Wall clock time and date at job start Tue Mar 31 2020 01:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47181 * 2 1 4 4 H 1.09001 * 109.47581 * 56.38358 * 3 2 1 5 5 C 1.50700 * 109.47204 * 176.38219 * 3 2 1 6 6 H 1.08005 * 120.00017 * 119.99619 * 5 3 2 7 7 C 1.37878 * 120.00281 * 299.99780 * 5 3 2 8 8 N 1.31510 * 120.00408 * 180.02562 * 7 5 3 9 9 Si 1.86799 * 119.99498 * 359.97438 * 7 5 3 10 10 H 1.48505 * 109.47225 * 90.00195 * 9 7 5 11 11 H 1.48500 * 109.47195 * 209.99946 * 9 7 5 12 12 H 1.48497 * 109.47350 * 330.00145 * 9 7 5 13 13 N 1.46898 * 109.46978 * 296.37979 * 3 2 1 14 14 C 1.46854 * 111.00236 * 298.74201 * 13 3 2 15 15 C 1.53195 * 109.42057 * 173.45773 * 14 13 3 16 16 C 1.52241 * 109.35905 * 57.87296 * 15 14 13 17 17 C 1.53878 * 110.71079 * 180.88482 * 16 15 14 18 18 C 1.51446 * 104.10096 * 265.63945 * 17 16 15 19 19 O 1.21281 * 124.94974 * 164.63528 * 18 17 16 20 20 N 1.34510 * 110.11302 * 344.74589 * 18 17 16 21 21 C 1.46499 * 124.35091 * 179.46343 * 20 18 17 22 22 C 1.46936 * 111.29395 * 359.20437 * 20 18 17 23 23 C 1.52245 * 111.05886 * 304.30127 * 16 15 14 24 24 C 1.46865 * 111.00094 * 174.35820 * 13 3 2 25 25 H 1.09004 * 109.47210 * 185.07629 * 1 2 3 26 26 H 1.08999 * 109.47383 * 305.07576 * 1 2 3 27 27 H 1.09003 * 109.47326 * 65.07649 * 1 2 3 28 28 H 1.08998 * 109.47543 * 239.99527 * 2 1 3 29 29 H 1.09001 * 109.46687 * 119.99653 * 2 1 3 30 30 H 0.96998 * 120.00224 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.48167 * 53.47442 * 14 13 3 32 32 H 1.09006 * 109.48790 * 293.44788 * 14 13 3 33 33 H 1.08995 * 109.48988 * 297.89955 * 15 14 13 34 34 H 1.09002 * 109.48957 * 177.83433 * 15 14 13 35 35 H 1.09001 * 110.51300 * 24.49745 * 17 16 15 36 36 H 1.08996 * 110.51442 * 147.21447 * 17 16 15 37 37 H 1.09005 * 109.47240 * 269.70326 * 21 20 18 38 38 H 1.08998 * 109.47275 * 29.70231 * 21 20 18 39 39 H 1.09006 * 109.46780 * 149.70639 * 21 20 18 40 40 H 1.09003 * 110.27761 * 135.58441 * 22 20 18 41 41 H 1.09002 * 110.27484 * 257.65891 * 22 20 18 42 42 H 1.09003 * 109.48733 * 175.65544 * 23 16 15 43 43 H 1.08996 * 109.49640 * 295.72994 * 23 16 15 44 44 H 1.09000 * 109.47847 * 306.52507 * 24 13 3 45 45 H 1.08990 * 109.47955 * 66.54757 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6247 1.9747 0.8558 5 6 3.5443 1.4434 0.0897 6 1 4.1319 1.8942 -0.6965 7 6 4.1706 0.8687 1.1752 8 7 5.4834 0.8700 1.2538 9 14 3.1544 0.0897 2.5352 10 1 2.9254 -1.3440 2.2228 11 1 3.8816 0.2052 3.8248 12 1 1.8481 0.7883 2.6393 13 7 1.6230 2.1092 -1.2408 14 6 2.1897 1.4357 -2.4163 15 6 1.6048 2.0551 -3.6895 16 6 1.9059 3.5473 -3.7090 17 6 1.3121 4.2059 -4.9666 18 6 2.4552 4.2019 -5.9600 19 8 2.3397 4.3875 -7.1529 20 7 3.6172 3.9603 -5.3270 21 6 4.9195 3.8769 -5.9928 22 6 3.4132 3.7969 -3.8810 23 6 1.3868 4.2267 -2.4493 24 6 1.9791 3.5339 -1.2180 25 1 -0.3634 -1.0237 0.0909 26 1 -0.3634 0.5905 0.8410 27 1 -0.3634 0.4331 -0.9320 28 1 1.8934 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 5.9240 0.4654 2.0173 31 1 1.9425 0.3746 -2.3816 32 1 3.2730 1.5566 -2.4177 33 1 0.5258 1.9015 -3.7062 34 1 2.0533 1.5822 -4.5632 35 1 0.4726 3.6216 -5.3436 36 1 1.0012 5.2283 -4.7518 37 1 5.1098 2.8458 -6.2908 38 1 4.9177 4.5158 -6.8759 39 1 5.6999 4.2068 -5.3070 40 1 3.9819 2.9426 -3.5135 41 1 3.7086 4.7036 -3.3530 42 1 1.6826 5.2758 -2.4537 43 1 0.2996 4.1551 -2.4191 44 1 1.5791 3.9941 -0.3145 45 1 3.0640 3.6375 -1.2291 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255179816.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:36 Heat of formation + Delta-G solvation = -49.436253 kcal Electronic energy + Delta-G solvation = -23769.100424 eV Core-core repulsion = 20592.434071 eV Total energy + Delta-G solvation = -3176.666353 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.02766 -39.83951 -37.80669 -35.88518 -34.21575 -33.32180 -31.73109 -30.40415 -28.60562 -28.28830 -26.25679 -24.50720 -24.18750 -23.01875 -21.20630 -20.86136 -19.62166 -18.43675 -17.66540 -17.26474 -17.20016 -16.32631 -16.08076 -15.82778 -15.30900 -15.10370 -14.93382 -14.53410 -14.48760 -14.47199 -13.97492 -13.62841 -13.54630 -13.32191 -13.18814 -13.12467 -12.99618 -12.89336 -12.49808 -12.39079 -12.06217 -11.92708 -11.64999 -11.60595 -11.42932 -11.27547 -11.11110 -10.95864 -10.72874 -10.60639 -9.75817 -8.78630 -8.28246 -6.30773 1.31807 1.37580 1.46841 1.53331 2.06670 2.33148 3.08428 3.27982 3.36802 3.52604 3.70197 3.91745 4.19331 4.32092 4.34521 4.40140 4.44409 4.50812 4.54564 4.65691 4.69346 4.71892 4.72566 4.74564 4.77245 4.82887 4.98127 5.02553 5.04232 5.14816 5.19088 5.22518 5.30857 5.34684 5.39625 5.45689 5.50524 5.53695 5.62407 5.68486 6.07748 6.22250 6.45887 6.62722 6.78957 7.11590 7.37962 8.87710 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.024759 B = 0.005215 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.624249 B = 5367.672355 C = 5959.060066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.124 4.124 3 C 0.184 3.816 4 H 0.031 0.969 5 C -0.530 4.530 6 H 0.041 0.959 7 C 0.017 3.983 8 N -0.948 5.948 9 Si 0.942 3.058 10 H -0.272 1.272 11 H -0.306 1.306 12 H -0.244 1.244 13 N -0.513 5.513 14 C 0.063 3.937 15 C -0.091 4.091 16 C -0.058 4.058 17 C -0.132 4.132 18 C 0.509 3.491 19 O -0.584 6.584 20 N -0.622 5.622 21 C 0.089 3.911 22 C 0.109 3.891 23 C -0.086 4.086 24 C 0.058 3.942 25 H 0.051 0.949 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.056 0.944 29 H 0.030 0.970 30 H 0.262 0.738 31 H 0.065 0.935 32 H 0.012 0.988 33 H 0.090 0.910 34 H 0.058 0.942 35 H 0.116 0.884 36 H 0.127 0.873 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.065 0.935 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.065 0.935 45 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.484 5.353 -8.210 13.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.162 4.162 3 C 0.075 3.925 4 H 0.049 0.951 5 C -0.569 4.569 6 H 0.059 0.941 7 C -0.181 4.181 8 N -0.589 5.589 9 Si 0.771 3.229 10 H -0.199 1.199 11 H -0.234 1.234 12 H -0.168 1.168 13 N -0.236 5.236 14 C -0.066 4.066 15 C -0.129 4.129 16 C -0.059 4.059 17 C -0.171 4.171 18 C 0.298 3.702 19 O -0.466 6.466 20 N -0.354 5.354 21 C -0.053 4.053 22 C -0.013 4.013 23 C -0.124 4.124 24 C -0.070 4.070 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.030 0.970 33 H 0.108 0.892 34 H 0.077 0.923 35 H 0.134 0.866 36 H 0.145 0.855 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.110 0.890 44 H 0.084 0.916 45 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -9.820 5.366 -8.792 14.231 hybrid contribution 1.777 -0.664 1.028 2.158 sum -8.043 4.702 -7.764 12.128 Atomic orbital electron populations 1.21621 0.94198 1.00676 1.02443 1.21889 0.96826 0.97780 0.99700 1.19593 0.91254 0.91800 0.89817 0.95106 1.21904 0.92780 1.36387 1.05827 0.94083 1.25752 0.95444 0.96433 1.00448 1.70053 1.10022 1.47129 1.31682 0.85949 0.79682 0.79498 0.77819 1.19879 1.23444 1.16790 1.62320 1.57413 1.02073 1.01815 1.21963 0.95965 0.98338 0.90299 1.21447 1.02461 0.93035 0.95958 1.20897 0.92867 0.96544 0.95599 1.22391 0.96692 1.05100 0.92932 1.21564 0.86215 0.74328 0.88059 1.90666 1.86201 1.52864 1.16842 1.48446 1.07915 1.69998 1.09080 1.21662 0.83254 1.02166 0.98196 1.22317 0.97585 1.02065 0.79374 1.21470 1.02036 0.98485 0.90394 1.21988 0.97447 0.88954 0.98617 0.92979 0.93620 0.90952 0.92560 0.95202 0.92915 0.91622 0.96958 0.89182 0.92333 0.86568 0.85545 0.92380 0.90984 0.89511 0.91629 0.90169 0.89577 0.88950 0.91619 0.96739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.06 9.72 71.98 0.70 -3.36 16 2 C -0.12 -4.84 4.71 30.59 0.14 -4.70 16 3 C 0.18 7.75 1.35 44.17 0.06 7.81 16 4 H 0.03 1.37 7.12 -2.39 -0.02 1.35 16 5 C -0.53 -27.62 7.79 25.60 0.20 -27.42 16 6 H 0.04 2.38 6.10 -2.91 -0.02 2.36 16 7 C 0.02 0.94 5.45 84.66 0.46 1.40 16 8 N -0.95 -57.24 13.96 21.45 0.30 -56.94 16 9 Si 0.94 43.57 24.40 68.60 1.67 45.24 16 10 H -0.27 -12.20 6.84 99.48 0.68 -11.52 16 11 H -0.31 -14.40 7.11 99.48 0.71 -13.69 16 12 H -0.24 -10.39 6.53 99.48 0.65 -9.74 16 13 N -0.51 -17.64 4.10 -874.81 -3.59 -21.24 16 14 C 0.06 2.07 4.63 86.38 0.40 2.47 16 15 C -0.09 -2.26 4.77 30.41 0.14 -2.12 16 16 C -0.06 -1.30 0.60 -52.13 -0.03 -1.33 16 17 C -0.13 -2.61 5.96 30.38 0.18 -2.43 16 18 C 0.51 13.92 8.04 87.94 0.71 14.63 16 19 O -0.58 -20.33 17.59 -3.03 -0.05 -20.39 16 20 N -0.62 -15.86 3.34 -843.53 -2.82 -18.67 16 21 C 0.09 1.98 10.97 127.77 1.40 3.38 16 22 C 0.11 2.73 5.56 86.55 0.48 3.21 16 23 C -0.09 -1.84 4.70 30.41 0.14 -1.70 16 24 C 0.06 1.82 4.97 86.38 0.43 2.25 16 25 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.07 2.06 7.86 -2.39 -0.02 2.04 16 28 H 0.06 2.20 6.12 -2.39 -0.01 2.19 16 29 H 0.03 1.26 3.22 -2.39 -0.01 1.25 16 30 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 31 H 0.07 2.25 5.95 -2.39 -0.01 2.23 16 32 H 0.01 0.49 5.08 -2.38 -0.01 0.47 16 33 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.12 2.05 7.88 -2.39 -0.02 2.04 16 36 H 0.13 1.98 7.87 -2.39 -0.02 1.96 16 37 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.07 1.61 7.92 -2.39 -0.02 1.59 16 39 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 40 H 0.07 1.96 6.29 -2.39 -0.02 1.95 16 41 H 0.08 1.90 7.77 -2.39 -0.02 1.88 16 42 H 0.09 1.52 8.02 -2.39 -0.02 1.50 16 43 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.07 2.06 8.06 -2.39 -0.02 2.04 16 45 H 0.01 0.53 6.48 -2.39 -0.02 0.52 16 Total: -1.00 -66.30 330.11 1.82 -64.49 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.88 Total: 15.41 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: 5.42 Total: -7.91 kcal Atomic # 7 Polarization: -90.73 SS G_CDS: -6.11 Total: -96.84 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.05 Total: -20.39 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.67 Total: 45.24 kcal Total: -66.30 1.82 -64.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179816.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.049 kcal (2) G-P(sol) polarization free energy of solvation -66.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds