Wall clock time and date at job start Tue Mar 31 2020 01:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50704 * 119.99953 * 2 1 4 4 C 1.52995 * 109.46880 * 125.00482 * 3 2 1 5 5 C 1.50708 * 112.85150 * 297.81563 * 4 3 2 6 6 O 1.21284 * 119.99697 * 110.20204 * 5 4 3 7 7 N 1.34768 * 119.99996 * 290.20775 * 5 4 3 8 8 C 1.46497 * 120.00203 * 174.77920 * 7 5 4 9 9 C 1.52995 * 109.47658 * 179.97438 * 8 7 5 10 10 H 1.08998 * 109.47036 * 295.00144 * 9 8 7 11 11 C 1.53003 * 109.47521 * 174.99757 * 9 8 7 12 12 C 1.52996 * 109.47081 * 174.99930 * 11 9 8 13 13 N 1.46501 * 109.47110 * 54.99932 * 9 8 7 14 14 C 1.36940 * 120.00326 * 205.00325 * 13 9 8 15 15 H 1.08002 * 119.99606 * 359.97438 * 14 13 9 16 16 C 1.38809 * 120.00176 * 179.97438 * 14 13 9 17 17 N 1.31620 * 119.99838 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00210 * 359.97438 * 16 14 13 19 19 H 1.48505 * 109.46932 * 89.99783 * 18 16 14 20 20 H 1.48493 * 109.47489 * 210.00104 * 18 16 14 21 21 H 1.48503 * 109.46795 * 330.00126 * 18 16 14 22 22 C 1.53784 * 113.69167 * 69.08410 * 4 3 2 23 23 C 1.53781 * 87.07878 * 89.12834 * 22 4 3 24 24 C 1.53781 * 113.61462 * 166.62313 * 4 3 2 25 25 H 1.07994 * 119.99481 * 179.97438 * 1 2 3 26 26 H 1.07994 * 119.99975 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.00170 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.46433 * 5.00842 * 3 2 1 29 29 H 1.08993 * 109.47152 * 245.00769 * 3 2 1 30 30 H 0.97001 * 120.00383 * 355.05121 * 7 5 4 31 31 H 1.09002 * 109.47206 * 299.99929 * 8 7 5 32 32 H 1.09003 * 109.47027 * 59.99427 * 8 7 5 33 33 H 1.09000 * 109.47051 * 295.00072 * 11 9 8 34 34 H 1.08997 * 109.46814 * 54.99965 * 11 9 8 35 35 H 1.09000 * 109.47294 * 299.99993 * 12 11 9 36 36 H 1.08997 * 109.47269 * 60.00313 * 12 11 9 37 37 H 1.09000 * 109.46865 * 179.97438 * 12 11 9 38 38 H 0.97006 * 120.00288 * 24.99520 * 13 9 8 39 39 H 0.97002 * 119.99917 * 179.97438 * 17 16 14 40 40 H 1.09000 * 113.61301 * 203.67195 * 22 4 3 41 41 H 1.09002 * 113.61213 * 334.58200 * 22 4 3 42 42 H 1.09005 * 113.61013 * 270.88315 * 23 22 4 43 43 H 1.08992 * 113.61664 * 139.98334 * 23 22 4 44 44 H 1.09000 * 113.61321 * 25.34534 * 24 4 3 45 45 H 1.08998 * 113.61483 * 156.25164 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1815 5 6 2.3373 1.2557 2.5151 6 8 2.4369 0.2559 3.1945 7 7 1.6025 2.2973 2.9525 8 6 0.8319 2.1805 4.1929 9 6 0.0940 3.4937 4.4606 10 1 0.8188 4.2867 4.6450 11 6 -0.8075 3.3317 5.6862 12 6 -1.4495 4.6776 6.0286 13 7 -0.7236 3.8408 3.2955 14 6 -1.0585 5.1473 3.0587 15 1 -0.7202 5.9218 3.7311 16 6 -1.8327 5.4761 1.9545 17 7 -2.1542 6.7320 1.7266 18 14 -2.4172 4.1366 0.7911 19 1 -3.7329 3.6224 1.2494 20 1 -2.5535 4.6948 -0.5781 21 1 -1.4298 3.0274 0.7775 22 6 4.2069 0.3470 1.0414 23 6 4.9664 1.4741 0.3218 24 6 4.0768 2.4611 1.0960 25 1 -0.5399 -0.9353 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3585 2.1316 0.0897 29 1 2.6212 1.4027 -0.9314 30 1 1.5806 3.1230 2.4440 31 1 0.1090 1.3703 4.0967 32 1 1.5073 1.9682 5.0217 33 1 -1.5875 2.6017 5.4695 34 1 -0.2124 2.9873 6.5319 35 1 -0.6696 5.4075 6.2452 36 1 -2.0447 5.0219 5.1828 37 1 -2.0921 4.5620 6.9014 38 1 -1.0277 3.1451 2.6917 39 1 -2.6949 6.9618 0.9548 40 1 4.6520 0.0596 1.9940 41 1 3.9846 -0.5072 0.4019 42 1 4.8031 1.4918 -0.7558 43 1 6.0207 1.5320 0.5921 44 1 3.7495 3.3134 0.5007 45 1 4.4863 2.7515 2.0635 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269465921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:33 Heat of formation + Delta-G solvation = -1.087997 kcal Electronic energy + Delta-G solvation = -23215.618796 eV Core-core repulsion = 20041.048980 eV Total energy + Delta-G solvation = -3174.569816 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.59269 -37.98494 -36.65013 -34.27620 -33.70830 -32.35059 -30.29212 -28.97352 -27.71692 -25.73704 -24.89671 -23.31414 -22.35927 -20.63402 -20.13648 -19.95571 -18.52059 -17.67314 -16.95762 -15.73506 -15.63252 -15.43870 -14.73727 -14.42370 -14.11236 -14.07301 -13.79106 -13.20918 -13.09551 -12.87780 -12.67493 -12.44416 -12.33842 -12.01019 -11.86990 -11.54062 -11.19809 -11.15960 -11.10945 -10.99983 -10.72171 -10.57044 -10.43095 -10.31846 -10.23150 -10.00855 -9.51718 -9.44326 -9.17645 -8.98693 -8.67590 -7.36403 -5.83920 -3.19672 2.34633 2.91017 3.28977 3.34388 3.40267 3.54338 4.33333 4.47079 4.51686 4.69724 4.70207 5.06156 5.14148 5.20910 5.26142 5.33485 5.42067 5.43730 5.50860 5.66844 5.73302 5.78474 5.81469 5.85872 5.88800 5.91126 5.93115 6.04492 6.09664 6.11219 6.28023 6.30862 6.48037 6.53909 6.58557 6.70567 6.82746 6.85043 6.94243 7.27758 7.90594 7.92290 8.34301 8.54957 9.12586 9.84941 10.04863 11.33715 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014895 B = 0.006229 C = 0.005287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.330517 B = 4494.238768 C = 5294.967772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.154 4.154 3 C -0.067 4.067 4 C -0.100 4.100 5 C 0.529 3.471 6 O -0.552 6.552 7 N -0.714 5.714 8 C 0.112 3.888 9 C 0.169 3.831 10 H 0.062 0.938 11 C -0.133 4.133 12 C -0.147 4.147 13 N -0.746 5.746 14 C -0.240 4.240 15 H 0.094 0.906 16 C 0.007 3.993 17 N -0.931 5.931 18 Si 0.879 3.121 19 H -0.286 1.286 20 H -0.293 1.293 21 H -0.275 1.275 22 C -0.110 4.110 23 C -0.141 4.141 24 C -0.129 4.129 25 H 0.096 0.904 26 H 0.099 0.901 27 H 0.108 0.892 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.409 0.591 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.054 0.946 34 H 0.045 0.955 35 H 0.042 0.958 36 H 0.087 0.913 37 H 0.032 0.968 38 H 0.362 0.638 39 H 0.259 0.741 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.913 -10.568 -1.717 15.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.172 4.172 3 C -0.104 4.104 4 C -0.103 4.103 5 C 0.314 3.686 6 O -0.430 6.430 7 N -0.365 5.365 8 C -0.013 4.013 9 C 0.059 3.941 10 H 0.080 0.920 11 C -0.173 4.173 12 C -0.204 4.204 13 N -0.389 5.389 14 C -0.370 4.370 15 H 0.112 0.888 16 C -0.189 4.189 17 N -0.578 5.578 18 Si 0.710 3.290 19 H -0.213 1.213 20 H -0.219 1.219 21 H -0.202 1.202 22 C -0.148 4.148 23 C -0.178 4.178 24 C -0.166 4.166 25 H 0.114 0.886 26 H 0.117 0.883 27 H 0.126 0.874 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.245 0.755 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.106 0.894 37 H 0.051 0.949 38 H 0.195 0.805 39 H 0.069 0.931 40 H 0.106 0.894 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.088 0.912 44 H 0.097 0.903 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.936 -11.005 -1.219 15.562 hybrid contribution -0.767 -0.506 -1.045 1.391 sum 10.169 -11.510 -2.264 15.525 Atomic orbital electron populations 1.23946 0.96091 1.02085 1.00382 1.22788 0.95861 0.98080 1.00488 1.20521 0.97198 0.96550 0.96173 1.22080 0.94852 1.00009 0.93368 1.20274 0.78438 0.82827 0.87015 1.90636 1.62734 1.31727 1.57902 1.45990 1.47488 1.16899 1.26162 1.21692 0.94319 0.99087 0.86172 1.20538 0.92113 0.93268 0.88177 0.92034 1.22036 0.99348 0.98358 0.97604 1.21777 1.00541 0.96538 1.01576 1.42818 1.62444 1.06236 1.27439 1.19057 1.26632 0.83373 1.07942 0.88781 1.24651 1.00308 0.95566 0.98393 1.69691 1.42328 1.15617 1.30213 0.86654 0.79044 0.82011 0.81326 1.21282 1.21912 1.20154 1.22812 0.94326 0.96375 1.01288 1.22837 0.98909 0.96442 0.99613 1.22991 0.95685 0.96480 1.01459 0.88610 0.88314 0.87403 0.90310 0.89864 0.75510 0.92149 0.91619 0.92707 0.93589 0.93890 0.89370 0.94884 0.80534 0.93063 0.89361 0.91035 0.89920 0.91176 0.90277 0.89582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.62 14.32 29.01 0.42 -2.21 16 2 C -0.15 -2.03 8.67 -36.03 -0.31 -2.34 16 3 C -0.07 -0.84 5.03 -27.88 -0.14 -0.98 16 4 C -0.10 -1.27 0.78 -154.84 -0.12 -1.39 16 5 C 0.53 8.45 6.19 -10.99 -0.07 8.38 16 6 O -0.55 -10.46 16.27 5.55 0.09 -10.37 16 7 N -0.71 -11.40 5.38 -60.30 -0.32 -11.73 16 8 C 0.11 1.82 5.24 -4.05 -0.02 1.80 16 9 C 0.17 2.98 2.59 -67.93 -0.18 2.80 16 10 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 11 C -0.13 -2.21 5.61 -26.73 -0.15 -2.36 16 12 C -0.15 -2.63 9.18 37.16 0.34 -2.29 16 13 N -0.75 -15.76 4.31 -53.43 -0.23 -15.99 16 14 C -0.24 -6.09 8.24 -15.06 -0.12 -6.21 16 15 H 0.09 2.58 7.55 -52.49 -0.40 2.18 16 16 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 17 N -0.93 -27.68 13.97 55.49 0.78 -26.91 16 18 Si 0.88 20.92 27.73 -169.99 -4.71 16.20 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.28 -6.03 6.52 56.52 0.37 -5.66 16 22 C -0.11 -1.24 6.74 -25.92 -0.17 -1.42 16 23 C -0.14 -1.30 7.73 -25.92 -0.20 -1.50 16 24 C -0.13 -1.39 7.22 -25.92 -0.19 -1.58 16 25 H 0.10 1.19 8.06 -52.49 -0.42 0.77 16 26 H 0.10 1.52 7.84 -52.49 -0.41 1.11 16 27 H 0.11 1.31 7.49 -52.49 -0.39 0.92 16 28 H 0.08 1.10 7.79 -51.93 -0.40 0.69 16 29 H 0.08 0.87 7.31 -51.93 -0.38 0.49 16 30 H 0.41 6.57 8.14 -40.82 -0.33 6.24 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.09 1.90 5.99 -51.93 -0.31 1.58 16 37 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.36 7.79 5.66 -40.82 -0.23 7.55 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.09 1.09 7.80 -51.93 -0.40 0.69 16 41 H 0.07 0.76 7.33 -51.93 -0.38 0.38 16 42 H 0.08 0.68 7.60 -51.93 -0.39 0.29 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.08 0.82 8.10 -51.93 -0.42 0.39 16 45 H 0.09 0.95 8.09 -51.93 -0.42 0.53 16 LS Contribution 359.56 15.07 5.42 5.42 Total: -1.00 -29.58 359.56 -7.85 -37.43 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: -7.85 Total: 15.14 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -1.01 Total: -9.20 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.22 Total: -54.62 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.71 Total: 16.20 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.58 -7.85 -37.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269465921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.345 kcal (2) G-P(sol) polarization free energy of solvation -29.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds