Wall clock time and date at job start Tue Mar 31 2020 01:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50704 * 119.99953 * 2 1 4 4 C 1.52995 * 109.46880 * 125.00482 * 3 2 1 5 5 C 1.50708 * 112.85150 * 297.81563 * 4 3 2 6 6 O 1.21284 * 119.99697 * 110.20204 * 5 4 3 7 7 N 1.34768 * 119.99996 * 290.20775 * 5 4 3 8 8 C 1.46497 * 120.00203 * 174.77920 * 7 5 4 9 9 C 1.52995 * 109.47658 * 179.97438 * 8 7 5 10 10 H 1.08998 * 109.47036 * 295.00144 * 9 8 7 11 11 C 1.53003 * 109.47521 * 174.99757 * 9 8 7 12 12 C 1.52996 * 109.47081 * 174.99930 * 11 9 8 13 13 N 1.46501 * 109.47110 * 54.99932 * 9 8 7 14 14 C 1.36940 * 120.00326 * 205.00325 * 13 9 8 15 15 H 1.08002 * 119.99606 * 359.97438 * 14 13 9 16 16 C 1.38809 * 120.00176 * 179.97438 * 14 13 9 17 17 N 1.31620 * 119.99838 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00210 * 359.97438 * 16 14 13 19 19 H 1.48505 * 109.46932 * 89.99783 * 18 16 14 20 20 H 1.48493 * 109.47489 * 210.00104 * 18 16 14 21 21 H 1.48503 * 109.46795 * 330.00126 * 18 16 14 22 22 C 1.53784 * 113.69167 * 69.08410 * 4 3 2 23 23 C 1.53781 * 87.07878 * 89.12834 * 22 4 3 24 24 C 1.53781 * 113.61462 * 166.62313 * 4 3 2 25 25 H 1.07994 * 119.99481 * 179.97438 * 1 2 3 26 26 H 1.07994 * 119.99975 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.00170 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.46433 * 5.00842 * 3 2 1 29 29 H 1.08993 * 109.47152 * 245.00769 * 3 2 1 30 30 H 0.97001 * 120.00383 * 355.05121 * 7 5 4 31 31 H 1.09002 * 109.47206 * 299.99929 * 8 7 5 32 32 H 1.09003 * 109.47027 * 59.99427 * 8 7 5 33 33 H 1.09000 * 109.47051 * 295.00072 * 11 9 8 34 34 H 1.08997 * 109.46814 * 54.99965 * 11 9 8 35 35 H 1.09000 * 109.47294 * 299.99993 * 12 11 9 36 36 H 1.08997 * 109.47269 * 60.00313 * 12 11 9 37 37 H 1.09000 * 109.46865 * 179.97438 * 12 11 9 38 38 H 0.97006 * 120.00288 * 24.99520 * 13 9 8 39 39 H 0.97002 * 119.99917 * 179.97438 * 17 16 14 40 40 H 1.09000 * 113.61301 * 203.67195 * 22 4 3 41 41 H 1.09002 * 113.61213 * 334.58200 * 22 4 3 42 42 H 1.09005 * 113.61013 * 270.88315 * 23 22 4 43 43 H 1.08992 * 113.61664 * 139.98334 * 23 22 4 44 44 H 1.09000 * 113.61321 * 25.34534 * 24 4 3 45 45 H 1.08998 * 113.61483 * 156.25164 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1815 5 6 2.3373 1.2557 2.5151 6 8 2.4369 0.2559 3.1945 7 7 1.6025 2.2973 2.9525 8 6 0.8319 2.1805 4.1929 9 6 0.0940 3.4937 4.4606 10 1 0.8188 4.2867 4.6450 11 6 -0.8075 3.3317 5.6862 12 6 -1.4495 4.6776 6.0286 13 7 -0.7236 3.8408 3.2955 14 6 -1.0585 5.1473 3.0587 15 1 -0.7202 5.9218 3.7311 16 6 -1.8327 5.4761 1.9545 17 7 -2.1542 6.7320 1.7266 18 14 -2.4172 4.1366 0.7911 19 1 -3.7329 3.6224 1.2494 20 1 -2.5535 4.6948 -0.5781 21 1 -1.4298 3.0274 0.7775 22 6 4.2069 0.3470 1.0414 23 6 4.9664 1.4741 0.3218 24 6 4.0768 2.4611 1.0960 25 1 -0.5399 -0.9353 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3585 2.1316 0.0897 29 1 2.6212 1.4027 -0.9314 30 1 1.5806 3.1230 2.4440 31 1 0.1090 1.3703 4.0967 32 1 1.5073 1.9682 5.0217 33 1 -1.5875 2.6017 5.4695 34 1 -0.2124 2.9873 6.5319 35 1 -0.6696 5.4075 6.2452 36 1 -2.0447 5.0219 5.1828 37 1 -2.0921 4.5620 6.9014 38 1 -1.0277 3.1451 2.6917 39 1 -2.6949 6.9618 0.9548 40 1 4.6520 0.0596 1.9940 41 1 3.9846 -0.5072 0.4019 42 1 4.8031 1.4918 -0.7558 43 1 6.0207 1.5320 0.5921 44 1 3.7495 3.3134 0.5007 45 1 4.4863 2.7515 2.0635 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269465921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:32 Heat of formation + Delta-G solvation = -19.141295 kcal Electronic energy + Delta-G solvation = -23216.401646 eV Core-core repulsion = 20041.048980 eV Total energy + Delta-G solvation = -3175.352665 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.67516 -39.21501 -38.12185 -35.32758 -35.15682 -34.13874 -32.08316 -30.22394 -28.94369 -26.62068 -26.08243 -24.97151 -23.79066 -21.85328 -21.60030 -20.98462 -19.88471 -19.21982 -18.14319 -17.12243 -17.02914 -16.51970 -16.19487 -15.72625 -15.52443 -15.25128 -14.86457 -14.72109 -14.63185 -14.47908 -14.15343 -13.72826 -13.29842 -13.16667 -12.95063 -12.89632 -12.86880 -12.77288 -12.34520 -12.16731 -12.08029 -11.98438 -11.89428 -11.59672 -11.46636 -11.42245 -11.15121 -10.97447 -10.56888 -10.24163 -10.00092 -9.29044 -7.95014 -5.26968 1.30729 1.37960 1.41125 1.47542 1.67203 2.31919 2.51607 3.36784 3.39413 3.52727 3.59948 3.78980 3.88276 3.88881 4.02866 4.15160 4.26782 4.30863 4.43791 4.53545 4.58740 4.60368 4.73727 4.79699 4.81230 4.87209 4.93654 4.95609 5.05686 5.10009 5.11596 5.14829 5.18502 5.23932 5.45688 5.48968 5.56284 5.67220 5.71460 5.80395 5.87376 6.27231 6.62040 7.13238 7.28007 7.87856 8.07042 9.25878 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014895 B = 0.006229 C = 0.005287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.330517 B = 4494.238768 C = 5294.967772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.066 4.066 4 C -0.104 4.104 5 C 0.526 3.474 6 O -0.583 6.583 7 N -0.715 5.715 8 C 0.120 3.880 9 C 0.170 3.830 10 H 0.059 0.941 11 C -0.128 4.128 12 C -0.142 4.142 13 N -0.744 5.744 14 C -0.203 4.203 15 H 0.069 0.931 16 C -0.059 4.059 17 N -0.982 5.982 18 Si 0.938 3.062 19 H -0.294 1.294 20 H -0.303 1.303 21 H -0.248 1.248 22 C -0.111 4.111 23 C -0.125 4.125 24 C -0.129 4.129 25 H 0.107 0.893 26 H 0.081 0.919 27 H 0.120 0.880 28 H 0.062 0.938 29 H 0.110 0.890 30 H 0.409 0.591 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.042 0.958 36 H 0.046 0.954 37 H 0.053 0.947 38 H 0.363 0.637 39 H 0.253 0.747 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.100 0.900 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.532 -12.408 -1.950 17.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.168 4.168 3 C -0.104 4.104 4 C -0.107 4.107 5 C 0.314 3.686 6 O -0.464 6.464 7 N -0.366 5.366 8 C -0.004 4.004 9 C 0.062 3.938 10 H 0.077 0.923 11 C -0.169 4.169 12 C -0.200 4.200 13 N -0.388 5.388 14 C -0.334 4.334 15 H 0.086 0.914 16 C -0.250 4.250 17 N -0.634 5.634 18 Si 0.768 3.232 19 H -0.221 1.221 20 H -0.230 1.230 21 H -0.173 1.173 22 C -0.149 4.149 23 C -0.162 4.162 24 C -0.166 4.166 25 H 0.125 0.875 26 H 0.099 0.901 27 H 0.138 0.862 28 H 0.080 0.920 29 H 0.128 0.872 30 H 0.245 0.755 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.196 0.804 39 H 0.062 0.938 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.118 0.882 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 12.590 -12.886 -1.422 18.071 hybrid contribution -1.214 0.069 -0.820 1.467 sum 11.376 -12.816 -2.242 17.283 Atomic orbital electron populations 1.23971 0.96567 1.01861 1.01843 1.22995 0.95738 0.98926 0.99163 1.20556 0.97030 0.95563 0.97209 1.22190 0.95133 1.01992 0.91395 1.20888 0.77860 0.81995 0.87904 1.90617 1.63855 1.32784 1.59138 1.46037 1.47437 1.17058 1.26042 1.21569 0.94296 0.97630 0.86938 1.20666 0.91824 0.93991 0.87351 0.92329 1.21967 0.99356 0.97563 0.97979 1.21683 1.00379 0.97210 1.00715 1.42786 1.62725 1.04577 1.28675 1.18952 1.23975 0.84460 1.06027 0.91357 1.25267 1.01836 0.97274 1.00636 1.69852 1.44494 1.17886 1.31136 0.85667 0.78653 0.80234 0.78632 1.22084 1.23023 1.17257 1.22815 0.93801 0.97077 1.01165 1.22813 0.99178 0.94031 1.00162 1.23025 0.95305 0.96502 1.01782 0.87461 0.90067 0.86186 0.91965 0.87206 0.75548 0.92704 0.90345 0.92743 0.90403 0.93871 0.93504 0.92783 0.80442 0.93761 0.90748 0.90186 0.88197 0.89844 0.89682 0.90036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -5.43 14.32 67.78 0.97 -4.46 16 2 C -0.15 -3.63 8.67 25.64 0.22 -3.41 16 3 C -0.07 -1.50 5.03 29.85 0.15 -1.35 16 4 C -0.10 -2.42 0.78 -52.40 -0.04 -2.46 16 5 C 0.53 16.02 6.19 87.66 0.54 16.56 16 6 O -0.58 -21.37 16.27 -3.04 -0.05 -21.42 16 7 N -0.72 -21.81 5.38 -463.07 -2.49 -24.30 16 8 C 0.12 3.70 5.24 86.38 0.45 4.15 16 9 C 0.17 5.75 2.59 44.99 0.12 5.87 16 10 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 11 C -0.13 -4.00 5.61 30.59 0.17 -3.83 16 12 C -0.14 -4.95 9.18 71.98 0.66 -4.29 16 13 N -0.74 -30.87 4.31 -322.94 -1.39 -32.26 16 14 C -0.20 -10.39 8.24 84.03 0.69 -9.69 16 15 H 0.07 3.83 7.55 -2.91 -0.02 3.81 16 16 C -0.06 -3.26 5.50 84.86 0.47 -2.79 16 17 N -0.98 -60.19 13.97 21.65 0.30 -59.89 16 18 Si 0.94 43.74 27.73 68.60 1.90 45.64 16 19 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 20 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 21 H -0.25 -10.25 6.52 99.48 0.65 -9.60 16 22 C -0.11 -2.21 6.74 31.12 0.21 -2.00 16 23 C -0.12 -1.88 7.73 31.12 0.24 -1.63 16 24 C -0.13 -2.46 7.22 31.12 0.22 -2.24 16 25 H 0.11 2.50 8.06 -2.91 -0.02 2.48 16 26 H 0.08 2.42 7.84 -2.91 -0.02 2.39 16 27 H 0.12 2.61 7.49 -2.91 -0.02 2.58 16 28 H 0.06 1.62 7.79 -2.39 -0.02 1.60 16 29 H 0.11 1.90 7.31 -2.39 -0.02 1.89 16 30 H 0.41 12.61 8.14 -92.71 -0.75 11.86 16 31 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.05 2.01 5.99 -2.39 -0.01 2.00 16 37 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.36 15.11 5.66 -92.70 -0.52 14.59 16 39 H 0.25 15.07 8.31 -92.71 -0.77 14.29 16 40 H 0.07 1.71 7.80 -2.39 -0.02 1.69 16 41 H 0.08 1.45 7.33 -2.39 -0.02 1.44 16 42 H 0.10 1.20 7.60 -2.38 -0.02 1.19 16 43 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.08 1.53 8.10 -2.39 -0.02 1.51 16 45 H 0.08 1.64 8.09 -2.39 -0.02 1.62 16 Total: -1.00 -64.75 359.56 2.98 -61.77 By element: Atomic # 1 Polarization: 42.40 SS G_CDS: -0.38 Total: 42.02 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: 5.08 Total: -11.57 kcal Atomic # 7 Polarization: -112.87 SS G_CDS: -3.58 Total: -116.45 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.05 Total: -21.42 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.90 Total: 45.64 kcal Total: -64.75 2.98 -61.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269465921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.633 kcal (2) G-P(sol) polarization free energy of solvation -64.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds