Wall clock time and date at job start Tue Mar 31 2020 01:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47095 * 2 1 4 4 H 1.08996 * 109.47694 * 302.09732 * 3 2 1 5 5 C 1.50704 * 109.46847 * 182.09553 * 3 2 1 6 6 H 1.08004 * 120.00147 * 239.99915 * 5 3 2 7 7 C 1.37877 * 119.99841 * 60.00302 * 5 3 2 8 8 N 1.31515 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99975 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.47102 * 269.99816 * 9 7 5 11 11 H 1.48493 * 109.47288 * 29.99849 * 9 7 5 12 12 H 1.48501 * 109.47148 * 150.00263 * 9 7 5 13 13 N 1.46901 * 109.47264 * 62.09989 * 3 2 1 14 14 C 1.46913 * 111.00287 * 189.57383 * 13 3 2 15 15 C 1.53018 * 109.23734 * 173.47004 * 14 13 3 16 16 C 1.52720 * 109.64039 * 58.92519 * 15 14 13 17 17 H 1.09001 * 108.63207 * 185.03703 * 16 15 14 18 18 C 1.52778 * 110.18492 * 303.92642 * 16 15 14 19 19 H 1.08999 * 109.74310 * 293.75475 * 18 16 15 20 20 C 1.53512 * 108.39794 * 173.91628 * 18 16 15 21 21 C 1.53065 * 108.35199 * 292.49885 * 20 18 16 22 22 C 1.50167 * 110.03129 * 48.89658 * 21 20 18 23 23 O 1.21281 * 118.28542 * 162.46200 * 22 21 20 24 24 N 1.32281 * 123.03274 * 341.49657 * 22 21 20 25 25 C 1.46491 * 117.11388 * 183.20311 * 24 22 21 26 26 C 1.46775 * 110.99926 * 65.64008 * 13 3 2 27 27 H 1.08996 * 109.47044 * 294.41822 * 1 2 3 28 28 H 1.09003 * 109.46548 * 54.41206 * 1 2 3 29 29 H 1.08995 * 109.47256 * 174.40923 * 1 2 3 30 30 H 1.08997 * 109.46811 * 239.99892 * 2 1 3 31 31 H 1.09005 * 109.46553 * 120.00243 * 2 1 3 32 32 H 0.97003 * 119.99532 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.51434 * 293.40582 * 14 13 3 34 34 H 1.09009 * 109.50310 * 53.54768 * 14 13 3 35 35 H 1.09001 * 109.44508 * 178.97294 * 15 14 13 36 36 H 1.08995 * 109.44610 * 298.90541 * 15 14 13 37 37 H 1.09002 * 109.68600 * 52.21233 * 20 18 16 38 38 H 1.08996 * 109.69112 * 172.74376 * 20 18 16 39 39 H 1.09000 * 109.37711 * 169.06911 * 21 20 18 40 40 H 1.08998 * 109.37288 * 288.83848 * 21 20 18 41 41 H 1.08998 * 109.47117 * 208.34430 * 25 24 22 42 42 H 1.08998 * 109.47384 * 328.34271 * 25 24 22 43 43 H 1.09007 * 109.47310 * 88.34753 * 25 24 22 44 44 H 1.09001 * 109.41301 * 306.22376 * 26 13 3 45 45 H 1.08991 * 109.41788 * 66.02599 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6464 1.9671 -0.8705 5 6 3.5462 1.4427 -0.0520 6 1 4.1139 1.9006 0.7446 7 6 4.1993 0.8585 -1.1164 8 7 3.5079 0.3006 -2.0861 9 14 6.0662 0.8594 -1.1812 10 1 6.5365 2.0805 -1.8835 11 1 6.6095 0.8429 0.2007 12 1 6.5367 -0.3443 -1.9126 13 7 1.5922 2.1202 1.2240 14 6 1.8656 3.5621 1.1576 15 6 1.2406 4.2503 2.3730 16 6 1.8226 3.6571 3.6543 17 1 1.3031 4.0936 4.5074 18 6 1.6130 2.1440 3.6774 19 1 0.5484 1.9207 3.7467 20 6 2.3434 1.5723 4.9006 21 6 3.8495 1.7394 4.6842 22 6 4.1548 3.1466 4.2580 23 8 5.2975 3.5414 4.3553 24 7 3.2401 3.9655 3.7657 25 6 3.6946 5.2863 3.3242 26 6 2.2113 1.5221 2.4129 27 1 -0.3633 0.4248 0.9357 28 1 -0.3632 0.5981 -0.8358 29 1 -0.3633 -1.0227 -0.1001 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.9675 -0.1107 -2.8348 33 1 2.9427 3.7290 1.1586 34 1 1.4338 3.9727 0.2447 35 1 1.4570 5.3180 2.3366 36 1 0.1614 4.0982 2.3610 37 1 2.0388 2.1136 5.7963 38 1 2.1028 0.5149 5.0110 39 1 4.3748 1.5210 5.6140 40 1 4.1824 1.0484 3.9098 41 1 2.8793 6.0029 3.4232 42 1 4.5356 5.6056 3.9397 43 1 4.0071 5.2332 2.2813 44 1 2.0272 0.4478 2.4155 45 1 3.2856 1.7047 2.3927 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255177855.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:44 Heat of formation + Delta-G solvation = -51.607031 kcal Electronic energy + Delta-G solvation = -24597.376926 eV Core-core repulsion = 21420.616441 eV Total energy + Delta-G solvation = -3176.760485 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.23162 -39.59678 -37.47964 -35.61303 -34.84404 -33.44525 -31.59787 -30.20367 -28.47899 -28.05814 -25.90129 -25.36621 -24.00576 -22.40120 -21.84879 -20.97653 -18.96094 -18.13379 -17.60942 -17.17349 -17.06285 -16.98195 -16.15703 -16.07435 -15.07060 -14.85007 -14.77871 -14.61645 -14.45741 -14.13256 -13.83872 -13.58229 -13.40299 -13.17843 -13.15199 -12.97989 -12.82102 -12.80628 -12.50465 -12.33285 -12.06889 -11.99490 -11.68626 -11.55344 -11.51226 -11.35070 -11.04857 -10.87803 -10.60502 -10.44517 -9.67574 -8.88279 -8.07041 -6.28471 1.26001 1.30118 1.38603 1.63351 2.14365 2.33180 3.10196 3.41011 3.61262 3.69740 3.75777 3.95441 4.23200 4.27902 4.38477 4.46326 4.51301 4.57900 4.59858 4.65449 4.74547 4.78908 4.83010 4.88311 4.93895 4.95582 4.98227 5.03447 5.09672 5.22149 5.24409 5.32806 5.34209 5.39611 5.47959 5.50839 5.56849 5.65315 5.81597 6.10099 6.20269 6.38147 6.52200 6.72179 6.95043 7.17100 7.42107 8.86250 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015288 B = 0.007972 C = 0.006523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.105989 B = 3511.237924 C = 4291.433935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.104 4.104 3 C 0.223 3.777 4 H 0.002 0.998 5 C -0.543 4.543 6 H 0.035 0.965 7 C 0.029 3.971 8 N -0.905 5.905 9 Si 0.929 3.071 10 H -0.281 1.281 11 H -0.284 1.284 12 H -0.276 1.276 13 N -0.520 5.520 14 C 0.062 3.938 15 C -0.115 4.115 16 C 0.146 3.854 17 H 0.107 0.893 18 C -0.093 4.093 19 H 0.121 0.879 20 C -0.105 4.105 21 C -0.138 4.138 22 C 0.508 3.492 23 O -0.617 6.617 24 N -0.587 5.587 25 C 0.074 3.926 26 C 0.068 3.932 27 H 0.063 0.937 28 H 0.031 0.969 29 H 0.042 0.958 30 H 0.057 0.943 31 H 0.031 0.969 32 H 0.262 0.738 33 H 0.002 0.998 34 H 0.053 0.947 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.062 0.938 43 H 0.035 0.965 44 H 0.062 0.938 45 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.931 5.270 13.574 17.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.142 4.142 3 C 0.115 3.885 4 H 0.020 0.980 5 C -0.582 4.582 6 H 0.054 0.946 7 C -0.171 4.171 8 N -0.544 5.544 9 Si 0.756 3.244 10 H -0.207 1.207 11 H -0.210 1.210 12 H -0.201 1.201 13 N -0.243 5.243 14 C -0.067 4.067 15 C -0.153 4.153 16 C 0.044 3.956 17 H 0.124 0.876 18 C -0.112 4.112 19 H 0.139 0.861 20 C -0.143 4.143 21 C -0.178 4.178 22 C 0.298 3.702 23 O -0.501 6.501 24 N -0.317 5.317 25 C -0.069 4.069 26 C -0.060 4.060 27 H 0.082 0.918 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.020 0.980 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.123 0.877 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.125 0.875 40 H 0.099 0.901 41 H 0.126 0.874 42 H 0.081 0.919 43 H 0.054 0.946 44 H 0.081 0.919 45 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -8.893 5.290 13.464 16.981 hybrid contribution 2.715 -0.050 -1.066 2.917 sum -6.178 5.240 12.398 14.810 Atomic orbital electron populations 1.21532 0.95741 0.99524 1.01114 1.21410 0.94820 0.97863 1.00151 1.19005 0.90638 0.91654 0.87191 0.97980 1.21897 0.94407 1.36307 1.05616 0.94641 1.25422 1.00747 0.95271 0.95647 1.69968 1.35884 1.38251 1.10300 0.86017 0.83052 0.77745 0.77538 1.20679 1.20994 1.20097 1.62455 1.56802 1.02152 1.02854 1.21883 0.96848 0.89594 0.98335 1.21903 1.01934 0.99641 0.91789 1.21162 0.78655 0.96343 0.99472 0.87572 1.21636 1.02639 0.93078 0.93825 0.86148 1.21713 0.90939 1.03716 0.97920 1.21719 1.00705 0.91769 1.03599 1.20336 0.84336 0.88872 0.76701 1.90650 1.22494 1.77706 1.59245 1.47035 1.09188 1.15667 1.59789 1.21739 1.01628 0.84572 0.98957 1.21996 0.95440 0.98647 0.89946 0.91750 0.94938 0.93879 0.92456 0.95047 0.92899 0.97993 0.92892 0.89516 0.87749 0.88580 0.88717 0.87496 0.90052 0.87446 0.91902 0.94591 0.91929 0.97319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.51 9.70 71.98 0.70 -3.81 16 2 C -0.10 -4.76 5.08 30.59 0.16 -4.60 16 3 C 0.22 10.73 1.74 44.17 0.08 10.81 16 4 H 0.00 0.12 7.99 -2.39 -0.02 0.11 16 5 C -0.54 -29.67 7.24 25.60 0.19 -29.49 16 6 H 0.04 2.05 5.83 -2.91 -0.02 2.03 16 7 C 0.03 1.64 5.30 84.65 0.45 2.09 16 8 N -0.90 -51.75 11.30 21.45 0.24 -51.51 16 9 Si 0.93 45.73 29.54 68.60 2.03 47.76 16 10 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 11 H -0.28 -14.35 7.11 99.48 0.71 -13.65 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 13 N -0.52 -19.83 4.05 -875.46 -3.54 -23.37 16 14 C 0.06 2.19 5.04 86.31 0.44 2.63 16 15 C -0.11 -2.65 5.19 30.51 0.16 -2.49 16 16 C 0.15 3.23 2.70 45.01 0.12 3.35 16 17 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 18 C -0.09 -2.16 2.83 -10.67 -0.03 -2.19 16 19 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 20 C -0.11 -2.07 5.66 30.79 0.17 -1.89 16 21 C -0.14 -3.83 5.38 29.70 0.16 -3.67 16 22 C 0.51 17.46 6.62 87.87 0.58 18.04 16 23 O -0.62 -26.59 16.13 -3.03 -0.05 -26.64 16 24 N -0.59 -16.87 2.56 -830.28 -2.13 -19.00 16 25 C 0.07 1.99 8.81 127.77 1.13 3.12 16 26 C 0.07 2.37 3.45 86.36 0.30 2.66 16 27 H 0.06 2.14 7.83 -2.39 -0.02 2.12 16 28 H 0.03 1.22 8.14 -2.39 -0.02 1.21 16 29 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 30 H 0.06 3.03 6.02 -2.39 -0.01 3.01 16 31 H 0.03 1.41 6.32 -2.38 -0.02 1.39 16 32 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 33 H 0.00 0.07 5.96 -2.39 -0.01 0.06 16 34 H 0.05 1.95 8.01 -2.38 -0.02 1.93 16 35 H 0.09 1.67 6.38 -2.39 -0.02 1.65 16 36 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.10 1.41 8.12 -2.39 -0.02 1.39 16 38 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 40 H 0.08 2.65 6.80 -2.39 -0.02 2.63 16 41 H 0.11 1.98 6.84 -2.39 -0.02 1.96 16 42 H 0.06 1.85 7.13 -2.39 -0.02 1.83 16 43 H 0.04 1.12 7.34 -2.38 -0.02 1.11 16 44 H 0.06 2.28 6.15 -2.39 -0.01 2.26 16 45 H 0.01 0.37 3.71 -2.39 -0.01 0.36 16 Total: -1.00 -69.24 325.37 2.11 -67.13 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: 0.97 Total: 11.06 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: 4.59 Total: -5.44 kcal Atomic # 7 Polarization: -88.45 SS G_CDS: -5.43 Total: -93.88 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.05 Total: -26.64 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -69.24 2.11 -67.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177855.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.527 kcal (2) G-P(sol) polarization free energy of solvation -69.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds