Wall clock time and date at job start Tue Mar 31 2020 02:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47343 * 2 1 4 4 N 1.46502 * 109.47235 * 179.97438 * 3 2 1 5 5 C 1.36935 * 120.00633 * 270.32608 * 4 3 2 6 6 H 1.08000 * 119.99463 * 326.14567 * 5 4 3 7 7 C 1.38806 * 120.00230 * 146.14211 * 5 4 3 8 8 N 1.31620 * 120.00262 * 336.90293 * 7 5 4 9 9 Si 1.86800 * 120.00075 * 156.90639 * 7 5 4 10 10 H 1.48495 * 109.47186 * 89.99723 * 9 7 5 11 11 H 1.48496 * 109.47404 * 210.00217 * 9 7 5 12 12 H 1.48509 * 109.46777 * 330.00037 * 9 7 5 13 13 C 1.46502 * 119.99486 * 90.32403 * 4 3 2 14 14 C 1.53007 * 109.47252 * 90.00438 * 13 4 3 15 15 N 1.46491 * 109.47073 * 179.97438 * 14 13 4 16 16 C 1.34779 * 119.99875 * 179.97438 * 15 14 13 17 17 O 1.21278 * 119.99583 * 0.02562 * 16 15 14 18 18 C 1.50704 * 120.00214 * 179.97438 * 16 15 14 19 19 C 1.52999 * 110.94180 * 303.99075 * 18 16 15 20 20 C 1.54629 * 111.03733 * 180.02562 * 18 16 15 21 21 C 1.51107 * 104.82613 * 266.66064 * 20 18 16 22 22 C 1.30531 * 111.09913 * 343.50337 * 21 20 18 23 23 C 1.51104 * 111.10740 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.47357 * 300.00424 * 1 2 3 25 25 H 1.09005 * 109.46785 * 59.99944 * 1 2 3 26 26 H 1.09000 * 109.47393 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47189 * 240.00172 * 2 1 3 28 28 H 1.09001 * 109.47232 * 120.00246 * 2 1 3 29 29 H 1.08998 * 109.47131 * 60.00049 * 3 2 1 30 30 H 1.08995 * 109.47297 * 299.99572 * 3 2 1 31 31 H 0.96994 * 120.00473 * 180.02562 * 8 7 5 32 32 H 1.08994 * 109.47554 * 329.99921 * 13 4 3 33 33 H 1.09004 * 109.46874 * 209.99856 * 13 4 3 34 34 H 1.09000 * 109.46899 * 59.99541 * 14 13 4 35 35 H 1.08996 * 109.46611 * 299.99780 * 14 13 4 36 36 H 0.97000 * 120.00780 * 359.97438 * 15 14 13 37 37 H 1.09001 * 109.47297 * 296.01117 * 19 18 16 38 38 H 1.08998 * 109.47496 * 56.01215 * 19 18 16 39 39 H 1.09002 * 109.46949 * 176.01079 * 19 18 16 40 40 H 1.08998 * 110.38801 * 147.78638 * 20 18 16 41 41 H 1.09000 * 110.38737 * 25.52642 * 20 18 16 42 42 H 1.07995 * 124.44897 * 163.48981 * 21 20 18 43 43 H 1.08006 * 124.44308 * 179.97438 * 22 21 20 44 44 H 1.09002 * 110.38250 * 135.24510 * 23 22 21 45 45 H 1.08998 * 110.38377 * 257.51168 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1893 1.4358 1.1867 6 1 3.7863 1.9522 2.0454 7 6 5.4008 0.7656 1.2853 8 7 5.6828 -0.2108 0.4489 9 14 6.6310 1.2491 2.6053 10 1 6.3756 0.4559 3.8344 11 1 8.0086 0.9807 2.1203 12 1 6.4867 2.6953 2.9105 13 6 4.2380 1.4494 -1.2679 14 6 4.4933 2.8944 -1.7015 15 7 5.2267 2.9013 -2.9696 16 6 5.5636 4.0717 -3.5468 17 8 5.2599 5.1190 -3.0161 18 6 6.3186 4.0789 -4.8511 19 6 7.6184 3.2803 -4.7349 20 6 6.5963 5.5248 -5.3237 21 6 5.4435 5.8598 -6.2413 22 6 4.8111 4.7806 -6.6146 23 6 5.4364 3.5461 -6.0077 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 6.5292 -0.6794 0.5180 32 1 3.6492 0.9398 -2.0305 33 1 5.1904 0.9348 -1.1400 34 1 5.0821 3.4039 -0.9388 35 1 3.5409 3.4089 -1.8293 36 1 5.4699 2.0636 -3.3939 37 1 8.2783 3.7630 -4.0140 38 1 7.3939 2.2674 -4.4006 39 1 8.1091 3.2415 -5.7074 40 1 7.5401 5.5720 -5.8668 41 1 6.6143 6.2056 -4.4726 42 1 5.1775 6.8606 -6.5478 43 1 3.9531 4.7714 -7.2705 44 1 4.6645 2.8805 -5.6211 45 1 6.0483 3.0283 -6.7462 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266571063.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:13 Heat of formation + Delta-G solvation = -16.293974 kcal Electronic energy + Delta-G solvation = -22558.184055 eV Core-core repulsion = 19382.954859 eV Total energy + Delta-G solvation = -3175.229196 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.32061 -37.51797 -36.34485 -34.26435 -32.84473 -31.87389 -30.70708 -28.41960 -27.81782 -25.60794 -25.55198 -23.68758 -21.97983 -21.23148 -19.88835 -19.02254 -18.88822 -17.00990 -16.47629 -15.78451 -15.30737 -15.03254 -14.63831 -14.26276 -14.08848 -13.84214 -13.23413 -13.00512 -12.96302 -12.72108 -12.58732 -12.39964 -12.19040 -12.05499 -11.91997 -11.31385 -11.24372 -11.20432 -11.00934 -10.86730 -10.74541 -10.69016 -10.47485 -10.27659 -9.96297 -9.91553 -9.68358 -9.39534 -8.91282 -8.56504 -8.43094 -6.67734 -5.83855 -3.36984 2.24562 3.00995 3.34192 3.42484 3.47761 3.60100 4.39681 4.47142 4.58578 4.82035 5.10472 5.19472 5.28284 5.35514 5.48519 5.55714 5.60779 5.67464 5.74260 5.74783 5.82333 5.85692 5.95595 6.07115 6.10090 6.12031 6.17031 6.25306 6.29071 6.49240 6.51420 6.54762 6.63644 6.70141 6.85445 6.93374 7.03835 7.07019 7.25428 7.59673 7.79175 7.99416 8.45060 8.65941 9.13216 9.77073 10.32540 11.16653 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015304 B = 0.004763 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.192678 B = 5876.823674 C = 7059.841196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.139 4.139 3 C 0.147 3.853 4 N -0.580 5.580 5 C -0.256 4.256 6 H 0.063 0.937 7 C 0.010 3.990 8 N -0.887 5.887 9 Si 0.895 3.105 10 H -0.286 1.286 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.133 3.867 14 C 0.100 3.900 15 N -0.718 5.718 16 C 0.523 3.477 17 O -0.545 6.545 18 C -0.090 4.090 19 C -0.135 4.135 20 C -0.085 4.085 21 C -0.153 4.153 22 C -0.177 4.177 23 C -0.086 4.086 24 H 0.047 0.953 25 H 0.044 0.956 26 H 0.042 0.958 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.043 0.957 30 H 0.033 0.967 31 H 0.254 0.746 32 H 0.027 0.973 33 H 0.105 0.895 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.396 0.604 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.123 0.877 43 H 0.123 0.877 44 H 0.074 0.926 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.020 4.459 -13.453 14.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C 0.021 3.979 4 N -0.300 5.300 5 C -0.386 4.386 6 H 0.081 0.919 7 C -0.190 4.190 8 N -0.530 5.530 9 Si 0.724 3.276 10 H -0.213 1.213 11 H -0.215 1.215 12 H -0.203 1.203 13 C 0.006 3.994 14 C -0.025 4.025 15 N -0.368 5.368 16 C 0.308 3.692 17 O -0.422 6.422 18 C -0.093 4.093 19 C -0.193 4.193 20 C -0.122 4.122 21 C -0.171 4.171 22 C -0.195 4.195 23 C -0.123 4.123 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.123 0.877 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.230 0.770 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.093 0.907 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.074 5.089 -13.015 13.975 hybrid contribution 0.693 -0.245 0.440 0.857 sum 0.619 4.844 -12.575 13.490 Atomic orbital electron populations 1.21759 0.97778 1.00306 1.00709 1.22073 0.93033 1.00777 1.02048 1.20969 0.85069 0.93514 0.98342 1.43706 0.99460 1.84866 1.01990 1.19081 1.02795 1.26440 0.90279 0.91896 1.25048 1.00601 0.95190 0.98155 1.69961 1.23599 1.20106 1.39384 0.86428 0.80896 0.78757 0.81545 1.21260 1.21494 1.20302 1.21101 1.00706 0.91025 0.86579 1.22308 0.94732 1.02494 0.83015 1.46064 1.57799 1.07876 1.25045 1.20151 0.79375 0.84028 0.85639 1.90651 1.55006 1.31800 1.64754 1.21692 0.96343 0.97868 0.93407 1.21776 0.95037 0.99886 1.02574 1.21349 0.97193 0.94694 0.98994 1.23233 0.97102 0.98477 0.98257 1.23190 1.00011 0.94817 1.01476 1.21472 0.98177 0.97010 0.95648 0.93386 0.93695 0.93882 0.93122 0.91866 0.93871 0.94854 0.93588 0.95494 0.87724 0.91789 0.93451 0.77027 0.91771 0.91621 0.91506 0.90245 0.89403 0.85924 0.85884 0.90720 0.89732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.91 37.16 0.37 -1.90 16 2 C -0.14 -2.70 6.26 -26.73 -0.17 -2.87 16 3 C 0.15 3.07 5.67 -4.04 -0.02 3.04 16 4 N -0.58 -14.01 2.45 -173.24 -0.42 -14.43 16 5 C -0.26 -6.84 9.48 -15.06 -0.14 -6.99 16 6 H 0.06 1.69 7.93 -52.49 -0.42 1.28 16 7 C 0.01 0.26 4.95 -17.43 -0.09 0.18 16 8 N -0.89 -24.42 11.31 55.49 0.63 -23.79 16 9 Si 0.89 21.35 29.61 -169.99 -5.03 16.32 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 13 C 0.13 2.96 5.41 -4.04 -0.02 2.94 16 14 C 0.10 2.06 6.00 -4.04 -0.02 2.04 16 15 N -0.72 -12.23 5.39 -60.30 -0.32 -12.56 16 16 C 0.52 8.98 6.52 -10.98 -0.07 8.91 16 17 O -0.54 -11.52 15.53 5.56 0.09 -11.43 16 18 C -0.09 -1.14 0.85 -153.79 -0.13 -1.27 16 19 C -0.14 -1.44 8.43 37.16 0.31 -1.13 16 20 C -0.09 -1.05 5.71 -26.83 -0.15 -1.20 16 21 C -0.15 -1.78 10.78 -35.70 -0.38 -2.16 16 22 C -0.18 -1.98 10.78 -35.70 -0.38 -2.37 16 23 C -0.09 -0.94 5.94 -26.67 -0.16 -1.10 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 29 H 0.04 0.89 8.04 -51.93 -0.42 0.48 16 30 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 31 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 32 H 0.03 0.56 8.07 -51.93 -0.42 0.14 16 33 H 0.11 2.60 5.31 -51.93 -0.28 2.32 16 34 H 0.06 1.51 8.14 -51.93 -0.42 1.08 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.40 5.78 7.70 -40.82 -0.31 5.47 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.68 7.37 -51.93 -0.38 0.30 16 39 H 0.07 0.57 8.06 -51.93 -0.42 0.15 16 40 H 0.08 0.80 7.89 -51.93 -0.41 0.39 16 41 H 0.09 1.27 7.01 -51.93 -0.36 0.90 16 42 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 43 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 44 H 0.07 0.84 7.86 -51.93 -0.41 0.44 16 45 H 0.08 0.75 7.84 -51.93 -0.41 0.35 16 LS Contribution 363.01 15.07 5.47 5.47 Total: -1.00 -30.19 363.01 -8.68 -38.87 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -8.02 Total: 5.45 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -1.07 Total: -3.89 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.12 Total: -50.78 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.43 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.19 -8.68 -38.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266571063.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.574 kcal (2) G-P(sol) polarization free energy of solvation -30.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds