Wall clock time and date at job start Tue Mar 31 2020 02:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47343 * 2 1 4 4 N 1.46502 * 109.47235 * 179.97438 * 3 2 1 5 5 C 1.36935 * 120.00633 * 270.32608 * 4 3 2 6 6 H 1.08000 * 119.99463 * 326.14567 * 5 4 3 7 7 C 1.38806 * 120.00230 * 146.14211 * 5 4 3 8 8 N 1.31620 * 120.00262 * 336.90293 * 7 5 4 9 9 Si 1.86800 * 120.00075 * 156.90639 * 7 5 4 10 10 H 1.48495 * 109.47186 * 89.99723 * 9 7 5 11 11 H 1.48496 * 109.47404 * 210.00217 * 9 7 5 12 12 H 1.48509 * 109.46777 * 330.00037 * 9 7 5 13 13 C 1.46502 * 119.99486 * 90.32403 * 4 3 2 14 14 C 1.53007 * 109.47252 * 90.00438 * 13 4 3 15 15 N 1.46491 * 109.47073 * 179.97438 * 14 13 4 16 16 C 1.34779 * 119.99875 * 179.97438 * 15 14 13 17 17 O 1.21278 * 119.99583 * 0.02562 * 16 15 14 18 18 C 1.50704 * 120.00214 * 179.97438 * 16 15 14 19 19 C 1.52999 * 110.94180 * 303.99075 * 18 16 15 20 20 C 1.54629 * 111.03733 * 180.02562 * 18 16 15 21 21 C 1.51107 * 104.82613 * 266.66064 * 20 18 16 22 22 C 1.30531 * 111.09913 * 343.50337 * 21 20 18 23 23 C 1.51104 * 111.10740 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.47357 * 300.00424 * 1 2 3 25 25 H 1.09005 * 109.46785 * 59.99944 * 1 2 3 26 26 H 1.09000 * 109.47393 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47189 * 240.00172 * 2 1 3 28 28 H 1.09001 * 109.47232 * 120.00246 * 2 1 3 29 29 H 1.08998 * 109.47131 * 60.00049 * 3 2 1 30 30 H 1.08995 * 109.47297 * 299.99572 * 3 2 1 31 31 H 0.96994 * 120.00473 * 180.02562 * 8 7 5 32 32 H 1.08994 * 109.47554 * 329.99921 * 13 4 3 33 33 H 1.09004 * 109.46874 * 209.99856 * 13 4 3 34 34 H 1.09000 * 109.46899 * 59.99541 * 14 13 4 35 35 H 1.08996 * 109.46611 * 299.99780 * 14 13 4 36 36 H 0.97000 * 120.00780 * 359.97438 * 15 14 13 37 37 H 1.09001 * 109.47297 * 296.01117 * 19 18 16 38 38 H 1.08998 * 109.47496 * 56.01215 * 19 18 16 39 39 H 1.09002 * 109.46949 * 176.01079 * 19 18 16 40 40 H 1.08998 * 110.38801 * 147.78638 * 20 18 16 41 41 H 1.09000 * 110.38737 * 25.52642 * 20 18 16 42 42 H 1.07995 * 124.44897 * 163.48981 * 21 20 18 43 43 H 1.08006 * 124.44308 * 179.97438 * 22 21 20 44 44 H 1.09002 * 110.38250 * 135.24510 * 23 22 21 45 45 H 1.08998 * 110.38377 * 257.51168 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1893 1.4358 1.1867 6 1 3.7863 1.9522 2.0454 7 6 5.4008 0.7656 1.2853 8 7 5.6828 -0.2108 0.4489 9 14 6.6310 1.2491 2.6053 10 1 6.3756 0.4559 3.8344 11 1 8.0086 0.9807 2.1203 12 1 6.4867 2.6953 2.9105 13 6 4.2380 1.4494 -1.2679 14 6 4.4933 2.8944 -1.7015 15 7 5.2267 2.9013 -2.9696 16 6 5.5636 4.0717 -3.5468 17 8 5.2599 5.1190 -3.0161 18 6 6.3186 4.0789 -4.8511 19 6 7.6184 3.2803 -4.7349 20 6 6.5963 5.5248 -5.3237 21 6 5.4435 5.8598 -6.2413 22 6 4.8111 4.7806 -6.6146 23 6 5.4364 3.5461 -6.0077 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 6.5292 -0.6794 0.5180 32 1 3.6492 0.9398 -2.0305 33 1 5.1904 0.9348 -1.1400 34 1 5.0821 3.4039 -0.9388 35 1 3.5409 3.4089 -1.8293 36 1 5.4699 2.0636 -3.3939 37 1 8.2783 3.7630 -4.0140 38 1 7.3939 2.2674 -4.4006 39 1 8.1091 3.2415 -5.7074 40 1 7.5401 5.5720 -5.8668 41 1 6.6143 6.2056 -4.4726 42 1 5.1775 6.8606 -6.5478 43 1 3.9531 4.7714 -7.2705 44 1 4.6645 2.8805 -5.6211 45 1 6.0483 3.0283 -6.7462 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266571063.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:12 Heat of formation + Delta-G solvation = -33.276523 kcal Electronic energy + Delta-G solvation = -22558.920473 eV Core-core repulsion = 19382.954859 eV Total energy + Delta-G solvation = -3175.965615 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.53159 -38.80152 -38.04947 -35.82223 -34.57019 -33.05015 -32.35910 -29.78496 -28.99646 -27.33986 -26.51396 -25.29680 -23.44015 -22.80256 -21.58096 -20.35936 -19.78756 -18.64941 -17.87701 -17.11465 -16.94111 -16.47506 -16.22201 -15.88035 -15.55103 -15.39445 -14.70998 -14.46534 -14.22978 -13.92440 -13.72337 -13.64557 -13.58855 -13.14846 -13.06554 -13.01715 -12.74456 -12.58315 -12.52141 -12.20609 -12.15935 -12.06976 -12.04530 -11.80985 -11.73041 -11.61534 -11.33504 -10.79982 -10.55823 -10.05673 -9.77334 -8.64545 -7.86733 -5.42860 1.38815 1.42285 1.46503 1.55371 1.65145 2.20086 2.51174 3.21827 3.44350 3.61349 3.69902 3.85064 4.09604 4.26134 4.34000 4.35054 4.38404 4.48387 4.54654 4.67579 4.69605 4.76736 4.78494 4.81597 4.83201 4.92985 4.95763 4.99574 5.05715 5.14047 5.16402 5.22623 5.27376 5.28239 5.43500 5.46091 5.60957 5.63577 5.66774 5.80394 6.00023 6.42990 6.62005 7.13050 7.28575 7.82757 8.32881 9.10443 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015304 B = 0.004763 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.192678 B = 5876.823674 C = 7059.841196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.129 4.129 3 C 0.144 3.856 4 N -0.597 5.597 5 C -0.269 4.269 6 H 0.054 0.946 7 C -0.029 4.029 8 N -0.908 5.908 9 Si 0.947 3.053 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.281 1.281 13 C 0.142 3.858 14 C 0.121 3.879 15 N -0.710 5.710 16 C 0.518 3.482 17 O -0.590 6.590 18 C -0.086 4.086 19 C -0.133 4.133 20 C -0.086 4.086 21 C -0.170 4.170 22 C -0.179 4.179 23 C -0.083 4.083 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.040 0.960 28 H 0.032 0.968 29 H 0.040 0.960 30 H 0.051 0.949 31 H 0.253 0.747 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.028 0.972 35 H 0.041 0.959 36 H 0.410 0.590 37 H 0.052 0.948 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.059 0.941 42 H 0.133 0.867 43 H 0.141 0.859 44 H 0.071 0.929 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.170 4.072 -15.302 15.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.169 4.169 3 C 0.018 3.982 4 N -0.318 5.318 5 C -0.399 4.399 6 H 0.071 0.929 7 C -0.227 4.227 8 N -0.552 5.552 9 Si 0.775 3.225 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.207 1.207 13 C 0.015 3.985 14 C -0.005 4.005 15 N -0.361 5.361 16 C 0.306 3.694 17 O -0.470 6.470 18 C -0.089 4.089 19 C -0.191 4.191 20 C -0.124 4.124 21 C -0.188 4.188 22 C -0.196 4.196 23 C -0.121 4.121 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.100 0.900 34 H 0.046 0.954 35 H 0.059 0.941 36 H 0.246 0.754 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.116 0.884 40 H 0.123 0.877 41 H 0.077 0.923 42 H 0.151 0.849 43 H 0.158 0.842 44 H 0.090 0.910 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.270 4.681 -14.886 15.607 hybrid contribution 0.707 -0.091 1.011 1.237 sum 0.437 4.590 -13.875 14.621 Atomic orbital electron populations 1.21667 0.94254 1.01731 1.01928 1.21901 0.96050 0.98969 0.99987 1.21098 0.83367 0.94671 0.99042 1.43930 1.00900 1.85105 1.01836 1.19222 1.03512 1.26127 0.91028 0.92881 1.25585 1.01738 0.95322 1.00039 1.70050 1.23768 1.20745 1.40611 0.85609 0.79061 0.78055 0.79736 1.20827 1.21364 1.20687 1.20952 0.99662 0.91500 0.86369 1.21792 0.94081 1.00876 0.83773 1.45920 1.57402 1.08953 1.23843 1.21051 0.78647 0.82951 0.86789 1.90629 1.56754 1.33321 1.66322 1.21725 0.97008 0.98998 0.91189 1.21817 0.93772 0.99348 1.04142 1.21385 0.98938 0.93647 0.98389 1.23390 0.97336 0.99416 0.98661 1.23450 1.00199 0.94648 1.01334 1.21541 0.98175 0.97035 0.95301 0.92649 0.91985 0.92391 0.94105 0.94956 0.94112 0.93094 0.93729 0.93993 0.89987 0.95353 0.94103 0.75357 0.92855 0.91344 0.88362 0.87740 0.92273 0.84884 0.84175 0.91000 0.86720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 9.91 71.98 0.71 -3.22 16 2 C -0.13 -4.93 6.26 30.59 0.19 -4.74 16 3 C 0.14 5.93 5.67 86.38 0.49 6.42 16 4 N -0.60 -29.19 2.45 -702.00 -1.72 -30.91 16 5 C -0.27 -14.62 9.48 84.03 0.80 -13.82 16 6 H 0.05 2.93 7.93 -2.91 -0.02 2.91 16 7 C -0.03 -1.58 4.95 84.86 0.42 -1.16 16 8 N -0.91 -50.50 11.31 21.65 0.24 -50.26 16 9 Si 0.95 44.46 29.61 68.60 2.03 46.49 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 12 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 13 C 0.14 6.37 5.41 86.38 0.47 6.84 16 14 C 0.12 5.10 6.00 86.38 0.52 5.62 16 15 N -0.71 -24.12 5.39 -463.07 -2.50 -26.61 16 16 C 0.52 17.75 6.52 87.66 0.57 18.32 16 17 O -0.59 -25.59 15.53 -3.02 -0.05 -25.64 16 18 C -0.09 -2.05 0.85 -51.72 -0.04 -2.10 16 19 C -0.13 -2.54 8.43 71.98 0.61 -1.93 16 20 C -0.09 -2.02 5.71 30.53 0.17 -1.84 16 21 C -0.17 -3.69 10.78 26.26 0.28 -3.41 16 22 C -0.18 -3.56 10.78 26.26 0.28 -3.27 16 23 C -0.08 -1.59 5.94 30.63 0.18 -1.41 16 24 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 26 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 28 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.04 1.68 8.04 -2.39 -0.02 1.66 16 30 H 0.05 1.91 8.07 -2.39 -0.02 1.89 16 31 H 0.25 13.61 8.31 -92.71 -0.77 12.84 16 32 H 0.04 1.72 8.07 -2.39 -0.02 1.70 16 33 H 0.08 4.14 5.31 -2.38 -0.01 4.12 16 34 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.41 11.60 7.70 -92.71 -0.71 10.88 16 37 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 1.26 7.37 -2.39 -0.02 1.25 16 39 H 0.10 1.28 8.06 -2.39 -0.02 1.26 16 40 H 0.10 1.86 7.89 -2.39 -0.02 1.84 16 41 H 0.06 1.73 7.01 -2.39 -0.02 1.71 16 42 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 43 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 44 H 0.07 1.44 7.86 -2.39 -0.02 1.42 16 45 H 0.11 1.55 7.84 -2.39 -0.02 1.53 16 Total: -1.00 -66.53 363.01 3.90 -62.64 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: 0.23 Total: 24.01 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 5.65 Total: 0.29 kcal Atomic # 7 Polarization: -103.81 SS G_CDS: -3.97 Total: -107.78 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.05 Total: -25.64 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -66.53 3.90 -62.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266571063.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.360 kcal (2) G-P(sol) polarization free energy of solvation -66.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds