Wall clock time and date at job start Tue Mar 31 2020 02:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50704 * 119.99506 * 2 1 4 4 C 1.52996 * 109.46931 * 125.00426 * 3 2 1 5 5 C 1.50694 * 109.47413 * 179.97438 * 4 3 2 6 6 O 1.21290 * 119.99969 * 0.02562 * 5 4 3 7 7 N 1.34781 * 120.00287 * 179.97438 * 5 4 3 8 8 C 1.46499 * 119.99786 * 0.02562 * 7 5 4 9 9 C 1.53000 * 109.46840 * 269.99584 * 8 7 5 10 10 C 1.52997 * 109.47060 * 180.02562 * 9 8 7 11 11 C 1.46504 * 119.99832 * 179.97438 * 7 5 4 12 12 H 1.09001 * 110.63740 * 181.68775 * 11 7 5 13 13 C 1.55155 * 110.72383 * 305.02668 * 11 7 5 14 14 C 1.54905 * 101.58143 * 153.86657 * 13 11 7 15 15 N 1.47422 * 104.83223 * 322.98992 * 14 13 11 16 16 C 1.36942 * 125.64740 * 204.16337 * 15 14 13 17 17 H 1.08002 * 119.99993 * 179.97438 * 16 15 14 18 18 C 1.38812 * 120.00337 * 359.96364 * 16 15 14 19 19 N 1.31627 * 119.99463 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 120.00533 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46821 * 59.99551 * 20 18 16 22 22 H 1.48493 * 109.47710 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46927 * 300.00109 * 20 18 16 24 24 C 1.47022 * 108.70486 * 24.13135 * 15 14 13 25 25 H 1.08002 * 119.99687 * 180.02562 * 1 2 3 26 26 H 1.08001 * 120.00524 * 359.97438 * 1 2 3 27 27 H 1.07994 * 120.00154 * 180.02562 * 2 1 3 28 28 H 1.08991 * 109.47398 * 5.00018 * 3 2 1 29 29 H 1.09000 * 109.47056 * 245.00223 * 3 2 1 30 30 H 1.09005 * 109.47329 * 59.99549 * 4 3 2 31 31 H 1.09000 * 109.47085 * 299.99779 * 4 3 2 32 32 H 1.09001 * 109.46813 * 149.99858 * 8 7 5 33 33 H 1.08992 * 109.47397 * 29.99919 * 8 7 5 34 34 H 1.09002 * 109.47398 * 300.00326 * 9 8 7 35 35 H 1.09001 * 109.47194 * 60.00507 * 9 8 7 36 36 H 1.09002 * 109.47153 * 300.00319 * 10 9 8 37 37 H 1.08998 * 109.47533 * 59.99948 * 10 9 8 38 38 H 1.08996 * 109.47853 * 180.02562 * 10 9 8 39 39 H 1.08994 * 111.00047 * 271.94020 * 13 11 7 40 40 H 1.09000 * 111.00206 * 35.79188 * 13 11 7 41 41 H 1.09001 * 110.36348 * 204.15042 * 14 13 11 42 42 H 1.09001 * 110.36767 * 81.82839 * 14 13 11 43 43 H 0.97001 * 119.99584 * 180.02562 * 19 18 16 44 44 H 1.09008 * 109.87893 * 239.52552 * 24 15 14 45 45 H 1.08995 * 110.01245 * 118.43454 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1815 5 6 3.7888 2.6380 1.1813 6 8 3.5702 3.4645 0.3210 7 7 4.7053 2.8870 2.1376 8 6 4.9690 1.8889 3.1771 9 6 4.0373 2.1325 4.3660 10 6 4.3131 1.0906 5.4519 11 6 5.4386 4.1554 2.1370 12 1 6.1581 4.1836 2.9552 13 6 6.1431 4.3815 0.7732 14 6 6.2355 5.9270 0.7235 15 7 4.9807 6.4000 1.3358 16 6 4.3928 7.6165 1.1127 17 1 3.4690 7.8695 1.6118 18 6 4.9842 8.5247 0.2453 19 7 6.1104 8.2166 -0.3624 20 14 4.1819 10.1837 -0.0596 21 1 4.0788 10.9267 1.2221 22 1 5.0056 10.9633 -1.0182 23 1 2.8237 9.9804 -0.6245 24 6 4.4646 5.3492 2.2251 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5401 0.9353 0.0004 27 1 1.8500 -0.9352 -0.0004 28 1 1.3585 2.1316 0.0896 29 1 2.6211 1.4028 -0.9314 30 1 3.7399 0.5066 1.0920 31 1 2.4772 1.2356 2.1129 32 1 6.0053 1.9709 3.5049 33 1 4.7927 0.8911 2.7758 34 1 4.2136 3.1305 4.7674 35 1 3.0010 2.0506 4.0382 36 1 4.1371 0.0924 5.0508 37 1 5.3494 1.1728 5.7796 38 1 3.6491 1.2637 6.2987 39 1 7.1352 3.9304 0.7665 40 1 5.5364 3.9998 -0.0480 41 1 6.3067 6.2697 -0.3088 42 1 7.0932 6.2745 1.2994 43 1 6.5239 8.8513 -0.9683 44 1 3.4711 5.0419 1.8982 45 1 4.4202 5.7166 3.2503 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267536821.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:02 Heat of formation + Delta-G solvation = 5.752049 kcal Electronic energy + Delta-G solvation = -22966.757697 eV Core-core repulsion = 19792.484488 eV Total energy + Delta-G solvation = -3174.273209 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.07259 -36.95035 -35.87759 -35.28855 -32.98159 -31.80919 -30.63505 -28.96688 -27.31572 -26.03799 -24.83118 -23.64989 -21.82927 -20.73651 -20.02148 -19.83193 -18.34821 -16.93056 -16.59688 -15.97791 -15.62367 -14.95580 -14.63204 -14.49776 -14.16808 -13.78657 -13.76485 -13.36490 -12.98858 -12.69897 -12.31234 -12.20822 -12.10198 -11.98860 -11.67262 -11.44445 -11.32785 -11.14544 -11.08182 -10.88810 -10.76298 -10.72967 -10.63481 -10.37138 -10.03595 -9.71410 -9.50159 -9.43078 -8.95577 -8.51301 -8.20962 -6.66180 -5.50931 -2.91049 2.15060 2.99082 3.25238 3.49438 3.52925 3.54870 4.55093 4.62015 4.76566 4.86653 4.86849 5.06885 5.12275 5.18310 5.24203 5.31753 5.46107 5.49200 5.55207 5.58864 5.65091 5.72292 5.75343 5.86428 5.88075 5.92744 5.93455 6.00539 6.16676 6.18053 6.40331 6.51644 6.63774 6.66882 6.70021 6.73200 6.86565 7.29717 7.62650 7.76407 7.77343 8.00424 8.51087 8.60474 9.36398 9.97772 10.63309 11.53069 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015880 B = 0.004803 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.768563 B = 5828.764525 C = 6807.916216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.151 4.151 3 C -0.082 4.082 4 C -0.133 4.133 5 C 0.503 3.497 6 O -0.507 6.507 7 N -0.608 5.608 8 C 0.110 3.890 9 C -0.146 4.146 10 C -0.149 4.149 11 C 0.135 3.865 12 H 0.085 0.915 13 C -0.156 4.156 14 C 0.159 3.841 15 N -0.596 5.596 16 C -0.214 4.214 17 H 0.074 0.926 18 C -0.013 4.013 19 N -0.924 5.924 20 Si 0.913 3.087 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.286 1.286 24 C 0.135 3.865 25 H 0.095 0.905 26 H 0.097 0.903 27 H 0.107 0.893 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.050 0.950 40 H 0.082 0.918 41 H 0.106 0.894 42 H 0.008 0.992 43 H 0.251 0.749 44 H 0.035 0.965 45 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.941 -19.677 7.633 21.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.169 4.169 3 C -0.119 4.119 4 C -0.174 4.174 5 C 0.290 3.710 6 O -0.382 6.382 7 N -0.341 5.341 8 C -0.013 4.013 9 C -0.184 4.184 10 C -0.207 4.207 11 C 0.032 3.968 12 H 0.103 0.897 13 C -0.196 4.196 14 C 0.033 3.967 15 N -0.322 5.322 16 C -0.342 4.342 17 H 0.092 0.908 18 C -0.208 4.208 19 N -0.574 5.574 20 Si 0.744 3.256 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.213 1.213 24 C 0.008 3.992 25 H 0.113 0.887 26 H 0.115 0.885 27 H 0.125 0.875 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.101 0.899 41 H 0.124 0.876 42 H 0.026 0.974 43 H 0.061 0.939 44 H 0.053 0.947 45 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -4.019 -19.016 7.035 20.670 hybrid contribution -0.348 0.735 0.125 0.823 sum -4.367 -18.281 7.160 20.113 Atomic orbital electron populations 1.23871 0.96030 1.01786 1.01688 1.22993 0.96062 0.98384 0.99460 1.20526 0.97970 0.95184 0.98254 1.21676 0.98746 0.96196 1.00736 1.20595 0.79906 0.88909 0.81552 1.90819 1.63851 1.47225 1.36255 1.48038 1.40357 1.18070 1.27683 1.21625 0.99729 0.91870 0.88111 1.22008 1.00219 1.00292 0.95918 1.21700 1.01763 0.98723 0.98466 1.22176 0.93335 0.82261 0.99062 0.89671 1.23437 0.98225 1.01126 0.96783 1.21829 0.86991 0.86091 1.01761 1.44284 1.24595 1.13633 1.49666 1.19011 1.04355 0.89766 1.21111 0.90814 1.24749 0.97518 0.98713 0.99835 1.69797 1.19154 1.34939 1.33465 0.86162 0.78339 0.83553 0.77518 1.21366 1.21625 1.21262 1.21456 0.96188 0.88297 0.93238 0.88705 0.88472 0.87535 0.90604 0.90123 0.89385 0.89303 0.90488 0.90636 0.91236 0.91768 0.92730 0.92577 0.92577 0.93082 0.89904 0.87609 0.97389 0.93875 0.94709 0.96884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.81 14.32 29.02 0.42 -1.40 16 2 C -0.15 -1.45 9.52 -36.02 -0.34 -1.80 16 3 C -0.08 -0.98 4.95 -27.88 -0.14 -1.12 16 4 C -0.13 -1.51 4.23 -27.89 -0.12 -1.63 16 5 C 0.50 8.13 6.78 -10.99 -0.07 8.06 16 6 O -0.51 -10.85 12.33 5.55 0.07 -10.78 16 7 N -0.61 -9.08 2.54 -164.03 -0.42 -9.49 16 8 C 0.11 1.13 5.20 -4.04 -0.02 1.10 16 9 C -0.15 -1.39 6.26 -26.73 -0.17 -1.56 16 10 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 11 C 0.13 2.51 3.45 -66.10 -0.23 2.28 16 12 H 0.09 1.42 7.86 -51.93 -0.41 1.02 16 13 C -0.16 -3.30 6.40 -24.59 -0.16 -3.46 16 14 C 0.16 4.15 5.89 -2.53 -0.01 4.13 16 15 N -0.60 -16.53 3.39 -170.07 -0.58 -17.10 16 16 C -0.21 -6.39 10.27 -15.06 -0.15 -6.55 16 17 H 0.07 2.14 7.83 -52.49 -0.41 1.73 16 18 C -0.01 -0.39 5.49 -17.43 -0.10 -0.49 16 19 N -0.92 -28.35 10.09 55.49 0.56 -27.79 16 20 Si 0.91 23.25 29.55 -169.99 -5.02 18.23 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 C 0.14 3.11 6.49 -3.06 -0.02 3.09 16 25 H 0.09 0.72 8.06 -52.49 -0.42 0.29 16 26 H 0.10 0.93 7.84 -52.49 -0.41 0.52 16 27 H 0.11 0.85 8.06 -52.49 -0.42 0.43 16 28 H 0.08 1.04 7.75 -51.93 -0.40 0.64 16 29 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 30 H 0.09 0.80 7.40 -51.93 -0.38 0.41 16 31 H 0.09 0.88 7.18 -51.93 -0.37 0.50 16 32 H 0.08 0.72 7.94 -51.93 -0.41 0.31 16 33 H 0.08 0.61 6.44 -51.93 -0.33 0.28 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.64 7.22 -51.93 -0.37 0.26 16 36 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.08 1.91 5.82 -51.93 -0.30 1.61 16 41 H 0.11 3.13 5.87 -51.93 -0.31 2.83 16 42 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.04 0.86 6.28 -51.92 -0.33 0.53 16 45 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 353.32 15.07 5.32 5.32 Total: -1.00 -34.08 353.32 -8.62 -42.70 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -7.81 Total: -1.03 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -0.75 Total: -0.04 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.43 Total: -54.39 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.07 Total: -10.78 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -5.02 Total: 18.23 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.08 -8.62 -42.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267536821.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.448 kcal (2) G-P(sol) polarization free energy of solvation -34.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds