Wall clock time and date at job start Tue Mar 31 2020 02:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46971 * 2 1 4 4 N 1.46503 * 109.46789 * 179.97438 * 3 2 1 5 5 C 1.36932 * 120.00132 * 275.31158 * 4 3 2 6 6 H 1.08002 * 120.00234 * 37.57495 * 5 4 3 7 7 C 1.38814 * 120.00252 * 217.58281 * 5 4 3 8 8 N 1.31621 * 119.99882 * 21.41875 * 7 5 4 9 9 Si 1.86798 * 120.00280 * 201.42699 * 7 5 4 10 10 H 1.48501 * 109.47239 * 89.99623 * 9 7 5 11 11 H 1.48497 * 109.47350 * 209.99362 * 9 7 5 12 12 H 1.48498 * 109.47240 * 329.99459 * 9 7 5 13 13 C 1.46503 * 119.99683 * 95.31506 * 4 3 2 14 14 C 1.52999 * 109.46821 * 269.99625 * 13 4 3 15 15 N 1.46506 * 109.47179 * 180.02562 * 14 13 4 16 16 C 1.34775 * 120.00080 * 180.02562 * 15 14 13 17 17 O 1.21287 * 119.99848 * 359.97438 * 16 15 14 18 18 C 1.50693 * 119.99857 * 179.97438 * 16 15 14 19 19 C 1.53892 * 113.58763 * 179.97438 * 18 16 15 20 20 C 1.53255 * 86.88448 * 220.34652 * 19 18 16 21 21 C 1.52462 * 128.58443 * 165.11151 * 20 19 18 22 22 C 1.52590 * 128.58524 * 245.01397 * 20 19 18 23 23 C 1.53261 * 87.69105 * 25.08392 * 20 19 18 24 24 H 1.09000 * 109.47133 * 59.99607 * 1 2 3 25 25 H 1.09004 * 109.47225 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46844 * 299.99976 * 1 2 3 27 27 H 1.09007 * 109.46833 * 240.00383 * 2 1 3 28 28 H 1.09000 * 109.47133 * 120.00393 * 2 1 3 29 29 H 1.09007 * 109.47029 * 60.00503 * 3 2 1 30 30 H 1.09000 * 109.47513 * 300.00161 * 3 2 1 31 31 H 0.97002 * 120.00061 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.47147 * 150.00038 * 13 4 3 33 33 H 1.08996 * 109.47381 * 29.99556 * 13 4 3 34 34 H 1.08996 * 109.47574 * 60.00027 * 14 13 4 35 35 H 1.09001 * 109.47544 * 300.00203 * 14 13 4 36 36 H 0.96994 * 119.99640 * 359.97438 * 15 14 13 37 37 H 1.09000 * 112.83445 * 311.11223 * 18 16 15 38 38 H 1.09004 * 113.64426 * 105.85111 * 19 18 16 39 39 H 1.08992 * 113.73239 * 334.86175 * 19 18 16 40 40 H 1.09004 * 117.51404 * 225.05242 * 21 20 19 41 41 H 1.08998 * 117.51544 * 10.11198 * 21 20 19 42 42 H 1.09000 * 117.54041 * 134.98774 * 22 20 19 43 43 H 1.08996 * 117.50654 * 349.85920 * 22 20 19 44 44 H 1.09005 * 113.64259 * 89.41457 * 23 20 19 45 45 H 1.08998 * 113.64176 * 220.41462 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.3329 1.1817 6 1 3.8169 0.6875 1.9636 7 6 5.3612 2.0513 1.3742 8 7 5.6020 3.1239 0.6503 9 14 6.5968 1.4959 2.6603 10 1 7.5670 0.5570 2.0418 11 1 7.3220 2.6773 3.1929 12 1 5.8838 0.8117 3.7688 13 6 4.2380 1.5598 -1.2624 14 6 4.4932 0.1643 -1.8354 15 7 5.2267 0.2815 -3.0982 16 6 5.5636 -0.8267 -3.7872 17 8 5.2598 -1.9211 -3.3616 18 6 6.3176 -0.7061 -5.0864 19 6 6.6258 -2.0611 -5.7476 20 6 8.0017 -1.4832 -6.0965 21 6 9.2538 -2.2209 -6.5573 22 6 8.5892 -1.1900 -7.4739 23 6 7.8359 -0.5331 -4.9054 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6766 1.9564 -0.8899 31 1 6.4212 3.6258 0.7845 32 1 5.1903 2.0593 -1.0848 33 1 3.6492 2.1416 -1.9715 34 1 3.5409 -0.3353 -2.0130 35 1 5.0820 -0.4176 -1.1263 36 1 5.4693 1.1567 -3.4387 37 1 5.8741 0.0207 -5.7669 38 1 6.0068 -2.2731 -6.6194 39 1 6.6665 -2.8931 -5.0446 40 1 10.2004 -1.9453 -6.0925 41 1 9.1493 -3.2728 -6.8234 42 1 9.0987 -0.2364 -7.6119 43 1 8.0471 -1.5639 -8.3424 44 1 8.2134 -0.9388 -3.9668 45 1 8.1871 0.4799 -5.1022 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266571548.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:09 Heat of formation + Delta-G solvation = -1.666476 kcal Electronic energy + Delta-G solvation = -22105.344271 eV Core-core repulsion = 18930.749371 eV Total energy + Delta-G solvation = -3174.594900 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.40336 -39.44442 -38.19784 -35.71725 -34.62745 -34.50633 -32.60675 -29.97304 -27.35544 -26.74724 -26.15772 -24.43933 -23.28767 -22.54713 -21.91025 -21.13565 -19.30435 -18.77878 -17.97616 -17.07600 -16.93794 -16.55953 -16.09861 -16.02572 -15.73054 -15.50258 -15.26407 -14.71440 -14.35337 -14.27342 -13.62688 -13.39452 -13.34659 -13.09782 -13.00590 -12.93223 -12.64563 -12.54013 -12.49941 -12.30525 -12.19659 -12.03595 -11.88676 -11.68387 -11.36243 -11.29435 -11.24833 -10.74100 -10.55343 -10.49338 -10.01610 -8.60672 -7.87242 -5.50444 1.42052 1.46171 1.52901 1.63269 2.23088 2.49380 2.86127 3.20215 3.39400 3.54137 3.68248 3.73825 3.89600 3.95633 4.17613 4.23983 4.33924 4.37124 4.41507 4.55171 4.67355 4.72485 4.75026 4.78443 4.81477 4.83060 4.85025 4.97807 5.00675 5.04098 5.15347 5.22306 5.24564 5.25662 5.31043 5.34760 5.42274 5.45911 5.61400 5.64804 5.73333 6.43447 6.64112 7.13255 7.30190 7.81230 8.33427 9.08423 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015084 B = 0.004220 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.810299 B = 6632.924997 C = 7907.992773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.145 3.855 4 N -0.597 5.597 5 C -0.272 4.272 6 H 0.051 0.949 7 C -0.025 4.025 8 N -0.909 5.909 9 Si 0.949 3.051 10 H -0.290 1.290 11 H -0.287 1.287 12 H -0.272 1.272 13 C 0.146 3.854 14 C 0.119 3.881 15 N -0.712 5.712 16 C 0.512 3.488 17 O -0.594 6.594 18 C -0.124 4.124 19 C -0.078 4.078 20 C -0.172 4.172 21 C -0.171 4.171 22 C -0.132 4.132 23 C -0.081 4.081 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.044 0.956 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.050 0.950 31 H 0.254 0.746 32 H 0.074 0.926 33 H 0.045 0.955 34 H 0.046 0.954 35 H 0.025 0.975 36 H 0.412 0.588 37 H 0.142 0.858 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.067 0.933 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.338 -4.492 -16.028 16.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.175 4.175 3 C 0.020 3.980 4 N -0.318 5.318 5 C -0.403 4.403 6 H 0.068 0.932 7 C -0.224 4.224 8 N -0.553 5.553 9 Si 0.778 3.222 10 H -0.217 1.217 11 H -0.213 1.213 12 H -0.197 1.197 13 C 0.019 3.981 14 C -0.008 4.008 15 N -0.363 5.363 16 C 0.300 3.700 17 O -0.475 6.475 18 C -0.144 4.144 19 C -0.115 4.115 20 C -0.172 4.172 21 C -0.208 4.208 22 C -0.169 4.169 23 C -0.118 4.118 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.043 0.957 36 H 0.248 0.752 37 H 0.160 0.840 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.127 0.873 43 H 0.126 0.874 44 H 0.086 0.914 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.213 -5.091 -15.667 16.622 hybrid contribution 0.782 -0.003 1.045 1.306 sum 2.995 -5.094 -14.622 15.771 Atomic orbital electron populations 1.21654 0.94165 1.01783 1.02050 1.22015 0.96493 0.98805 1.00142 1.21053 0.83345 0.94490 0.99108 1.43845 1.00877 1.85088 1.02000 1.19166 1.06389 1.19962 0.94739 0.93181 1.25723 1.01996 0.94656 0.99975 1.70079 1.25886 1.15482 1.43824 0.85561 0.79629 0.77325 0.79720 1.21720 1.21319 1.19677 1.20918 0.99182 0.91842 0.86158 1.21897 0.94218 1.00848 0.83798 1.46021 1.57213 1.09728 1.23317 1.21257 0.78505 0.83492 0.86748 1.90643 1.56856 1.28508 1.71524 1.22718 0.96235 1.02131 0.93364 1.22302 0.94423 0.95067 0.99746 1.22096 0.95210 1.02406 0.97534 1.22906 0.95875 0.98228 1.03808 1.22928 1.01688 1.00757 0.91491 1.22355 0.92067 1.00459 0.96962 0.92023 0.92297 0.92532 0.93771 0.94408 0.94596 0.93168 0.93634 0.90826 0.93689 0.93607 0.95686 0.75186 0.83992 0.89738 0.91079 0.88345 0.88353 0.87278 0.87376 0.91438 0.88623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 9.91 71.98 0.71 -3.18 16 2 C -0.13 -4.95 6.23 30.59 0.19 -4.76 16 3 C 0.15 6.04 5.72 86.38 0.49 6.54 16 4 N -0.60 -29.34 2.43 -701.99 -1.71 -31.05 16 5 C -0.27 -14.90 9.45 84.03 0.79 -14.11 16 6 H 0.05 2.80 7.92 -2.91 -0.02 2.78 16 7 C -0.03 -1.38 4.95 84.86 0.42 -0.96 16 8 N -0.91 -51.02 11.47 21.65 0.25 -50.77 16 9 Si 0.95 44.59 29.60 68.60 2.03 46.62 16 10 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 13 C 0.15 6.55 5.45 86.38 0.47 7.02 16 14 C 0.12 4.98 6.00 86.38 0.52 5.50 16 15 N -0.71 -23.88 5.56 -463.06 -2.57 -26.45 16 16 C 0.51 17.19 7.36 87.66 0.65 17.83 16 17 O -0.59 -25.44 15.90 -3.05 -0.05 -25.49 16 18 C -0.12 -2.86 4.14 -10.94 -0.05 -2.91 16 19 C -0.08 -1.76 7.42 30.98 0.23 -1.53 16 20 C -0.17 -3.22 3.09 -52.32 -0.16 -3.38 16 21 C -0.17 -2.75 10.53 30.46 0.32 -2.43 16 22 C -0.13 -1.78 10.54 30.50 0.32 -1.45 16 23 C -0.08 -1.72 7.65 30.98 0.24 -1.48 16 24 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 26 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.04 1.68 6.64 -2.38 -0.02 1.66 16 28 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.04 1.54 8.08 -2.38 -0.02 1.52 16 30 H 0.05 1.91 7.83 -2.39 -0.02 1.89 16 31 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 32 H 0.07 3.72 5.52 -2.39 -0.01 3.71 16 33 H 0.04 1.84 7.86 -2.39 -0.02 1.82 16 34 H 0.05 1.96 6.64 -2.39 -0.02 1.95 16 35 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.41 11.31 8.47 -92.71 -0.79 10.52 16 37 H 0.14 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.07 2.01 7.43 -2.39 -0.02 1.99 16 40 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 41 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.07 1.73 8.10 -2.38 -0.02 1.71 16 45 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -66.32 365.23 3.27 -63.05 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.17 Total: 23.39 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: 5.15 Total: 0.69 kcal Atomic # 7 Polarization: -104.24 SS G_CDS: -4.03 Total: -108.27 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.05 Total: -25.49 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -66.32 3.27 -63.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266571548.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.388 kcal (2) G-P(sol) polarization free energy of solvation -66.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds