Wall clock time and date at job start Tue Mar 31 2020 01:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47089 * 2 1 4 4 H 1.08994 * 109.46887 * 305.00169 * 3 2 1 5 5 C 1.52999 * 109.47200 * 184.99849 * 3 2 1 6 6 N 1.46497 * 109.46992 * 184.99961 * 5 3 2 7 7 C 1.34777 * 119.99525 * 179.97438 * 6 5 3 8 8 O 1.21283 * 120.00463 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99675 * 179.72583 * 7 6 5 10 10 C 1.53004 * 109.47208 * 180.27843 * 9 7 6 11 11 H 1.08996 * 109.35426 * 304.99921 * 10 9 7 12 12 C 1.50071 * 109.35692 * 64.72149 * 10 9 7 13 13 C 1.29442 * 124.07328 * 137.36480 * 12 10 9 14 14 C 1.50064 * 124.07830 * 359.50214 * 13 12 10 15 15 C 1.53031 * 110.14397 * 17.13746 * 14 13 12 16 16 C 1.53014 * 109.35984 * 185.27390 * 10 9 7 17 17 N 1.46501 * 109.47053 * 64.99834 * 3 2 1 18 18 C 1.36938 * 120.00226 * 275.00057 * 17 3 2 19 19 H 1.08003 * 119.99566 * 359.97438 * 18 17 3 20 20 C 1.38807 * 120.00578 * 180.02562 * 18 17 3 21 21 N 1.31630 * 119.99516 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 120.00700 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46883 * 59.99698 * 22 20 18 24 24 H 1.48496 * 109.47523 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47194 * 300.00466 * 22 20 18 26 26 H 1.09003 * 109.47104 * 60.00241 * 1 2 3 27 27 H 1.09002 * 109.47466 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47344 * 300.00217 * 1 2 3 29 29 H 1.08996 * 109.47119 * 240.00114 * 2 1 3 30 30 H 1.09004 * 109.46668 * 120.00070 * 2 1 3 31 31 H 1.08995 * 109.46838 * 64.99849 * 5 3 2 32 32 H 1.09001 * 109.46617 * 305.00184 * 5 3 2 33 33 H 0.97000 * 120.00580 * 0.02562 * 6 5 3 34 34 H 1.09009 * 109.47352 * 300.27556 * 9 7 6 35 35 H 1.08998 * 109.47585 * 60.27844 * 9 7 6 36 36 H 1.08005 * 117.96397 * 317.34070 * 12 10 9 37 37 H 1.08005 * 117.95947 * 179.48764 * 13 12 10 38 38 H 1.08999 * 109.35835 * 137.33777 * 14 13 12 39 39 H 1.08997 * 109.36304 * 257.06952 * 14 13 12 40 40 H 1.08996 * 109.64034 * 70.24550 * 15 14 13 41 41 H 1.09004 * 109.64192 * 190.66700 * 15 14 13 42 42 H 1.09002 * 109.64730 * 310.04729 * 16 10 9 43 43 H 1.09008 * 109.64006 * 70.67314 * 16 10 9 44 44 H 0.96996 * 119.99960 * 95.00040 * 17 3 2 45 45 H 0.97001 * 119.99721 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4444 -0.1257 6 7 4.0630 2.8168 -0.0059 7 6 5.3857 3.0629 -0.0858 8 8 6.1635 2.1483 -0.2572 9 6 5.8977 4.4754 0.0313 10 6 7.4221 4.4779 -0.0994 11 1 7.8489 3.7973 0.6373 12 6 7.8040 4.0224 -1.4774 13 6 8.7299 4.5752 -2.1933 14 6 9.5436 5.7555 -1.7498 15 6 9.4342 5.9312 -0.2336 16 6 7.9504 5.8920 0.1504 17 7 1.6524 2.0975 1.2518 18 6 0.4156 2.6735 1.3688 19 1 -0.2740 2.6452 0.5380 20 6 0.0484 3.2945 2.5547 21 7 0.8891 3.3294 3.5670 22 14 -1.6384 4.0809 2.7141 23 1 -2.6868 3.0491 2.5100 24 1 -1.7832 4.6717 4.0687 25 1 -1.7866 5.1463 1.6903 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8499 1.0377 -1.0959 32 1 3.9953 0.8311 0.6660 33 1 3.4410 3.5484 0.1316 34 1 5.4642 5.0859 -0.7610 35 1 5.6155 4.8851 1.0011 36 1 7.2735 3.1807 -1.8977 37 1 8.9294 4.1610 -3.1707 38 1 10.5875 5.5970 -2.0207 39 1 9.1748 6.6546 -2.2432 40 1 9.9655 5.1226 0.2683 41 1 9.8663 6.8890 0.0564 42 1 7.3935 6.6042 -0.4586 43 1 7.8406 6.1431 1.2055 44 1 2.2719 2.1232 1.9978 45 1 0.6327 3.7637 4.3955 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267810057.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:42 Heat of formation + Delta-G solvation = -41.685612 kcal Electronic energy + Delta-G solvation = -22102.392101 eV Core-core repulsion = 18926.061841 eV Total energy + Delta-G solvation = -3176.330260 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -39.78212 -38.21072 -36.63796 -33.64208 -32.66547 -32.33095 -31.01894 -29.78909 -28.42488 -26.70883 -23.77303 -22.79777 -22.29933 -21.74154 -20.15696 -19.56869 -17.94858 -17.36384 -16.57962 -16.05232 -15.51068 -15.39468 -14.81556 -14.27395 -14.13016 -13.85625 -13.48015 -13.26224 -13.03901 -12.83960 -12.71510 -12.60347 -12.21576 -12.12030 -12.08572 -11.49127 -11.37018 -10.96606 -10.92352 -10.89121 -10.74542 -10.56984 -10.44488 -10.21532 -10.13102 -10.03617 -9.55430 -9.37537 -8.96388 -8.94526 -8.56478 -7.05203 -5.83300 -3.12511 2.37681 3.02310 3.38388 3.44028 3.44857 3.64390 4.52605 4.64703 4.69019 4.78241 5.05714 5.14780 5.28743 5.40044 5.42107 5.43309 5.46606 5.53239 5.56305 5.66292 5.69067 5.81199 5.81819 5.87401 5.92471 5.96130 5.97815 6.03588 6.17678 6.29649 6.33597 6.42702 6.55166 6.57661 6.60962 6.75992 6.93828 7.01171 7.04334 7.23381 7.64033 8.00258 8.34196 8.64436 9.45986 10.01204 10.37268 11.38500 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020202 B = 0.003659 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.635724 B = 7649.595298 C = 8681.064095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.053 0.947 5 C 0.115 3.885 6 N -0.714 5.714 7 C 0.509 3.491 8 O -0.555 6.555 9 C -0.135 4.135 10 C -0.042 4.042 11 H 0.088 0.912 12 C -0.128 4.128 13 C -0.177 4.177 14 C -0.088 4.088 15 C -0.120 4.120 16 C -0.117 4.117 17 N -0.721 5.721 18 C -0.238 4.238 19 H 0.072 0.928 20 C -0.011 4.011 21 N -0.930 5.930 22 Si 0.903 3.097 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.286 1.286 26 H 0.039 0.961 27 H 0.032 0.968 28 H 0.084 0.916 29 H 0.042 0.958 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.410 0.590 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.385 0.615 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.485 3.719 -9.244 15.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.071 0.929 5 C -0.010 4.010 6 N -0.365 5.365 7 C 0.296 3.704 8 O -0.434 6.434 9 C -0.175 4.175 10 C -0.061 4.061 11 H 0.106 0.894 12 C -0.146 4.146 13 C -0.195 4.195 14 C -0.125 4.125 15 C -0.157 4.157 16 C -0.154 4.154 17 N -0.363 5.363 18 C -0.369 4.369 19 H 0.090 0.910 20 C -0.207 4.207 21 N -0.578 5.578 22 Si 0.734 3.266 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.213 1.213 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.103 0.897 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.246 0.754 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.129 0.871 37 H 0.116 0.884 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.846 3.142 -9.377 16.211 hybrid contribution -1.208 0.596 0.448 1.419 sum 11.638 3.738 -8.928 15.137 Atomic orbital electron populations 1.21772 0.95749 0.99627 1.03229 1.22071 0.96942 0.98477 0.99986 1.20559 0.90059 0.92727 0.91365 0.92935 1.21633 0.95510 0.82948 1.00884 1.46030 1.07294 1.10660 1.72510 1.20608 0.82374 0.91211 0.76246 1.90649 1.55989 1.46731 1.50005 1.21699 0.96408 0.94829 1.04551 1.19825 0.93449 0.96637 0.96175 0.89444 1.22233 0.97603 0.99245 0.95476 1.21979 0.98859 0.98729 0.99944 1.20420 0.99236 0.96942 0.95915 1.21584 0.96651 1.01654 0.95855 1.21667 0.95925 0.96344 1.01503 1.42446 1.16741 1.65858 1.11304 1.19163 0.91987 1.27777 0.97975 0.90989 1.24728 0.98044 1.01571 0.96372 1.69656 1.35244 1.48893 1.03994 0.86334 0.84260 0.79227 0.76745 1.21297 1.21782 1.21302 0.94136 0.94891 0.89674 0.93893 0.92554 0.92083 0.91991 0.75377 0.89050 0.88452 0.87116 0.88400 0.91617 0.91332 0.91763 0.91829 0.91562 0.91481 0.78095 0.93450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.18 37.16 0.34 -2.27 16 2 C -0.13 -2.32 5.61 -26.73 -0.15 -2.47 16 3 C 0.16 3.00 2.59 -67.93 -0.18 2.82 16 4 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 5 C 0.11 1.95 5.23 -4.04 -0.02 1.93 16 6 N -0.71 -11.66 5.39 -60.30 -0.32 -11.98 16 7 C 0.51 8.14 7.46 -10.98 -0.08 8.06 16 8 O -0.55 -10.37 14.27 5.55 0.08 -10.29 16 9 C -0.13 -1.69 5.14 -27.88 -0.14 -1.83 16 10 C -0.04 -0.52 2.12 -92.07 -0.19 -0.71 16 11 H 0.09 1.19 7.95 -51.93 -0.41 0.78 16 12 C -0.13 -1.63 8.41 -35.90 -0.30 -1.93 16 13 C -0.18 -1.97 9.80 -35.90 -0.35 -2.32 16 14 C -0.09 -0.81 6.11 -28.17 -0.17 -0.98 16 15 C -0.12 -1.09 6.02 -26.55 -0.16 -1.25 16 16 C -0.12 -1.16 5.29 -26.56 -0.14 -1.30 16 17 N -0.72 -16.29 4.51 -53.43 -0.24 -16.53 16 18 C -0.24 -5.98 7.75 -15.06 -0.12 -6.10 16 19 H 0.07 1.77 7.32 -52.48 -0.38 1.39 16 20 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 21 N -0.93 -26.50 13.06 55.49 0.72 -25.78 16 22 Si 0.90 21.30 29.55 -169.99 -5.02 16.27 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 1.80 5.99 -51.93 -0.31 1.48 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.41 6.76 8.14 -40.82 -0.33 6.43 16 34 H 0.09 1.02 8.14 -51.92 -0.42 0.59 16 35 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.11 1.63 6.51 -52.48 -0.34 1.29 16 37 H 0.10 1.01 8.06 -52.48 -0.42 0.59 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.62 8.12 -51.93 -0.42 0.19 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 43 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 44 H 0.38 9.54 7.80 -40.82 -0.32 9.22 16 45 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 356.40 15.07 5.37 5.37 Total: -1.00 -28.44 356.40 -9.17 -37.61 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: -7.99 Total: 14.07 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -1.77 Total: -8.74 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: 0.16 Total: -54.29 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.08 Total: -10.29 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.44 -9.17 -37.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267810057.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.076 kcal (2) G-P(sol) polarization free energy of solvation -28.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds