Wall clock time and date at job start Tue Mar 31 2020 01:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47089 * 2 1 4 4 H 1.08994 * 109.46887 * 305.00169 * 3 2 1 5 5 C 1.52999 * 109.47200 * 184.99849 * 3 2 1 6 6 N 1.46497 * 109.46992 * 184.99961 * 5 3 2 7 7 C 1.34777 * 119.99525 * 179.97438 * 6 5 3 8 8 O 1.21283 * 120.00463 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99675 * 179.72583 * 7 6 5 10 10 C 1.53004 * 109.47208 * 180.27843 * 9 7 6 11 11 H 1.08996 * 109.35426 * 304.99921 * 10 9 7 12 12 C 1.50071 * 109.35692 * 64.72149 * 10 9 7 13 13 C 1.29442 * 124.07328 * 137.36480 * 12 10 9 14 14 C 1.50064 * 124.07830 * 359.50214 * 13 12 10 15 15 C 1.53031 * 110.14397 * 17.13746 * 14 13 12 16 16 C 1.53014 * 109.35984 * 185.27390 * 10 9 7 17 17 N 1.46501 * 109.47053 * 64.99834 * 3 2 1 18 18 C 1.36938 * 120.00226 * 275.00057 * 17 3 2 19 19 H 1.08003 * 119.99566 * 359.97438 * 18 17 3 20 20 C 1.38807 * 120.00578 * 180.02562 * 18 17 3 21 21 N 1.31630 * 119.99516 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 120.00700 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46883 * 59.99698 * 22 20 18 24 24 H 1.48496 * 109.47523 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47194 * 300.00466 * 22 20 18 26 26 H 1.09003 * 109.47104 * 60.00241 * 1 2 3 27 27 H 1.09002 * 109.47466 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47344 * 300.00217 * 1 2 3 29 29 H 1.08996 * 109.47119 * 240.00114 * 2 1 3 30 30 H 1.09004 * 109.46668 * 120.00070 * 2 1 3 31 31 H 1.08995 * 109.46838 * 64.99849 * 5 3 2 32 32 H 1.09001 * 109.46617 * 305.00184 * 5 3 2 33 33 H 0.97000 * 120.00580 * 0.02562 * 6 5 3 34 34 H 1.09009 * 109.47352 * 300.27556 * 9 7 6 35 35 H 1.08998 * 109.47585 * 60.27844 * 9 7 6 36 36 H 1.08005 * 117.96397 * 317.34070 * 12 10 9 37 37 H 1.08005 * 117.95947 * 179.48764 * 13 12 10 38 38 H 1.08999 * 109.35835 * 137.33777 * 14 13 12 39 39 H 1.08997 * 109.36304 * 257.06952 * 14 13 12 40 40 H 1.08996 * 109.64034 * 70.24550 * 15 14 13 41 41 H 1.09004 * 109.64192 * 190.66700 * 15 14 13 42 42 H 1.09002 * 109.64730 * 310.04729 * 16 10 9 43 43 H 1.09008 * 109.64006 * 70.67314 * 16 10 9 44 44 H 0.96996 * 119.99960 * 95.00040 * 17 3 2 45 45 H 0.97001 * 119.99721 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4444 -0.1257 6 7 4.0630 2.8168 -0.0059 7 6 5.3857 3.0629 -0.0858 8 8 6.1635 2.1483 -0.2572 9 6 5.8977 4.4754 0.0313 10 6 7.4221 4.4779 -0.0994 11 1 7.8489 3.7973 0.6373 12 6 7.8040 4.0224 -1.4774 13 6 8.7299 4.5752 -2.1933 14 6 9.5436 5.7555 -1.7498 15 6 9.4342 5.9312 -0.2336 16 6 7.9504 5.8920 0.1504 17 7 1.6524 2.0975 1.2518 18 6 0.4156 2.6735 1.3688 19 1 -0.2740 2.6452 0.5380 20 6 0.0484 3.2945 2.5547 21 7 0.8891 3.3294 3.5670 22 14 -1.6384 4.0809 2.7141 23 1 -2.6868 3.0491 2.5100 24 1 -1.7832 4.6717 4.0687 25 1 -1.7866 5.1463 1.6903 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8499 1.0377 -1.0959 32 1 3.9953 0.8311 0.6660 33 1 3.4410 3.5484 0.1316 34 1 5.4642 5.0859 -0.7610 35 1 5.6155 4.8851 1.0011 36 1 7.2735 3.1807 -1.8977 37 1 8.9294 4.1610 -3.1707 38 1 10.5875 5.5970 -2.0207 39 1 9.1748 6.6546 -2.2432 40 1 9.9655 5.1226 0.2683 41 1 9.8663 6.8890 0.0564 42 1 7.3935 6.6042 -0.4586 43 1 7.8406 6.1431 1.2055 44 1 2.2719 2.1232 1.9978 45 1 0.6327 3.7637 4.3955 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267810057.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:41 Heat of formation + Delta-G solvation = -57.957812 kcal Electronic energy + Delta-G solvation = -22103.097717 eV Core-core repulsion = 18926.061841 eV Total energy + Delta-G solvation = -3177.035876 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.98709 -39.23959 -38.15727 -35.17860 -34.14339 -33.54885 -31.85258 -31.50253 -29.83106 -27.86318 -25.53226 -24.16005 -23.15921 -22.78902 -21.62680 -20.92110 -19.21389 -18.82064 -17.85852 -17.15616 -16.91637 -16.71358 -16.22816 -15.78449 -15.30530 -15.06936 -14.78355 -14.62269 -14.54180 -14.05773 -13.86075 -13.60566 -13.48535 -13.19673 -12.98771 -12.93857 -12.78323 -12.73159 -12.36810 -12.36540 -12.12516 -11.87558 -11.71350 -11.62301 -11.40952 -11.33040 -11.02564 -10.89476 -10.59418 -9.94945 -9.84116 -8.96605 -7.86377 -5.13598 1.44996 1.51929 1.52907 1.58362 1.74402 2.37887 2.61181 3.47138 3.73676 3.83791 3.88441 3.94486 3.97602 4.08296 4.30668 4.37973 4.43619 4.48148 4.52472 4.53994 4.56624 4.72107 4.76100 4.82876 4.86344 4.88364 4.93764 5.09545 5.09963 5.11598 5.13969 5.20782 5.24434 5.45141 5.49629 5.51825 5.60391 5.63052 5.71712 5.84810 6.11643 6.33673 6.67905 7.34262 7.41654 8.13188 8.38616 9.36290 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020202 B = 0.003659 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.635724 B = 7649.595298 C = 8681.064095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.166 3.834 4 H 0.058 0.942 5 C 0.123 3.877 6 N -0.714 5.714 7 C 0.506 3.494 8 O -0.584 6.584 9 C -0.128 4.128 10 C -0.038 4.038 11 H 0.065 0.935 12 C -0.153 4.153 13 C -0.164 4.164 14 C -0.089 4.089 15 C -0.120 4.120 16 C -0.114 4.114 17 N -0.727 5.727 18 C -0.218 4.218 19 H 0.079 0.921 20 C -0.071 4.071 21 N -0.968 5.968 22 Si 0.960 3.040 23 H -0.284 1.284 24 H -0.303 1.303 25 H -0.278 1.278 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.073 0.927 30 H 0.044 0.956 31 H 0.075 0.925 32 H 0.046 0.954 33 H 0.410 0.590 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.055 0.945 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.372 0.628 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.809 4.676 -10.897 17.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.057 3.943 4 H 0.076 0.924 5 C -0.002 4.002 6 N -0.365 5.365 7 C 0.294 3.706 8 O -0.465 6.465 9 C -0.168 4.168 10 C -0.057 4.057 11 H 0.083 0.917 12 C -0.171 4.171 13 C -0.182 4.182 14 C -0.126 4.126 15 C -0.158 4.158 16 C -0.151 4.151 17 N -0.368 5.368 18 C -0.350 4.350 19 H 0.097 0.903 20 C -0.264 4.264 21 N -0.619 5.619 22 Si 0.790 3.210 23 H -0.211 1.211 24 H -0.230 1.230 25 H -0.204 1.204 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.246 0.754 34 H 0.128 0.872 35 H 0.124 0.876 36 H 0.102 0.898 37 H 0.122 0.878 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.074 0.926 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.204 0.796 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 13.160 4.087 -11.083 17.684 hybrid contribution -1.251 0.206 0.840 1.521 sum 11.908 4.292 -10.243 16.283 Atomic orbital electron populations 1.21699 0.95908 1.00584 1.01816 1.21998 0.96689 0.97495 1.00914 1.20690 0.90953 0.93152 0.89500 0.92397 1.21499 0.94324 0.83358 1.00994 1.46057 1.07600 1.10326 1.72550 1.21224 0.81825 0.92397 0.75159 1.90633 1.56566 1.48039 1.51288 1.21737 0.96859 0.92574 1.05627 1.19770 0.92938 0.97750 0.95251 0.91724 1.22101 0.99090 0.99589 0.96296 1.22248 0.97573 0.98613 0.99720 1.20500 0.99667 0.96387 0.96030 1.21608 0.95958 1.02427 0.95765 1.21663 0.96587 0.94663 1.02183 1.42559 1.15788 1.66103 1.12316 1.19461 0.92520 1.25496 0.97532 0.90287 1.25365 1.00956 1.03444 0.96604 1.69806 1.36856 1.50907 1.04304 0.85415 0.80997 0.78504 0.76057 1.21052 1.23013 1.20393 0.93128 0.92896 0.93279 0.90807 0.93737 0.90691 0.93544 0.75362 0.87210 0.87567 0.89751 0.87817 0.90189 0.89850 0.92637 0.89819 0.90646 0.90807 0.79574 0.94425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.83 9.18 71.98 0.66 -4.17 16 2 C -0.13 -4.29 5.61 30.60 0.17 -4.12 16 3 C 0.17 5.92 2.59 44.99 0.12 6.04 16 4 H 0.06 2.04 8.08 -2.39 -0.02 2.02 16 5 C 0.12 4.12 5.23 86.38 0.45 4.57 16 6 N -0.71 -23.20 5.39 -463.07 -2.49 -25.69 16 7 C 0.51 16.24 7.46 87.66 0.65 16.90 16 8 O -0.58 -22.32 14.27 -3.04 -0.04 -22.36 16 9 C -0.13 -3.14 5.14 29.85 0.15 -2.99 16 10 C -0.04 -0.92 2.12 -11.73 -0.02 -0.95 16 11 H 0.06 1.82 7.95 -2.39 -0.02 1.80 16 12 C -0.15 -3.87 8.41 27.04 0.23 -3.65 16 13 C -0.16 -3.41 9.80 27.04 0.27 -3.15 16 14 C -0.09 -1.40 6.11 29.66 0.18 -1.22 16 15 C -0.12 -1.92 6.02 30.71 0.18 -1.73 16 16 C -0.11 -2.04 5.29 30.71 0.16 -1.88 16 17 N -0.73 -32.79 4.51 -322.94 -1.46 -34.25 16 18 C -0.22 -10.88 7.75 84.03 0.65 -10.23 16 19 H 0.08 3.79 7.32 -2.91 -0.02 3.76 16 20 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 21 N -0.97 -56.18 13.06 21.65 0.28 -55.90 16 22 Si 0.96 43.96 29.55 68.60 2.03 45.99 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 24 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 25 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 26 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.05 2.02 5.99 -2.39 -0.01 2.00 16 29 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.41 13.37 8.14 -92.71 -0.75 12.61 16 34 H 0.11 2.28 8.14 -2.38 -0.02 2.26 16 35 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.08 2.57 6.51 -2.91 -0.02 2.55 16 37 H 0.10 2.00 8.06 -2.91 -0.02 1.98 16 38 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.05 0.98 8.12 -2.39 -0.02 0.96 16 41 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.07 1.23 8.10 -2.39 -0.02 1.21 16 43 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 44 H 0.37 18.75 7.80 -92.71 -0.72 18.02 16 45 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -61.41 356.40 2.12 -59.29 By element: Atomic # 1 Polarization: 43.39 SS G_CDS: -0.52 Total: 42.87 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: 4.32 Total: -9.95 kcal Atomic # 7 Polarization: -112.17 SS G_CDS: -3.67 Total: -115.84 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.04 Total: -22.36 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -61.41 2.12 -59.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267810057.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.332 kcal (2) G-P(sol) polarization free energy of solvation -61.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds