Wall clock time and date at job start Tue Mar 31 2020 01:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47181 * 2 1 4 4 H 1.09001 * 109.47581 * 56.38358 * 3 2 1 5 5 C 1.50700 * 109.47204 * 176.38219 * 3 2 1 6 6 H 1.08005 * 120.00017 * 119.99619 * 5 3 2 7 7 C 1.37878 * 120.00281 * 299.99780 * 5 3 2 8 8 N 1.31510 * 120.00408 * 180.02562 * 7 5 3 9 9 Si 1.86799 * 119.99498 * 359.97438 * 7 5 3 10 10 H 1.48505 * 109.47225 * 90.00195 * 9 7 5 11 11 H 1.48500 * 109.47195 * 209.99946 * 9 7 5 12 12 H 1.48497 * 109.47350 * 330.00145 * 9 7 5 13 13 N 1.46898 * 109.46978 * 296.37979 * 3 2 1 14 14 C 1.46854 * 111.00236 * 298.74201 * 13 3 2 15 15 C 1.53195 * 109.42057 * 173.45773 * 14 13 3 16 16 C 1.52241 * 109.35905 * 57.87296 * 15 14 13 17 17 C 1.53878 * 110.71079 * 180.88482 * 16 15 14 18 18 C 1.51446 * 104.10096 * 265.63945 * 17 16 15 19 19 O 1.21281 * 124.94974 * 164.63528 * 18 17 16 20 20 N 1.34510 * 110.11302 * 344.74589 * 18 17 16 21 21 C 1.46499 * 124.35091 * 179.46343 * 20 18 17 22 22 C 1.46936 * 111.29395 * 359.20437 * 20 18 17 23 23 C 1.52245 * 111.05886 * 304.30127 * 16 15 14 24 24 C 1.46865 * 111.00094 * 174.35820 * 13 3 2 25 25 H 1.09004 * 109.47210 * 185.07629 * 1 2 3 26 26 H 1.08999 * 109.47383 * 305.07576 * 1 2 3 27 27 H 1.09003 * 109.47326 * 65.07649 * 1 2 3 28 28 H 1.08998 * 109.47543 * 239.99527 * 2 1 3 29 29 H 1.09001 * 109.46687 * 119.99653 * 2 1 3 30 30 H 0.96998 * 120.00224 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.48167 * 53.47442 * 14 13 3 32 32 H 1.09006 * 109.48790 * 293.44788 * 14 13 3 33 33 H 1.08995 * 109.48988 * 297.89955 * 15 14 13 34 34 H 1.09002 * 109.48957 * 177.83433 * 15 14 13 35 35 H 1.09001 * 110.51300 * 24.49745 * 17 16 15 36 36 H 1.08996 * 110.51442 * 147.21447 * 17 16 15 37 37 H 1.09005 * 109.47240 * 269.70326 * 21 20 18 38 38 H 1.08998 * 109.47275 * 29.70231 * 21 20 18 39 39 H 1.09006 * 109.46780 * 149.70639 * 21 20 18 40 40 H 1.09003 * 110.27761 * 135.58441 * 22 20 18 41 41 H 1.09002 * 110.27484 * 257.65891 * 22 20 18 42 42 H 1.09003 * 109.48733 * 175.65544 * 23 16 15 43 43 H 1.08996 * 109.49640 * 295.72994 * 23 16 15 44 44 H 1.09000 * 109.47847 * 306.52507 * 24 13 3 45 45 H 1.08990 * 109.47955 * 66.54757 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6247 1.9747 0.8558 5 6 3.5443 1.4434 0.0897 6 1 4.1319 1.8942 -0.6965 7 6 4.1706 0.8687 1.1752 8 7 5.4834 0.8700 1.2538 9 14 3.1544 0.0897 2.5352 10 1 2.9254 -1.3440 2.2228 11 1 3.8816 0.2052 3.8248 12 1 1.8481 0.7883 2.6393 13 7 1.6230 2.1092 -1.2408 14 6 2.1897 1.4357 -2.4163 15 6 1.6048 2.0551 -3.6895 16 6 1.9059 3.5473 -3.7090 17 6 1.3121 4.2059 -4.9666 18 6 2.4552 4.2019 -5.9600 19 8 2.3397 4.3875 -7.1529 20 7 3.6172 3.9603 -5.3270 21 6 4.9195 3.8769 -5.9928 22 6 3.4132 3.7969 -3.8810 23 6 1.3868 4.2267 -2.4493 24 6 1.9791 3.5339 -1.2180 25 1 -0.3634 -1.0237 0.0909 26 1 -0.3634 0.5905 0.8410 27 1 -0.3634 0.4331 -0.9320 28 1 1.8934 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 5.9240 0.4654 2.0173 31 1 1.9425 0.3746 -2.3816 32 1 3.2730 1.5566 -2.4177 33 1 0.5258 1.9015 -3.7062 34 1 2.0533 1.5822 -4.5632 35 1 0.4726 3.6216 -5.3436 36 1 1.0012 5.2283 -4.7518 37 1 5.1098 2.8458 -6.2908 38 1 4.9177 4.5158 -6.8759 39 1 5.6999 4.2068 -5.3070 40 1 3.9819 2.9426 -3.5135 41 1 3.7086 4.7036 -3.3530 42 1 1.6826 5.2758 -2.4537 43 1 0.2996 4.1551 -2.4191 44 1 1.5791 3.9941 -0.3145 45 1 3.0640 3.6375 -1.2291 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255179816.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:37 Heat of formation + Delta-G solvation = -29.533478 kcal Electronic energy + Delta-G solvation = -23768.237375 eV Core-core repulsion = 20592.434071 eV Total energy + Delta-G solvation = -3175.803304 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.90978 -38.49327 -36.45115 -34.59874 -32.43330 -31.83668 -30.48958 -29.15240 -27.32149 -26.91836 -25.02974 -23.02199 -22.79256 -21.68518 -19.81722 -19.57600 -18.24770 -16.75092 -16.39988 -16.17323 -15.70355 -15.11151 -14.46508 -14.44310 -14.04596 -13.84295 -13.57273 -13.38640 -13.17363 -12.87698 -12.61692 -12.35091 -12.26657 -12.12576 -11.95404 -11.77089 -11.67951 -11.44894 -11.07310 -10.82973 -10.69710 -10.60009 -10.33094 -10.07001 -10.03667 -9.63018 -9.56882 -9.51219 -9.24554 -8.66601 -8.62084 -7.20146 -6.18077 -4.18851 2.64376 3.08995 3.21481 3.33167 3.34530 4.32164 4.39454 4.42969 4.75589 4.85673 4.97681 5.14061 5.25628 5.32619 5.35293 5.56885 5.64082 5.67812 5.68220 5.72713 5.74653 5.89456 5.94281 5.97779 6.01493 6.11155 6.16890 6.21037 6.29128 6.39385 6.49665 6.53270 6.64281 6.65649 6.76048 6.78246 6.88924 7.05789 7.14175 7.20139 7.50814 8.03958 8.10877 8.22130 8.38240 8.82933 9.45987 10.94560 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024759 B = 0.005215 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.624249 B = 5367.672355 C = 5959.060066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.123 4.123 3 C 0.181 3.819 4 H 0.039 0.961 5 C -0.544 4.544 6 H 0.075 0.925 7 C 0.075 3.925 8 N -0.898 5.898 9 Si 0.886 3.114 10 H -0.279 1.279 11 H -0.299 1.299 12 H -0.264 1.264 13 N -0.525 5.525 14 C 0.058 3.942 15 C -0.102 4.102 16 C -0.064 4.064 17 C -0.146 4.146 18 C 0.516 3.484 19 O -0.546 6.546 20 N -0.621 5.621 21 C 0.095 3.905 22 C 0.107 3.893 23 C -0.099 4.099 24 C 0.061 3.939 25 H 0.032 0.968 26 H 0.042 0.958 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.046 0.954 30 H 0.264 0.736 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.544 4.855 -7.934 11.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.161 4.161 3 C 0.074 3.926 4 H 0.056 0.944 5 C -0.583 4.583 6 H 0.093 0.907 7 C -0.128 4.128 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.227 1.227 12 H -0.189 1.189 13 N -0.249 5.249 14 C -0.070 4.070 15 C -0.140 4.140 16 C -0.064 4.064 17 C -0.186 4.186 18 C 0.305 3.695 19 O -0.424 6.424 20 N -0.355 5.355 21 C -0.047 4.047 22 C -0.016 4.016 23 C -0.137 4.137 24 C -0.067 4.067 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.863 4.864 -8.514 11.969 hybrid contribution 0.757 -0.537 1.000 1.364 sum -6.107 4.327 -7.514 10.606 Atomic orbital electron populations 1.21713 0.97301 0.99172 1.01722 1.21957 0.94100 0.99388 1.00621 1.19711 0.94316 0.90382 0.88208 0.94358 1.21596 0.90464 1.38660 1.07560 0.90675 1.24973 0.94670 0.95334 0.97846 1.69903 1.08131 1.44842 1.30656 0.86865 0.80494 0.79891 0.81055 1.20589 1.22664 1.18860 1.62269 1.58239 1.01357 1.02993 1.22003 0.97672 0.98319 0.88996 1.21538 1.01730 0.92494 0.98193 1.20955 0.93466 0.97208 0.94805 1.22411 0.97629 1.03554 0.94957 1.21056 0.85272 0.75045 0.88175 1.90684 1.85609 1.50940 1.15172 1.48293 1.07394 1.70805 1.08999 1.21526 0.83417 1.01908 0.97849 1.22359 0.97045 1.02621 0.79528 1.21536 1.01288 0.97887 0.92988 1.21904 0.98866 0.89626 0.96332 0.94933 0.93843 0.92106 0.92226 0.93607 0.92654 0.90933 0.93746 0.91024 0.92377 0.88034 0.87982 0.92588 0.90993 0.90948 0.89423 0.90923 0.91891 0.90847 0.91494 0.93840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.72 37.16 0.36 -2.06 16 2 C -0.12 -2.49 4.71 -26.73 -0.13 -2.62 16 3 C 0.18 3.88 1.35 -68.87 -0.09 3.79 16 4 H 0.04 0.88 7.12 -51.93 -0.37 0.51 16 5 C -0.54 -13.80 7.79 -34.44 -0.27 -14.07 16 6 H 0.08 2.06 6.10 -52.48 -0.32 1.74 16 7 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 8 N -0.90 -26.07 13.96 55.43 0.77 -25.30 16 9 Si 0.89 21.03 24.40 -169.99 -4.15 16.88 16 10 H -0.28 -6.52 6.84 56.52 0.39 -6.13 16 11 H -0.30 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.26 -5.99 6.53 56.52 0.37 -5.62 16 13 N -0.52 -9.36 4.10 -227.86 -0.94 -10.29 16 14 C 0.06 0.98 4.63 -3.75 -0.02 0.96 16 15 C -0.10 -1.37 4.77 -27.02 -0.13 -1.50 16 16 C -0.06 -0.79 0.60 -154.43 -0.09 -0.88 16 17 C -0.15 -1.70 5.96 -27.06 -0.16 -1.86 16 18 C 0.52 7.53 8.04 -10.74 -0.09 7.44 16 19 O -0.55 -9.80 17.59 5.56 0.10 -9.70 16 20 N -0.62 -8.23 3.34 -180.50 -0.60 -8.84 16 21 C 0.09 1.08 10.97 59.85 0.66 1.73 16 22 C 0.11 1.38 5.56 -3.41 -0.02 1.37 16 23 C -0.10 -1.23 4.70 -27.01 -0.13 -1.35 16 24 C 0.06 0.99 4.97 -3.74 -0.02 0.98 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.98 7.86 -51.93 -0.41 0.57 16 28 H 0.06 1.19 6.12 -51.93 -0.32 0.88 16 29 H 0.05 1.01 3.22 -51.93 -0.17 0.84 16 30 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.07 1.26 5.95 -51.93 -0.31 0.95 16 32 H 0.04 0.85 5.08 -51.93 -0.26 0.58 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.10 1.12 7.88 -51.93 -0.41 0.71 16 36 H 0.10 1.04 7.87 -51.93 -0.41 0.63 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.81 7.92 -51.93 -0.41 0.40 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 1.27 6.29 -51.93 -0.33 0.94 16 41 H 0.07 0.90 7.77 -51.93 -0.40 0.50 16 42 H 0.06 0.69 8.02 -51.93 -0.42 0.27 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.07 1.10 8.06 -51.93 -0.42 0.68 16 45 H 0.04 0.79 6.48 -51.93 -0.34 0.46 16 LS Contribution 330.11 15.07 4.97 4.97 Total: -1.00 -29.73 330.11 -7.49 -37.22 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -7.43 Total: 1.22 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -0.22 Total: -6.16 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: -0.76 Total: -44.43 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.10 Total: -9.70 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.15 Total: 16.88 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.73 -7.49 -37.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179816.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.684 kcal (2) G-P(sol) polarization free energy of solvation -29.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds