Wall clock time and date at job start Tue Mar 31 2020 01:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47095 * 2 1 4 4 H 1.08996 * 109.47694 * 302.09732 * 3 2 1 5 5 C 1.50704 * 109.46847 * 182.09553 * 3 2 1 6 6 H 1.08004 * 120.00147 * 239.99915 * 5 3 2 7 7 C 1.37877 * 119.99841 * 60.00302 * 5 3 2 8 8 N 1.31515 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99975 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.47102 * 269.99816 * 9 7 5 11 11 H 1.48493 * 109.47288 * 29.99849 * 9 7 5 12 12 H 1.48501 * 109.47148 * 150.00263 * 9 7 5 13 13 N 1.46901 * 109.47264 * 62.09989 * 3 2 1 14 14 C 1.46913 * 111.00287 * 189.57383 * 13 3 2 15 15 C 1.53018 * 109.23734 * 173.47004 * 14 13 3 16 16 C 1.52720 * 109.64039 * 58.92519 * 15 14 13 17 17 H 1.09001 * 108.63207 * 185.03703 * 16 15 14 18 18 C 1.52778 * 110.18492 * 303.92642 * 16 15 14 19 19 H 1.08999 * 109.74310 * 293.75475 * 18 16 15 20 20 C 1.53512 * 108.39794 * 173.91628 * 18 16 15 21 21 C 1.53065 * 108.35199 * 292.49885 * 20 18 16 22 22 C 1.50167 * 110.03129 * 48.89658 * 21 20 18 23 23 O 1.21281 * 118.28542 * 162.46200 * 22 21 20 24 24 N 1.32281 * 123.03274 * 341.49657 * 22 21 20 25 25 C 1.46491 * 117.11388 * 183.20311 * 24 22 21 26 26 C 1.46775 * 110.99926 * 65.64008 * 13 3 2 27 27 H 1.08996 * 109.47044 * 294.41822 * 1 2 3 28 28 H 1.09003 * 109.46548 * 54.41206 * 1 2 3 29 29 H 1.08995 * 109.47256 * 174.40923 * 1 2 3 30 30 H 1.08997 * 109.46811 * 239.99892 * 2 1 3 31 31 H 1.09005 * 109.46553 * 120.00243 * 2 1 3 32 32 H 0.97003 * 119.99532 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.51434 * 293.40582 * 14 13 3 34 34 H 1.09009 * 109.50310 * 53.54768 * 14 13 3 35 35 H 1.09001 * 109.44508 * 178.97294 * 15 14 13 36 36 H 1.08995 * 109.44610 * 298.90541 * 15 14 13 37 37 H 1.09002 * 109.68600 * 52.21233 * 20 18 16 38 38 H 1.08996 * 109.69112 * 172.74376 * 20 18 16 39 39 H 1.09000 * 109.37711 * 169.06911 * 21 20 18 40 40 H 1.08998 * 109.37288 * 288.83848 * 21 20 18 41 41 H 1.08998 * 109.47117 * 208.34430 * 25 24 22 42 42 H 1.08998 * 109.47384 * 328.34271 * 25 24 22 43 43 H 1.09007 * 109.47310 * 88.34753 * 25 24 22 44 44 H 1.09001 * 109.41301 * 306.22376 * 26 13 3 45 45 H 1.08991 * 109.41788 * 66.02599 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6464 1.9671 -0.8705 5 6 3.5462 1.4427 -0.0520 6 1 4.1139 1.9006 0.7446 7 6 4.1993 0.8585 -1.1164 8 7 3.5079 0.3006 -2.0861 9 14 6.0662 0.8594 -1.1812 10 1 6.5365 2.0805 -1.8835 11 1 6.6095 0.8429 0.2007 12 1 6.5367 -0.3443 -1.9126 13 7 1.5922 2.1202 1.2240 14 6 1.8656 3.5621 1.1576 15 6 1.2406 4.2503 2.3730 16 6 1.8226 3.6571 3.6543 17 1 1.3031 4.0936 4.5074 18 6 1.6130 2.1440 3.6774 19 1 0.5484 1.9207 3.7467 20 6 2.3434 1.5723 4.9006 21 6 3.8495 1.7394 4.6842 22 6 4.1548 3.1466 4.2580 23 8 5.2975 3.5414 4.3553 24 7 3.2401 3.9655 3.7657 25 6 3.6946 5.2863 3.3242 26 6 2.2113 1.5221 2.4129 27 1 -0.3633 0.4248 0.9357 28 1 -0.3632 0.5981 -0.8358 29 1 -0.3633 -1.0227 -0.1001 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.9675 -0.1107 -2.8348 33 1 2.9427 3.7290 1.1586 34 1 1.4338 3.9727 0.2447 35 1 1.4570 5.3180 2.3366 36 1 0.1614 4.0982 2.3610 37 1 2.0388 2.1136 5.7963 38 1 2.1028 0.5149 5.0110 39 1 4.3748 1.5210 5.6140 40 1 4.1824 1.0484 3.9098 41 1 2.8793 6.0029 3.4232 42 1 4.5356 5.6056 3.9397 43 1 4.0071 5.2332 2.2813 44 1 2.0272 0.4478 2.4155 45 1 3.2856 1.7047 2.3927 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255177855.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:44 Heat of formation + Delta-G solvation = -32.796785 kcal Electronic energy + Delta-G solvation = -24596.561253 eV Core-core repulsion = 21420.616441 eV Total energy + Delta-G solvation = -3175.944812 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.99466 -38.12502 -35.92071 -34.48919 -33.14360 -31.61702 -30.17059 -28.94053 -27.01001 -26.52695 -24.48697 -23.86299 -22.44871 -21.22140 -20.50312 -19.18077 -17.50142 -16.55020 -16.30611 -15.93779 -15.63064 -15.30331 -14.73011 -14.35410 -13.69079 -13.50735 -13.40467 -13.06928 -12.92541 -12.82045 -12.53351 -12.30883 -12.01981 -11.77035 -11.55995 -11.44814 -11.24781 -11.11326 -10.86690 -10.77236 -10.69055 -10.45451 -10.24361 -10.12863 -9.84407 -9.67407 -9.42902 -9.26889 -9.09067 -8.45632 -8.37535 -7.14200 -6.00509 -4.13503 2.95324 3.27257 3.28877 3.34647 3.40830 4.40062 4.71764 4.76738 4.80690 4.88901 5.08666 5.24698 5.30840 5.36451 5.44713 5.61814 5.71675 5.72007 5.83365 5.91191 5.93623 5.98561 6.05733 6.10761 6.15603 6.25481 6.29173 6.42371 6.45980 6.57791 6.62199 6.66686 6.74295 6.82999 7.07670 7.15714 7.32738 7.57908 7.73932 7.74654 7.94918 8.13203 8.28789 8.44292 8.45435 8.96390 9.54880 10.98678 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015288 B = 0.007972 C = 0.006523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.105989 B = 3511.237924 C = 4291.433935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 C 0.216 3.784 4 H 0.037 0.963 5 C -0.542 4.542 6 H 0.054 0.946 7 C 0.071 3.929 8 N -0.885 5.885 9 Si 0.882 3.118 10 H -0.281 1.281 11 H -0.274 1.274 12 H -0.286 1.286 13 N -0.531 5.531 14 C 0.063 3.937 15 C -0.126 4.126 16 C 0.152 3.848 17 H 0.062 0.938 18 C -0.099 4.099 19 H 0.093 0.907 20 C -0.116 4.116 21 C -0.140 4.140 22 C 0.521 3.479 23 O -0.567 6.567 24 N -0.589 5.589 25 C 0.074 3.926 26 C 0.064 3.936 27 H 0.046 0.954 28 H 0.038 0.962 29 H 0.024 0.976 30 H 0.091 0.909 31 H 0.032 0.968 32 H 0.261 0.739 33 H 0.038 0.962 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.106 0.894 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.058 0.942 44 H 0.073 0.927 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.505 4.772 11.296 13.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.148 4.148 3 C 0.110 3.890 4 H 0.055 0.945 5 C -0.581 4.581 6 H 0.072 0.928 7 C -0.132 4.132 8 N -0.523 5.523 9 Si 0.710 3.290 10 H -0.207 1.207 11 H -0.199 1.199 12 H -0.211 1.211 13 N -0.255 5.255 14 C -0.066 4.066 15 C -0.164 4.164 16 C 0.048 3.952 17 H 0.080 0.920 18 C -0.118 4.118 19 H 0.111 0.889 20 C -0.154 4.154 21 C -0.179 4.179 22 C 0.309 3.691 23 O -0.447 6.447 24 N -0.321 5.321 25 C -0.068 4.068 26 C -0.064 4.064 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.043 0.957 30 H 0.109 0.891 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.110 0.890 40 H 0.124 0.876 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.091 0.909 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.428 4.786 11.190 13.764 hybrid contribution 1.936 0.072 -0.311 1.962 sum -4.492 4.858 10.879 12.733 Atomic orbital electron populations 1.21685 0.98811 0.98292 1.00511 1.21592 0.92166 0.99143 1.01936 1.19258 0.92571 0.90947 0.86257 0.94486 1.21708 0.92645 1.37277 1.06487 0.92770 1.24870 0.97813 0.94987 0.95507 1.69870 1.34963 1.37538 1.09951 0.86748 0.86433 0.77549 0.78280 1.20729 1.19917 1.21139 1.62466 1.57549 1.01506 1.03942 1.21837 0.98624 0.90136 0.95978 1.21933 1.01104 0.99033 0.94369 1.20850 0.79871 0.96351 0.98094 0.91993 1.21624 1.01303 0.93018 0.95872 0.88904 1.21707 0.93778 1.02150 0.97804 1.21719 0.98060 0.94270 1.03872 1.19753 0.84695 0.87725 0.76891 1.90684 1.20468 1.76614 1.56944 1.46867 1.08329 1.15686 1.61188 1.21695 1.00385 0.84066 1.00704 1.22010 0.97135 0.98810 0.88471 0.93528 0.94239 0.95699 0.89074 0.94927 0.92913 0.94410 0.91751 0.91700 0.90137 0.91659 0.90462 0.88962 0.87639 0.91453 0.90724 0.92311 0.90911 0.93832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.70 37.16 0.36 -2.25 16 2 C -0.11 -2.49 5.08 -26.73 -0.14 -2.63 16 3 C 0.22 5.06 1.74 -68.86 -0.12 4.94 16 4 H 0.04 0.98 7.99 -51.93 -0.41 0.56 16 5 C -0.54 -14.20 7.24 -34.44 -0.25 -14.45 16 6 H 0.05 1.48 5.83 -52.48 -0.31 1.17 16 7 C 0.07 1.92 5.30 -17.82 -0.09 1.82 16 8 N -0.88 -24.55 11.30 55.43 0.63 -23.93 16 9 Si 0.88 21.54 29.54 -169.99 -5.02 16.52 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 N -0.53 -10.24 4.05 -228.06 -0.92 -11.17 16 14 C 0.06 1.12 5.04 -3.81 -0.02 1.10 16 15 C -0.13 -1.68 5.19 -26.87 -0.14 -1.82 16 16 C 0.15 1.99 2.70 -68.73 -0.19 1.81 16 17 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 18 C -0.10 -1.34 2.83 -90.42 -0.26 -1.59 16 19 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 20 C -0.12 -1.37 5.66 -26.43 -0.15 -1.52 16 21 C -0.14 -2.00 5.38 -28.11 -0.15 -2.16 16 22 C 0.52 9.02 6.62 -12.34 -0.08 8.94 16 23 O -0.57 -11.86 16.13 5.56 0.09 -11.77 16 24 N -0.59 -8.95 2.56 -175.93 -0.45 -9.41 16 25 C 0.07 1.04 8.81 59.84 0.53 1.57 16 26 C 0.06 1.14 3.45 -3.85 -0.01 1.13 16 27 H 0.05 0.84 7.83 -51.93 -0.41 0.43 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 2.35 6.02 -51.93 -0.31 2.03 16 31 H 0.03 0.73 6.32 -51.93 -0.33 0.40 16 32 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.04 0.77 5.96 -51.93 -0.31 0.46 16 34 H 0.06 1.17 8.01 -51.92 -0.42 0.76 16 35 H 0.06 0.76 6.38 -51.93 -0.33 0.43 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.11 1.67 6.80 -51.93 -0.35 1.32 16 41 H 0.07 0.73 6.84 -51.93 -0.36 0.38 16 42 H 0.07 1.10 7.13 -51.93 -0.37 0.73 16 43 H 0.06 0.90 7.34 -51.92 -0.38 0.52 16 44 H 0.07 1.35 6.15 -51.93 -0.32 1.03 16 45 H 0.04 0.90 3.71 -51.93 -0.19 0.71 16 LS Contribution 325.37 15.07 4.90 4.90 Total: -1.00 -29.67 325.37 -8.79 -38.47 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -7.31 Total: 1.49 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -0.71 Total: -5.11 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: -0.75 Total: -44.50 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.67 -8.79 -38.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177855.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.668 kcal (2) G-P(sol) polarization free energy of solvation -29.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds