0.08 2.72 4.69 86.17 0.40 3.12 16 27 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.03 1.61 7.12 -2.39 -0.02 1.59 16 29 H 0.05 2.02 7.21 -2.39 -0.02 2.00 16 30 H 0.03 1.28 6.32 -2.39 -0.02 1.26 16 31 H 0.06 3.13 6.03 -2.39 -0.01 3.12 16 32 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 33 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.08 2.47 5.57 -2.38 -0.01 2.46 16 35 H 0.09 1.72 6.76 -2.39 -0.02 1.71 16 36 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.07 1.47 8.12 -2.39 -0.02 1.45 16 39 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.07 1.51 7.15 -2.38 -0.02 1.49 16 43 H 0.09 1.42 6.96 -2.39 -0.02 1.41 16 44 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.07 2.71 6.41 -2.39 -0.02 2.69 16 Total: -1.00 -61.26 332.86 2.04 -59.21 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.96 Total: 13.14 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: 4.78 Total: -5.10 kcal Atomic # 7 Polarization: -85.32 SS G_CDS: -5.67 Total: -90.99 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.05 Total: -20.31 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -61.26 2.04 -59.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177853.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.767 kcal (2) G-P(sol) polarization free energy of solvation -61.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds