Wall clock time and date at job start Tue Mar 31 2020 01:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47216 * 2 1 4 4 H 1.09007 * 109.47274 * 303.17522 * 3 2 1 5 5 C 1.50697 * 109.47574 * 183.17212 * 3 2 1 6 6 H 1.08000 * 120.00254 * 240.00198 * 5 3 2 7 7 C 1.37880 * 119.99800 * 59.99633 * 5 3 2 8 8 N 1.31506 * 120.00389 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99661 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47220 * 60.00075 * 9 7 5 11 11 H 1.48503 * 109.46806 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47037 * 300.00084 * 9 7 5 13 13 N 1.46902 * 109.47088 * 63.16668 * 3 2 1 14 14 C 1.46855 * 110.99516 * 65.47808 * 13 3 2 15 15 C 1.53148 * 109.46194 * 186.34400 * 14 13 3 16 16 C 1.52547 * 109.30856 * 301.71085 * 15 14 13 17 17 C 1.54130 * 110.07812 * 178.09393 * 16 15 14 18 18 C 1.54580 * 101.65006 * 143.31398 * 17 16 15 19 19 N 1.46823 * 105.50057 * 335.02725 * 18 17 16 20 20 C 1.46502 * 124.35848 * 196.94195 * 19 18 17 21 21 C 1.34584 * 111.27759 * 16.91777 * 19 18 17 22 22 O 1.21275 * 125.03331 * 179.31464 * 21 19 18 23 23 C 1.52544 * 110.48295 * 56.31132 * 16 15 14 24 24 C 1.46855 * 111.00339 * 189.80183 * 13 3 2 25 25 H 1.09004 * 109.46941 * 60.00274 * 1 2 3 26 26 H 1.09000 * 109.46647 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47540 * 300.00220 * 1 2 3 28 28 H 1.09004 * 109.46941 * 119.99725 * 2 1 3 29 29 H 1.08997 * 109.47540 * 239.99780 * 2 1 3 30 30 H 0.96991 * 120.00316 * 179.97438 * 8 7 5 31 31 H 1.08998 * 109.47090 * 306.33644 * 14 13 3 32 32 H 1.09001 * 109.47913 * 66.34401 * 14 13 3 33 33 H 1.09000 * 109.50187 * 181.75908 * 15 14 13 34 34 H 1.09003 * 109.52633 * 61.67034 * 15 14 13 35 35 H 1.09007 * 110.98891 * 261.40647 * 17 16 15 36 36 H 1.08996 * 110.99177 * 25.21855 * 17 16 15 37 37 H 1.08996 * 110.24129 * 216.01644 * 18 17 16 38 38 H 1.09000 * 110.31399 * 94.06666 * 18 17 16 39 39 H 1.09000 * 109.46656 * 179.97438 * 20 19 18 40 40 H 1.08994 * 109.47275 * 299.99567 * 20 19 18 41 41 H 1.09001 * 109.46946 * 60.00153 * 20 19 18 42 42 H 1.08998 * 109.49278 * 183.73503 * 23 16 15 43 43 H 1.08998 * 109.51837 * 63.66084 * 23 16 15 44 44 H 1.09006 * 109.47064 * 293.67177 * 24 13 3 45 45 H 1.09005 * 109.47053 * 53.67002 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6309 1.9725 -0.8602 5 6 3.5449 1.4433 -0.0786 6 1 4.1267 1.8962 0.7106 7 6 4.1792 0.8657 -1.1581 8 7 3.4708 0.3146 -2.1193 9 14 6.0447 0.8661 -1.2552 10 1 6.6015 0.1438 -0.0833 11 1 6.4754 0.1883 -2.5043 12 1 6.5400 2.2660 -1.2548 13 7 1.6138 2.1125 1.2359 14 6 2.2510 1.5042 2.4109 15 6 1.6655 2.1201 3.6850 16 6 1.8878 3.6291 3.6640 17 6 1.2627 4.2735 4.9168 18 6 2.2843 5.3885 5.2370 19 7 3.5543 4.9359 4.6556 20 6 4.8665 5.4847 5.0067 21 6 3.3576 3.9517 3.7591 22 8 4.2330 3.4049 3.1223 23 6 1.2833 4.2403 2.4038 24 6 1.8810 3.5551 1.1715 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.9170 -0.0914 -2.8788 31 1 2.0667 0.4299 2.4087 32 1 3.3248 1.6887 2.3783 33 1 2.1600 1.6916 4.5567 34 1 0.5969 1.9105 3.7332 35 1 0.2828 4.6946 4.6916 36 1 1.1989 3.5557 5.7345 37 1 2.3851 5.5092 6.3156 38 1 1.9743 6.3284 4.7803 39 1 5.6394 4.9735 4.4327 40 1 4.8880 6.5500 4.7774 41 1 5.0484 5.3383 6.0714 42 1 1.5084 5.3063 2.3725 43 1 0.2029 4.0967 2.4116 44 1 2.9575 3.7246 1.1478 45 1 1.4282 3.9687 0.2703 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255178350.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:54 Heat of formation + Delta-G solvation = -51.825547 kcal Electronic energy + Delta-G solvation = -24147.521594 eV Core-core repulsion = 20970.751633 eV Total energy + Delta-G solvation = -3176.769961 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.12503 -39.21382 -37.51232 -36.23046 -34.10987 -32.94504 -31.68317 -30.54227 -28.30297 -27.81511 -26.07761 -24.55798 -23.98137 -22.39876 -21.98251 -20.87219 -19.63230 -18.24411 -17.44731 -17.17933 -16.98849 -16.26475 -15.86489 -15.68566 -15.22378 -14.94554 -14.70718 -14.51866 -14.36491 -14.23527 -13.61265 -13.44962 -13.30420 -13.23083 -13.19539 -12.98185 -12.94416 -12.77279 -12.61120 -12.53190 -12.21491 -11.94182 -11.91056 -11.58456 -11.52667 -11.23396 -10.98268 -10.77299 -10.42871 -10.40849 -9.61088 -8.80938 -8.02298 -6.22957 1.28780 1.29495 1.39190 1.65915 2.16358 2.37528 3.13181 3.34200 3.54957 3.62007 3.81563 4.09140 4.14951 4.37219 4.41026 4.46492 4.57014 4.65199 4.70187 4.74131 4.76106 4.78022 4.82592 4.84007 4.93240 4.97325 4.99726 5.07317 5.12656 5.22135 5.26412 5.32812 5.39212 5.45826 5.51794 5.57821 5.68580 5.74521 5.82516 6.10819 6.18563 6.26925 6.44670 6.75762 7.00210 7.31008 7.46314 8.90899 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018455 B = 0.006656 C = 0.005288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.800401 B = 4205.710819 C = 5293.570396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.104 4.104 3 C 0.220 3.780 4 H 0.002 0.998 5 C -0.544 4.544 6 H 0.041 0.959 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.937 3.063 10 H -0.281 1.281 11 H -0.273 1.273 12 H -0.284 1.284 13 N -0.515 5.515 14 C 0.051 3.949 15 C -0.084 4.084 16 C -0.089 4.089 17 C -0.113 4.113 18 C 0.101 3.899 19 N -0.632 5.632 20 C 0.090 3.910 21 C 0.505 3.495 22 O -0.568 6.568 23 C -0.079 4.079 24 C 0.056 3.944 25 H 0.033 0.967 26 H 0.045 0.955 27 H 0.062 0.938 28 H 0.026 0.974 29 H 0.059 0.941 30 H 0.261 0.739 31 H 0.051 0.949 32 H 0.027 0.973 33 H 0.063 0.937 34 H 0.096 0.904 35 H 0.121 0.879 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.048 0.952 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.103 0.897 44 H 0.002 0.998 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.324 11.200 18.006 22.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.143 4.143 3 C 0.113 3.887 4 H 0.020 0.980 5 C -0.583 4.583 6 H 0.059 0.941 7 C -0.176 4.176 8 N -0.549 5.549 9 Si 0.764 3.236 10 H -0.207 1.207 11 H -0.198 1.198 12 H -0.210 1.210 13 N -0.239 5.239 14 C -0.078 4.078 15 C -0.122 4.122 16 C -0.092 4.092 17 C -0.150 4.150 18 C -0.020 4.020 19 N -0.366 5.366 20 C -0.051 4.051 21 C 0.294 3.706 22 O -0.447 6.447 23 C -0.117 4.117 24 C -0.073 4.073 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.045 0.955 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.082 0.918 34 H 0.115 0.885 35 H 0.139 0.861 36 H 0.114 0.886 37 H 0.123 0.877 38 H 0.104 0.896 39 H 0.067 0.933 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.121 0.879 44 H 0.020 0.980 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.268 10.814 17.580 21.882 hybrid contribution 2.753 -0.176 -0.939 2.914 sum -4.515 10.638 16.641 20.260 Atomic orbital electron populations 1.21540 0.95657 0.99816 1.00945 1.21410 0.94956 0.97912 0.99976 1.19017 0.91010 0.91700 0.87016 0.98033 1.22033 0.94628 1.36253 1.05415 0.94102 1.25498 1.01185 0.95331 0.95631 1.69967 1.35934 1.38937 1.10090 0.85962 0.82639 0.77744 0.77294 1.20720 1.19806 1.21018 1.62416 1.56496 1.01941 1.03017 1.22041 0.97358 0.97686 0.90697 1.21405 1.02537 0.92161 0.96080 1.21060 0.91522 0.97873 0.98776 1.22756 0.99714 0.97450 0.95064 1.22382 0.81173 0.98105 1.00368 1.48487 1.09031 1.37077 1.42035 1.21621 0.82726 0.99266 1.01509 1.21412 0.91973 0.79047 0.78197 1.90738 1.51177 1.55203 1.47560 1.21395 1.01533 0.98271 0.90524 1.21928 0.97155 0.89976 0.98199 0.94791 0.93584 0.91904 0.95495 0.92230 0.92963 0.93040 0.95508 0.91805 0.88535 0.86095 0.88573 0.87728 0.89582 0.93256 0.90306 0.89775 0.90731 0.87878 0.98009 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.99 9.78 71.98 0.70 -4.29 16 2 C -0.10 -5.25 5.11 30.59 0.16 -5.09 16 3 C 0.22 11.81 1.73 44.17 0.08 11.88 16 4 H 0.00 0.10 7.99 -2.38 -0.02 0.09 16 5 C -0.54 -32.78 7.24 25.60 0.19 -32.60 16 6 H 0.04 2.64 5.86 -2.91 -0.02 2.62 16 7 C 0.02 1.37 5.30 84.66 0.45 1.82 16 8 N -0.91 -55.12 11.30 21.45 0.24 -54.88 16 9 Si 0.94 48.66 29.54 68.60 2.03 50.69 16 10 H -0.28 -14.65 7.11 99.48 0.71 -13.94 16 11 H -0.27 -13.40 7.11 99.48 0.71 -12.69 16 12 H -0.28 -14.87 7.11 99.48 0.71 -14.17 16 13 N -0.52 -22.94 3.97 -875.02 -3.47 -26.41 16 14 C 0.05 2.17 4.55 86.36 0.39 2.56 16 15 C -0.08 -2.54 4.77 30.49 0.15 -2.40 16 16 C -0.09 -2.37 0.55 -52.82 -0.03 -2.40 16 17 C -0.11 -1.62 6.21 31.51 0.20 -1.42 16 18 C 0.10 1.37 7.36 86.86 0.64 2.00 16 19 N -0.63 -15.07 3.34 -843.00 -2.82 -17.88 16 20 C 0.09 1.83 11.15 127.77 1.42 3.26 16 21 C 0.51 17.07 6.33 87.71 0.56 17.62 16 22 O -0.57 -26.50 13.60 -3.02 -0.04 -26.54 16 23 C -0.08 -2.24 4.77 30.49 0.15 -2.10 16 24 C 0.06 2.35 4.96 86.36 0.43 2.78 16 25 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 26 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.06 2.37 7.70 -2.39 -0.02 2.35 16 28 H 0.03 1.35 6.27 -2.38 -0.01 1.33 16 29 H 0.06 3.38 5.99 -2.39 -0.01 3.37 16 30 H 0.26 15.07 8.31 -92.72 -0.77 14.30 16 31 H 0.05 2.29 6.12 -2.39 -0.01 2.28 16 32 H 0.03 1.40 4.05 -2.39 -0.01 1.39 16 33 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.10 2.47 8.14 -2.39 -0.02 2.46 16 35 H 0.12 1.10 7.87 -2.38 -0.02 1.08 16 36 H 0.10 1.16 7.89 -2.39 -0.02 1.14 16 37 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.05 1.32 7.54 -2.39 -0.02 1.31 16 40 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.00 0.08 5.84 -2.38 -0.01 0.07 16 45 H 0.05 2.22 8.01 -2.38 -0.02 2.20 16 Total: -1.00 -77.39 333.70 2.37 -75.02 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: 0.96 Total: 8.37 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: 5.47 Total: -8.37 kcal Atomic # 7 Polarization: -93.12 SS G_CDS: -6.04 Total: -99.17 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.04 Total: -26.54 kcal Atomic # 14 Polarization: 48.66 SS G_CDS: 2.03 Total: 50.69 kcal Total: -77.39 2.37 -75.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255178350.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.194 kcal (2) G-P(sol) polarization free energy of solvation -77.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds