Wall clock time and date at job start Tue Mar 31 2020 02:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50704 * 119.99506 * 2 1 4 4 C 1.52996 * 109.46931 * 125.00426 * 3 2 1 5 5 C 1.50694 * 109.47413 * 179.97438 * 4 3 2 6 6 O 1.21290 * 119.99969 * 0.02562 * 5 4 3 7 7 N 1.34781 * 120.00287 * 179.97438 * 5 4 3 8 8 C 1.46499 * 119.99786 * 0.02562 * 7 5 4 9 9 C 1.53000 * 109.46840 * 269.99584 * 8 7 5 10 10 C 1.52997 * 109.47060 * 180.02562 * 9 8 7 11 11 C 1.46504 * 119.99832 * 179.97438 * 7 5 4 12 12 H 1.09001 * 110.63740 * 181.68775 * 11 7 5 13 13 C 1.55155 * 110.72383 * 305.02668 * 11 7 5 14 14 C 1.54905 * 101.58143 * 153.86657 * 13 11 7 15 15 N 1.47422 * 104.83223 * 322.98992 * 14 13 11 16 16 C 1.36942 * 125.64740 * 204.16337 * 15 14 13 17 17 H 1.08002 * 119.99993 * 179.97438 * 16 15 14 18 18 C 1.38812 * 120.00337 * 359.96364 * 16 15 14 19 19 N 1.31627 * 119.99463 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 120.00533 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46821 * 59.99551 * 20 18 16 22 22 H 1.48493 * 109.47710 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46927 * 300.00109 * 20 18 16 24 24 C 1.47022 * 108.70486 * 24.13135 * 15 14 13 25 25 H 1.08002 * 119.99687 * 180.02562 * 1 2 3 26 26 H 1.08001 * 120.00524 * 359.97438 * 1 2 3 27 27 H 1.07994 * 120.00154 * 180.02562 * 2 1 3 28 28 H 1.08991 * 109.47398 * 5.00018 * 3 2 1 29 29 H 1.09000 * 109.47056 * 245.00223 * 3 2 1 30 30 H 1.09005 * 109.47329 * 59.99549 * 4 3 2 31 31 H 1.09000 * 109.47085 * 299.99779 * 4 3 2 32 32 H 1.09001 * 109.46813 * 149.99858 * 8 7 5 33 33 H 1.08992 * 109.47397 * 29.99919 * 8 7 5 34 34 H 1.09002 * 109.47398 * 300.00326 * 9 8 7 35 35 H 1.09001 * 109.47194 * 60.00507 * 9 8 7 36 36 H 1.09002 * 109.47153 * 300.00319 * 10 9 8 37 37 H 1.08998 * 109.47533 * 59.99948 * 10 9 8 38 38 H 1.08996 * 109.47853 * 180.02562 * 10 9 8 39 39 H 1.08994 * 111.00047 * 271.94020 * 13 11 7 40 40 H 1.09000 * 111.00206 * 35.79188 * 13 11 7 41 41 H 1.09001 * 110.36348 * 204.15042 * 14 13 11 42 42 H 1.09001 * 110.36767 * 81.82839 * 14 13 11 43 43 H 0.97001 * 119.99584 * 180.02562 * 19 18 16 44 44 H 1.09008 * 109.87893 * 239.52552 * 24 15 14 45 45 H 1.08995 * 110.01245 * 118.43454 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1815 5 6 3.7888 2.6380 1.1813 6 8 3.5702 3.4645 0.3210 7 7 4.7053 2.8870 2.1376 8 6 4.9690 1.8889 3.1771 9 6 4.0373 2.1325 4.3660 10 6 4.3131 1.0906 5.4519 11 6 5.4386 4.1554 2.1370 12 1 6.1581 4.1836 2.9552 13 6 6.1431 4.3815 0.7732 14 6 6.2355 5.9270 0.7235 15 7 4.9807 6.4000 1.3358 16 6 4.3928 7.6165 1.1127 17 1 3.4690 7.8695 1.6118 18 6 4.9842 8.5247 0.2453 19 7 6.1104 8.2166 -0.3624 20 14 4.1819 10.1837 -0.0596 21 1 4.0788 10.9267 1.2221 22 1 5.0056 10.9633 -1.0182 23 1 2.8237 9.9804 -0.6245 24 6 4.4646 5.3492 2.2251 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5401 0.9353 0.0004 27 1 1.8500 -0.9352 -0.0004 28 1 1.3585 2.1316 0.0896 29 1 2.6211 1.4028 -0.9314 30 1 3.7399 0.5066 1.0920 31 1 2.4772 1.2356 2.1129 32 1 6.0053 1.9709 3.5049 33 1 4.7927 0.8911 2.7758 34 1 4.2136 3.1305 4.7674 35 1 3.0010 2.0506 4.0382 36 1 4.1371 0.0924 5.0508 37 1 5.3494 1.1728 5.7796 38 1 3.6491 1.2637 6.2987 39 1 7.1352 3.9304 0.7665 40 1 5.5364 3.9998 -0.0480 41 1 6.3067 6.2697 -0.3088 42 1 7.0932 6.2745 1.2994 43 1 6.5239 8.8513 -0.9683 44 1 3.4711 5.0419 1.8982 45 1 4.4202 5.7166 3.2503 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267536821.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:01 Heat of formation + Delta-G solvation = -14.948972 kcal Electronic energy + Delta-G solvation = -22967.655361 eV Core-core repulsion = 19792.484488 eV Total energy + Delta-G solvation = -3175.170873 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.39483 -38.62577 -37.07260 -36.25753 -34.58786 -33.24072 -31.77518 -30.82752 -29.00729 -26.95569 -26.64548 -24.99602 -22.67762 -22.20621 -21.99760 -20.63328 -19.64154 -18.92335 -17.89048 -17.23082 -16.78578 -16.66590 -16.00080 -15.64809 -15.53966 -15.34716 -14.81806 -14.53229 -14.42648 -13.93034 -13.64676 -13.56142 -13.37715 -13.07981 -13.05480 -12.92069 -12.73859 -12.62884 -12.43444 -12.17531 -12.07066 -12.01380 -11.96082 -11.87385 -11.83707 -11.54419 -11.34422 -10.74842 -10.47106 -10.16262 -9.53638 -8.87449 -7.77677 -5.21684 1.41031 1.41706 1.46840 1.52951 1.76145 2.06963 2.49396 3.30504 3.56414 3.75141 3.90284 3.98452 3.99483 4.09023 4.14879 4.24902 4.27560 4.39225 4.45178 4.50653 4.62379 4.64746 4.70372 4.76228 4.80363 4.94786 4.96907 5.00880 5.05888 5.06304 5.10564 5.24774 5.29359 5.31684 5.40663 5.52568 5.63985 5.75739 5.78199 5.82727 5.94681 6.29910 6.56981 7.09735 7.37612 7.77670 8.41993 9.23975 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015880 B = 0.004803 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.768563 B = 5828.764525 C = 6807.916216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C -0.081 4.081 4 C -0.119 4.119 5 C 0.494 3.506 6 O -0.571 6.571 7 N -0.603 5.603 8 C 0.105 3.895 9 C -0.143 4.143 10 C -0.143 4.143 11 C 0.152 3.848 12 H 0.114 0.886 13 C -0.141 4.141 14 C 0.161 3.839 15 N -0.619 5.619 16 C -0.241 4.241 17 H 0.072 0.928 18 C -0.067 4.067 19 N -0.949 5.949 20 Si 0.983 3.017 21 H -0.274 1.274 22 H -0.288 1.288 23 H -0.282 1.282 24 C 0.134 3.866 25 H 0.117 0.883 26 H 0.085 0.915 27 H 0.134 0.866 28 H 0.046 0.954 29 H 0.061 0.939 30 H 0.124 0.876 31 H 0.111 0.889 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.047 0.953 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.083 0.917 40 H 0.061 0.939 41 H 0.065 0.935 42 H -0.005 1.005 43 H 0.247 0.753 44 H 0.013 0.987 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.012 -22.455 9.299 24.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.169 4.169 3 C -0.119 4.119 4 C -0.159 4.159 5 C 0.284 3.716 6 O -0.450 6.450 7 N -0.335 5.335 8 C -0.017 4.017 9 C -0.181 4.181 10 C -0.201 4.201 11 C 0.047 3.953 12 H 0.132 0.868 13 C -0.180 4.180 14 C 0.036 3.964 15 N -0.345 5.345 16 C -0.370 4.370 17 H 0.090 0.910 18 C -0.260 4.260 19 N -0.599 5.599 20 Si 0.810 3.190 21 H -0.200 1.200 22 H -0.213 1.213 23 H -0.208 1.208 24 C 0.008 3.992 25 H 0.135 0.865 26 H 0.103 0.897 27 H 0.151 0.849 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.142 0.858 31 H 0.129 0.871 32 H 0.112 0.888 33 H 0.127 0.873 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.013 0.987 43 H 0.057 0.943 44 H 0.031 0.969 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -4.092 -21.851 8.757 23.894 hybrid contribution -0.368 1.594 -0.381 1.680 sum -4.461 -20.257 8.376 22.370 Atomic orbital electron populations 1.24036 0.96142 1.02328 1.00901 1.22978 0.96077 0.97828 1.00064 1.20454 0.97670 0.95861 0.97911 1.21679 0.98802 0.94136 1.01264 1.21543 0.79609 0.89899 0.80523 1.90804 1.65761 1.49592 1.38822 1.48100 1.39405 1.17421 1.28577 1.22015 1.00889 0.91792 0.86977 1.21958 0.99798 1.00043 0.96346 1.21658 1.02158 0.98669 0.97571 1.21875 0.92577 0.82570 0.98231 0.86823 1.23192 0.99941 0.97131 0.97748 1.21593 0.86222 0.89648 0.98942 1.44592 1.25118 1.14025 1.50767 1.19370 1.04729 0.91239 1.21645 0.91008 1.25653 0.98230 1.02502 0.99582 1.70070 1.20268 1.35828 1.33694 0.85095 0.77263 0.78932 0.77688 1.19977 1.21349 1.20849 1.21569 0.96318 0.89107 0.92215 0.86478 0.89705 0.84873 0.93529 0.92088 0.85762 0.87054 0.88843 0.87347 0.93402 0.92269 0.90948 0.91971 0.92597 0.89821 0.92084 0.91671 0.98711 0.94312 0.96871 0.96431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.27 14.32 67.78 0.97 -2.30 16 2 C -0.15 -2.57 9.52 25.65 0.24 -2.32 16 3 C -0.08 -1.91 4.95 29.85 0.15 -1.76 16 4 C -0.12 -2.41 4.23 29.84 0.13 -2.28 16 5 C 0.49 15.65 6.78 87.65 0.59 16.24 16 6 O -0.57 -25.44 12.33 -3.06 -0.04 -25.48 16 7 N -0.60 -16.87 2.54 -791.25 -2.01 -18.88 16 8 C 0.10 1.72 5.20 86.38 0.45 2.17 16 9 C -0.14 -2.30 6.26 30.59 0.19 -2.11 16 10 C -0.14 -1.52 9.91 71.98 0.71 -0.81 16 11 C 0.15 5.52 3.45 46.18 0.16 5.68 16 12 H 0.11 3.51 7.86 -2.39 -0.02 3.49 16 13 C -0.14 -5.97 6.40 31.98 0.20 -5.77 16 14 C 0.16 8.77 5.89 86.85 0.51 9.29 16 15 N -0.62 -35.69 3.39 -691.99 -2.35 -38.04 16 16 C -0.24 -14.94 10.27 84.03 0.86 -14.08 16 17 H 0.07 4.33 7.83 -2.91 -0.02 4.31 16 18 C -0.07 -4.13 5.49 84.86 0.47 -3.66 16 19 N -0.95 -60.41 10.09 21.65 0.22 -60.19 16 20 Si 0.98 48.96 29.55 68.60 2.03 50.99 16 21 H -0.27 -12.99 7.11 99.48 0.71 -12.29 16 22 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 23 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 24 C 0.13 6.33 6.49 86.73 0.56 6.90 16 25 H 0.12 1.43 8.06 -2.91 -0.02 1.40 16 26 H 0.08 1.59 7.84 -2.91 -0.02 1.57 16 27 H 0.13 1.58 8.06 -2.91 -0.02 1.56 16 28 H 0.05 1.34 7.75 -2.39 -0.02 1.32 16 29 H 0.06 1.65 8.10 -2.39 -0.02 1.64 16 30 H 0.12 1.66 7.40 -2.38 -0.02 1.64 16 31 H 0.11 1.80 7.18 -2.39 -0.02 1.79 16 32 H 0.09 1.31 7.94 -2.39 -0.02 1.29 16 33 H 0.11 1.14 6.44 -2.39 -0.02 1.13 16 34 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 1.01 7.22 -2.39 -0.02 0.99 16 36 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 40 H 0.06 2.90 5.82 -2.39 -0.01 2.88 16 41 H 0.07 4.08 5.87 -2.39 -0.01 4.06 16 42 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 43 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 44 H 0.01 0.68 6.28 -2.38 -0.01 0.67 16 45 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -79.92 353.32 4.99 -74.93 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.94 Total: 11.49 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 6.20 Total: 5.18 kcal Atomic # 7 Polarization: -112.97 SS G_CDS: -4.14 Total: -117.11 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.04 Total: -25.48 kcal Atomic # 14 Polarization: 48.96 SS G_CDS: 2.03 Total: 50.99 kcal Total: -79.92 4.99 -74.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267536821.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.982 kcal (2) G-P(sol) polarization free energy of solvation -79.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds