Wall clock time and date at job start Tue Mar 31 2020 02:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46971 * 2 1 4 4 N 1.46503 * 109.46789 * 179.97438 * 3 2 1 5 5 C 1.36932 * 120.00132 * 275.31158 * 4 3 2 6 6 H 1.08002 * 120.00234 * 37.57495 * 5 4 3 7 7 C 1.38814 * 120.00252 * 217.58281 * 5 4 3 8 8 N 1.31621 * 119.99882 * 21.41875 * 7 5 4 9 9 Si 1.86798 * 120.00280 * 201.42699 * 7 5 4 10 10 H 1.48501 * 109.47239 * 89.99623 * 9 7 5 11 11 H 1.48497 * 109.47350 * 209.99362 * 9 7 5 12 12 H 1.48498 * 109.47240 * 329.99459 * 9 7 5 13 13 C 1.46503 * 119.99683 * 95.31506 * 4 3 2 14 14 C 1.52999 * 109.46821 * 269.99625 * 13 4 3 15 15 N 1.46506 * 109.47179 * 180.02562 * 14 13 4 16 16 C 1.34775 * 120.00080 * 180.02562 * 15 14 13 17 17 O 1.21287 * 119.99848 * 359.97438 * 16 15 14 18 18 C 1.50693 * 119.99857 * 179.97438 * 16 15 14 19 19 C 1.53892 * 113.58763 * 179.97438 * 18 16 15 20 20 C 1.53255 * 86.88448 * 220.34652 * 19 18 16 21 21 C 1.52462 * 128.58443 * 165.11151 * 20 19 18 22 22 C 1.52590 * 128.58524 * 245.01397 * 20 19 18 23 23 C 1.53261 * 87.69105 * 25.08392 * 20 19 18 24 24 H 1.09000 * 109.47133 * 59.99607 * 1 2 3 25 25 H 1.09004 * 109.47225 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46844 * 299.99976 * 1 2 3 27 27 H 1.09007 * 109.46833 * 240.00383 * 2 1 3 28 28 H 1.09000 * 109.47133 * 120.00393 * 2 1 3 29 29 H 1.09007 * 109.47029 * 60.00503 * 3 2 1 30 30 H 1.09000 * 109.47513 * 300.00161 * 3 2 1 31 31 H 0.97002 * 120.00061 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.47147 * 150.00038 * 13 4 3 33 33 H 1.08996 * 109.47381 * 29.99556 * 13 4 3 34 34 H 1.08996 * 109.47574 * 60.00027 * 14 13 4 35 35 H 1.09001 * 109.47544 * 300.00203 * 14 13 4 36 36 H 0.96994 * 119.99640 * 359.97438 * 15 14 13 37 37 H 1.09000 * 112.83445 * 311.11223 * 18 16 15 38 38 H 1.09004 * 113.64426 * 105.85111 * 19 18 16 39 39 H 1.08992 * 113.73239 * 334.86175 * 19 18 16 40 40 H 1.09004 * 117.51404 * 225.05242 * 21 20 19 41 41 H 1.08998 * 117.51544 * 10.11198 * 21 20 19 42 42 H 1.09000 * 117.54041 * 134.98774 * 22 20 19 43 43 H 1.08996 * 117.50654 * 349.85920 * 22 20 19 44 44 H 1.09005 * 113.64259 * 89.41457 * 23 20 19 45 45 H 1.08998 * 113.64176 * 220.41462 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.3329 1.1817 6 1 3.8169 0.6875 1.9636 7 6 5.3612 2.0513 1.3742 8 7 5.6020 3.1239 0.6503 9 14 6.5968 1.4959 2.6603 10 1 7.5670 0.5570 2.0418 11 1 7.3220 2.6773 3.1929 12 1 5.8838 0.8117 3.7688 13 6 4.2380 1.5598 -1.2624 14 6 4.4932 0.1643 -1.8354 15 7 5.2267 0.2815 -3.0982 16 6 5.5636 -0.8267 -3.7872 17 8 5.2598 -1.9211 -3.3616 18 6 6.3176 -0.7061 -5.0864 19 6 6.6258 -2.0611 -5.7476 20 6 8.0017 -1.4832 -6.0965 21 6 9.2538 -2.2209 -6.5573 22 6 8.5892 -1.1900 -7.4739 23 6 7.8359 -0.5331 -4.9054 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6766 1.9564 -0.8899 31 1 6.4212 3.6258 0.7845 32 1 5.1903 2.0593 -1.0848 33 1 3.6492 2.1416 -1.9715 34 1 3.5409 -0.3353 -2.0130 35 1 5.0820 -0.4176 -1.1263 36 1 5.4693 1.1567 -3.4387 37 1 5.8741 0.0207 -5.7669 38 1 6.0068 -2.2731 -6.6194 39 1 6.6665 -2.8931 -5.0446 40 1 10.2004 -1.9453 -6.0925 41 1 9.1493 -3.2728 -6.8234 42 1 9.0987 -0.2364 -7.6119 43 1 8.0471 -1.5639 -8.3424 44 1 8.2134 -0.9388 -3.9668 45 1 8.1871 0.4799 -5.1022 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266571548.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:10 Heat of formation + Delta-G solvation = 15.009264 kcal Electronic energy + Delta-G solvation = -22104.621157 eV Core-core repulsion = 18930.749371 eV Total energy + Delta-G solvation = -3173.871786 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.27939 -38.25192 -36.44412 -34.16525 -33.64553 -32.86127 -30.79337 -28.32487 -25.82877 -25.56854 -24.78969 -22.95101 -22.59362 -20.87806 -20.28504 -19.72149 -18.44937 -17.14229 -16.43070 -15.66073 -15.58542 -15.11967 -15.01321 -14.50485 -14.22055 -14.09347 -13.73120 -13.06713 -12.81179 -12.67540 -12.59263 -12.33986 -12.03844 -11.67620 -11.60437 -11.55298 -11.44340 -11.17825 -10.93350 -10.75985 -10.46745 -10.43660 -10.37356 -10.34952 -10.07936 -9.86570 -9.82066 -9.70687 -9.28737 -8.55538 -8.41476 -6.62753 -5.84150 -3.43137 2.97926 3.34694 3.42394 3.44381 3.48397 3.74737 4.21040 4.44972 4.47450 4.63519 4.70087 4.77308 5.23045 5.26416 5.32085 5.43483 5.49519 5.52997 5.65258 5.66295 5.67523 5.73958 5.77044 5.89468 5.94395 6.03498 6.13405 6.13739 6.22756 6.28699 6.29921 6.43487 6.54994 6.63072 6.67108 6.93444 6.98071 7.04185 7.18865 7.54663 7.79723 7.99708 8.47301 8.65670 9.14098 9.75927 10.33898 11.15736 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015084 B = 0.004220 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.810299 B = 6632.924997 C = 7907.992773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.145 4.145 3 C 0.148 3.852 4 N -0.580 5.580 5 C -0.261 4.261 6 H 0.062 0.938 7 C 0.014 3.986 8 N -0.887 5.887 9 Si 0.896 3.104 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.276 1.276 13 C 0.138 3.862 14 C 0.097 3.903 15 N -0.719 5.719 16 C 0.515 3.485 17 O -0.549 6.549 18 C -0.132 4.132 19 C -0.074 4.074 20 C -0.163 4.163 21 C -0.167 4.167 22 C -0.152 4.152 23 C -0.081 4.081 24 H 0.046 0.954 25 H 0.043 0.957 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.046 0.954 30 H 0.034 0.966 31 H 0.255 0.745 32 H 0.098 0.902 33 H 0.028 0.972 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.397 0.603 37 H 0.111 0.889 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.278 -4.849 -14.094 15.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.300 5.300 5 C -0.391 4.391 6 H 0.079 0.921 7 C -0.186 4.186 8 N -0.530 5.530 9 Si 0.726 3.274 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.201 1.201 13 C 0.010 3.990 14 C -0.029 4.029 15 N -0.369 5.369 16 C 0.301 3.699 17 O -0.427 6.427 18 C -0.153 4.153 19 C -0.112 4.112 20 C -0.163 4.163 21 C -0.204 4.204 22 C -0.189 4.189 23 C -0.119 4.119 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.046 0.954 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.230 0.770 37 H 0.129 0.871 38 H 0.088 0.912 39 H 0.117 0.883 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.108 0.892 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.160 -5.464 -13.714 14.920 hybrid contribution 0.826 0.137 0.460 0.955 sum 2.985 -5.328 -13.254 14.594 Atomic orbital electron populations 1.21722 0.97347 1.00396 1.00984 1.22188 0.93797 1.00953 1.01577 1.20937 0.85076 0.92963 0.98890 1.43607 0.99428 1.84834 1.02103 1.19042 1.05689 1.20360 0.93964 0.92054 1.25171 1.00797 0.94511 0.98114 1.69998 1.25605 1.14799 1.42571 0.86395 0.81663 0.77877 0.81508 1.21245 1.21694 1.20135 1.21056 1.00263 0.91258 0.86390 1.22437 0.94822 1.02626 0.82984 1.46151 1.57596 1.08557 1.24570 1.20391 0.79309 0.84562 0.85666 1.90664 1.55124 1.26828 1.70126 1.22610 0.96229 1.00800 0.95711 1.22359 0.92741 0.96213 0.99889 1.22208 0.95500 1.02156 0.96394 1.22793 0.96376 0.97603 1.03603 1.22798 1.03061 1.00531 0.92504 1.22396 0.93114 0.99123 0.97264 0.93481 0.93813 0.93203 0.92942 0.92369 0.93598 0.94769 0.93533 0.88422 0.95380 0.93103 0.91915 0.76980 0.87120 0.91207 0.88299 0.88731 0.88739 0.88624 0.88675 0.89167 0.90587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.91 37.16 0.37 -1.83 16 2 C -0.15 -2.69 6.23 -26.73 -0.17 -2.86 16 3 C 0.15 3.08 5.72 -4.04 -0.02 3.06 16 4 N -0.58 -14.04 2.43 -173.23 -0.42 -14.47 16 5 C -0.26 -7.00 9.45 -15.06 -0.14 -7.14 16 6 H 0.06 1.66 7.92 -52.49 -0.42 1.25 16 7 C 0.01 0.39 4.95 -17.43 -0.09 0.30 16 8 N -0.89 -24.66 11.47 55.49 0.64 -24.02 16 9 Si 0.90 21.41 29.60 -169.99 -5.03 16.37 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.14 3.06 5.45 -4.04 -0.02 3.04 16 14 C 0.10 1.98 6.00 -4.04 -0.02 1.96 16 15 N -0.72 -12.10 5.56 -60.29 -0.33 -12.43 16 16 C 0.52 8.65 7.36 -10.99 -0.08 8.56 16 17 O -0.55 -11.42 15.90 5.55 0.09 -11.33 16 18 C -0.13 -1.63 4.14 -90.85 -0.38 -2.00 16 19 C -0.07 -0.88 7.42 -26.14 -0.19 -1.08 16 20 C -0.16 -1.68 3.09 -154.73 -0.48 -2.16 16 21 C -0.17 -1.52 10.53 -26.94 -0.28 -1.80 16 22 C -0.15 -1.28 10.54 -26.88 -0.28 -1.57 16 23 C -0.08 -0.92 7.65 -26.13 -0.20 -1.12 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 1.00 6.64 -51.93 -0.34 0.66 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 30 H 0.03 0.67 7.83 -51.93 -0.41 0.26 16 31 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 32 H 0.10 2.43 5.52 -51.93 -0.29 2.15 16 33 H 0.03 0.58 7.86 -51.93 -0.41 0.17 16 34 H 0.05 1.07 6.64 -51.93 -0.34 0.72 16 35 H 0.06 1.48 8.14 -51.93 -0.42 1.05 16 36 H 0.40 5.65 8.47 -40.82 -0.35 5.31 16 37 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.10 1.36 7.43 -51.93 -0.39 0.98 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.09 1.15 8.10 -51.93 -0.42 0.73 16 45 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 365.23 15.07 5.50 5.50 Total: -1.00 -30.14 365.23 -9.54 -39.68 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -7.99 Total: 5.34 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -1.99 Total: -4.64 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: -0.12 Total: -50.92 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.14 -9.54 -39.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266571548.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.686 kcal (2) G-P(sol) polarization free energy of solvation -30.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds