Wall clock time and date at job start Tue Mar 31 2020 01:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47216 * 2 1 4 4 H 1.09007 * 109.47274 * 303.17522 * 3 2 1 5 5 C 1.50697 * 109.47574 * 183.17212 * 3 2 1 6 6 H 1.08000 * 120.00254 * 240.00198 * 5 3 2 7 7 C 1.37880 * 119.99800 * 59.99633 * 5 3 2 8 8 N 1.31506 * 120.00389 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99661 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47220 * 60.00075 * 9 7 5 11 11 H 1.48503 * 109.46806 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47037 * 300.00084 * 9 7 5 13 13 N 1.46902 * 109.47088 * 63.16668 * 3 2 1 14 14 C 1.46855 * 110.99516 * 65.47808 * 13 3 2 15 15 C 1.53148 * 109.46194 * 186.34400 * 14 13 3 16 16 C 1.52547 * 109.30856 * 301.71085 * 15 14 13 17 17 C 1.54130 * 110.07812 * 178.09393 * 16 15 14 18 18 C 1.54580 * 101.65006 * 143.31398 * 17 16 15 19 19 N 1.46823 * 105.50057 * 335.02725 * 18 17 16 20 20 C 1.46502 * 124.35848 * 196.94195 * 19 18 17 21 21 C 1.34584 * 111.27759 * 16.91777 * 19 18 17 22 22 O 1.21275 * 125.03331 * 179.31464 * 21 19 18 23 23 C 1.52544 * 110.48295 * 56.31132 * 16 15 14 24 24 C 1.46855 * 111.00339 * 189.80183 * 13 3 2 25 25 H 1.09004 * 109.46941 * 60.00274 * 1 2 3 26 26 H 1.09000 * 109.46647 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47540 * 300.00220 * 1 2 3 28 28 H 1.09004 * 109.46941 * 119.99725 * 2 1 3 29 29 H 1.08997 * 109.47540 * 239.99780 * 2 1 3 30 30 H 0.96991 * 120.00316 * 179.97438 * 8 7 5 31 31 H 1.08998 * 109.47090 * 306.33644 * 14 13 3 32 32 H 1.09001 * 109.47913 * 66.34401 * 14 13 3 33 33 H 1.09000 * 109.50187 * 181.75908 * 15 14 13 34 34 H 1.09003 * 109.52633 * 61.67034 * 15 14 13 35 35 H 1.09007 * 110.98891 * 261.40647 * 17 16 15 36 36 H 1.08996 * 110.99177 * 25.21855 * 17 16 15 37 37 H 1.08996 * 110.24129 * 216.01644 * 18 17 16 38 38 H 1.09000 * 110.31399 * 94.06666 * 18 17 16 39 39 H 1.09000 * 109.46656 * 179.97438 * 20 19 18 40 40 H 1.08994 * 109.47275 * 299.99567 * 20 19 18 41 41 H 1.09001 * 109.46946 * 60.00153 * 20 19 18 42 42 H 1.08998 * 109.49278 * 183.73503 * 23 16 15 43 43 H 1.08998 * 109.51837 * 63.66084 * 23 16 15 44 44 H 1.09006 * 109.47064 * 293.67177 * 24 13 3 45 45 H 1.09005 * 109.47053 * 53.67002 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6309 1.9725 -0.8602 5 6 3.5449 1.4433 -0.0786 6 1 4.1267 1.8962 0.7106 7 6 4.1792 0.8657 -1.1581 8 7 3.4708 0.3146 -2.1193 9 14 6.0447 0.8661 -1.2552 10 1 6.6015 0.1438 -0.0833 11 1 6.4754 0.1883 -2.5043 12 1 6.5400 2.2660 -1.2548 13 7 1.6138 2.1125 1.2359 14 6 2.2510 1.5042 2.4109 15 6 1.6655 2.1201 3.6850 16 6 1.8878 3.6291 3.6640 17 6 1.2627 4.2735 4.9168 18 6 2.2843 5.3885 5.2370 19 7 3.5543 4.9359 4.6556 20 6 4.8665 5.4847 5.0067 21 6 3.3576 3.9517 3.7591 22 8 4.2330 3.4049 3.1223 23 6 1.2833 4.2403 2.4038 24 6 1.8810 3.5551 1.1715 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.9170 -0.0914 -2.8788 31 1 2.0667 0.4299 2.4087 32 1 3.3248 1.6887 2.3783 33 1 2.1600 1.6916 4.5567 34 1 0.5969 1.9105 3.7332 35 1 0.2828 4.6946 4.6916 36 1 1.1989 3.5557 5.7345 37 1 2.3851 5.5092 6.3156 38 1 1.9743 6.3284 4.7803 39 1 5.6394 4.9735 4.4327 40 1 4.8880 6.5500 4.7774 41 1 5.0484 5.3383 6.0714 42 1 1.5084 5.3063 2.3725 43 1 0.2029 4.0967 2.4116 44 1 2.9575 3.7246 1.1478 45 1 1.4282 3.9687 0.2703 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255178350.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:55 Heat of formation + Delta-G solvation = -30.134811 kcal Electronic energy + Delta-G solvation = -24146.581013 eV Core-core repulsion = 20970.751633 eV Total energy + Delta-G solvation = -3175.829380 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.94495 -37.59095 -36.26224 -34.67718 -32.28663 -31.19212 -30.23127 -29.27518 -26.88201 -26.39375 -24.59590 -22.82620 -22.42611 -21.27575 -20.59323 -18.98827 -18.30266 -16.46017 -16.21512 -15.92800 -15.24195 -14.78203 -14.27670 -14.13226 -13.86226 -13.63686 -13.23007 -13.15424 -12.84129 -12.61955 -12.40176 -12.36337 -12.04827 -11.80928 -11.73518 -11.51443 -11.43475 -11.06122 -10.97174 -10.71320 -10.51396 -10.41451 -10.05541 -9.98582 -9.65960 -9.50347 -9.22163 -9.07981 -8.83677 -8.61578 -8.20513 -6.87964 -5.82501 -3.93453 2.89470 3.10492 3.41147 3.43653 3.50555 4.42031 4.50161 4.55734 4.76036 5.02109 5.16519 5.22618 5.28229 5.33635 5.41316 5.44831 5.51666 5.68977 5.75524 5.80096 5.91870 6.09160 6.12533 6.25877 6.32466 6.34931 6.43105 6.56593 6.62383 6.65628 6.75491 6.83419 6.98591 7.12578 7.22303 7.30686 7.35672 7.51269 7.77112 7.93439 8.15500 8.34252 8.47966 8.52562 8.66120 9.19322 9.73553 11.16668 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018455 B = 0.006656 C = 0.005288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.800401 B = 4205.710819 C = 5293.570396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 C 0.215 3.785 4 H 0.035 0.965 5 C -0.536 4.536 6 H 0.065 0.935 7 C 0.066 3.934 8 N -0.891 5.891 9 Si 0.885 3.115 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.530 5.530 14 C 0.048 3.952 15 C -0.092 4.092 16 C -0.086 4.086 17 C -0.127 4.127 18 C 0.106 3.894 19 N -0.635 5.635 20 C 0.096 3.904 21 C 0.523 3.477 22 O -0.501 6.501 23 C -0.091 4.091 24 C 0.058 3.942 25 H 0.037 0.963 26 H 0.023 0.977 27 H 0.048 0.952 28 H 0.032 0.968 29 H 0.091 0.909 30 H 0.259 0.741 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.076 0.924 44 H 0.045 0.955 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.183 9.643 15.176 18.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.149 4.149 3 C 0.109 3.891 4 H 0.053 0.947 5 C -0.575 4.575 6 H 0.083 0.917 7 C -0.135 4.135 8 N -0.531 5.531 9 Si 0.714 3.286 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.205 1.205 13 N -0.255 5.255 14 C -0.080 4.080 15 C -0.131 4.131 16 C -0.090 4.090 17 C -0.165 4.165 18 C -0.017 4.017 19 N -0.372 5.372 20 C -0.047 4.047 21 C 0.310 3.690 22 O -0.373 6.373 23 C -0.129 4.129 24 C -0.071 4.071 25 H 0.056 0.944 26 H 0.042 0.958 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.109 0.891 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.095 0.905 44 H 0.063 0.937 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.101 9.215 14.704 18.087 hybrid contribution 2.028 0.251 -0.082 2.045 sum -3.074 9.466 14.622 17.688 Atomic orbital electron populations 1.21699 0.98988 0.98190 1.00512 1.21592 0.92061 0.99347 1.01865 1.19227 0.92851 0.90906 0.86132 0.94741 1.21887 0.92887 1.36655 1.06060 0.91700 1.24892 0.97634 0.95308 0.95690 1.69869 1.34795 1.38565 1.09848 0.86762 0.86752 0.78124 0.76982 1.20416 1.21510 1.20517 1.62406 1.57470 1.01280 1.04294 1.22097 0.99268 0.98047 0.88579 1.21472 1.01551 0.91057 0.98999 1.21032 0.92574 0.98767 0.96577 1.22714 0.98640 0.97421 0.97695 1.22020 0.83481 0.97746 0.98432 1.48269 1.06927 1.38528 1.43427 1.21477 0.84190 0.98593 1.00395 1.20830 0.91329 0.78611 0.78196 1.90763 1.49191 1.52605 1.44791 1.21452 1.00550 0.97909 0.93031 1.21879 0.99391 0.90444 0.95384 0.94391 0.95816 0.93316 0.94940 0.89119 0.93134 0.91595 0.91434 0.92737 0.91025 0.89168 0.90132 0.90971 0.91504 0.90007 0.92554 0.92606 0.92625 0.90532 0.93660 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.78 37.16 0.36 -2.48 16 2 C -0.11 -2.70 5.11 -26.73 -0.14 -2.84 16 3 C 0.22 5.50 1.73 -68.87 -0.12 5.38 16 4 H 0.03 0.98 7.99 -51.93 -0.41 0.56 16 5 C -0.54 -15.20 7.24 -34.44 -0.25 -15.45 16 6 H 0.06 1.94 5.86 -52.49 -0.31 1.63 16 7 C 0.07 1.90 5.30 -17.82 -0.09 1.80 16 8 N -0.89 -26.07 11.30 55.43 0.63 -25.45 16 9 Si 0.89 22.74 29.54 -169.99 -5.02 17.72 16 10 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 12 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 13 N -0.53 -11.50 3.97 -227.93 -0.90 -12.40 16 14 C 0.05 1.01 4.55 -3.77 -0.02 0.99 16 15 C -0.09 -1.49 4.77 -26.89 -0.13 -1.61 16 16 C -0.09 -1.25 0.55 -155.50 -0.09 -1.34 16 17 C -0.13 -1.26 6.21 -25.31 -0.16 -1.42 16 18 C 0.11 0.99 7.36 -3.04 -0.02 0.97 16 19 N -0.63 -8.29 3.34 -180.35 -0.60 -8.89 16 20 C 0.10 1.04 11.15 59.85 0.67 1.71 16 21 C 0.52 8.89 6.33 -11.03 -0.07 8.82 16 22 O -0.50 -10.95 13.60 5.56 0.08 -10.88 16 23 C -0.09 -1.39 4.77 -26.89 -0.13 -1.52 16 24 C 0.06 1.17 4.96 -3.78 -0.02 1.15 16 25 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.96 7.70 -51.93 -0.40 0.56 16 28 H 0.03 0.79 6.27 -51.93 -0.33 0.46 16 29 H 0.09 2.48 5.99 -51.93 -0.31 2.17 16 30 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.07 1.42 6.12 -51.93 -0.32 1.10 16 32 H 0.07 1.65 4.05 -51.93 -0.21 1.44 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.09 0.73 7.87 -51.92 -0.41 0.32 16 36 H 0.08 0.73 7.89 -51.93 -0.41 0.32 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 1.06 7.54 -51.93 -0.39 0.67 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.05 1.07 5.84 -51.93 -0.30 0.77 16 45 H 0.06 1.26 8.01 -51.93 -0.42 0.84 16 LS Contribution 333.70 15.07 5.03 5.03 Total: -1.00 -32.03 333.70 -8.57 -40.59 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -7.58 Total: 0.09 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -0.20 Total: -5.82 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: -0.88 Total: -46.74 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.08 Total: -10.88 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.03 -8.57 -40.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255178350.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.460 kcal (2) G-P(sol) polarization free energy of solvation -32.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds