Wall clock time and date at job start Tue Mar 31 2020 01:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47064 * 2 1 4 4 H 1.08998 * 109.46945 * 55.00021 * 3 2 1 5 5 C 1.53001 * 109.47394 * 174.99741 * 3 2 1 6 6 N 1.46496 * 109.47413 * 175.00121 * 5 3 2 7 7 C 1.34777 * 119.99950 * 180.02562 * 6 5 3 8 8 O 1.21274 * 120.00166 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.99923 * 180.02562 * 7 6 5 10 10 H 1.08999 * 115.57844 * 26.25261 * 9 7 6 11 11 C 1.53083 * 117.51125 * 172.01564 * 9 7 6 12 12 C 1.52555 * 59.89502 * 107.45437 * 11 9 7 13 13 C 1.53879 * 120.82400 * 249.79769 * 12 11 9 14 14 C 1.54983 * 104.05922 * 192.35592 * 13 12 11 15 15 C 1.54922 * 102.82363 * 37.56737 * 14 13 12 16 16 C 1.53484 * 121.09220 * 110.42212 * 12 11 9 17 17 N 1.46500 * 109.47330 * 294.99926 * 3 2 1 18 18 C 1.36938 * 119.99865 * 84.99577 * 17 3 2 19 19 H 1.07996 * 120.00225 * 0.02562 * 18 17 3 20 20 C 1.38820 * 119.99558 * 179.97438 * 18 17 3 21 21 N 1.31617 * 120.00008 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99581 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47092 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47278 * 120.00473 * 22 20 18 25 25 H 1.48506 * 109.47026 * 240.00129 * 22 20 18 26 26 H 1.08997 * 109.47050 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47436 * 300.00051 * 1 2 3 28 28 H 1.09009 * 109.46960 * 59.99957 * 1 2 3 29 29 H 1.09005 * 109.47636 * 240.00000 * 2 1 3 30 30 H 1.09000 * 109.47072 * 119.99735 * 2 1 3 31 31 H 1.09005 * 109.46992 * 55.00137 * 5 3 2 32 32 H 1.09001 * 109.47109 * 295.00655 * 5 3 2 33 33 H 0.97003 * 120.00078 * 0.02562 * 6 5 3 34 34 H 1.09003 * 117.50983 * 359.97438 * 11 9 7 35 35 H 1.09001 * 117.50944 * 214.90703 * 11 9 7 36 36 H 1.09001 * 110.50600 * 310.99912 * 13 12 11 37 37 H 1.08996 * 110.51202 * 73.70757 * 13 12 11 38 38 H 1.09002 * 110.74725 * 279.23085 * 14 13 12 39 39 H 1.09001 * 110.89742 * 155.97302 * 14 13 12 40 40 H 1.09001 * 110.48193 * 203.59025 * 15 14 13 41 41 H 1.09004 * 110.48205 * 80.96328 * 15 14 13 42 42 H 1.08997 * 110.06936 * 263.31245 * 16 12 11 43 43 H 1.09005 * 110.06757 * 24.78822 * 16 12 11 44 44 H 0.97003 * 119.99892 * 265.00221 * 17 3 2 45 45 H 0.96996 * 119.99414 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4444 0.1258 6 7 4.0630 2.8169 0.0061 7 6 5.3857 3.0630 0.0860 8 8 6.1635 2.1483 0.2565 9 6 5.8981 4.4749 -0.0366 10 1 5.1967 5.2570 0.2538 11 6 7.3829 4.7155 0.2478 12 6 6.8577 4.7793 -1.1831 13 6 7.2293 3.6938 -2.2086 14 6 6.7782 4.2887 -3.5667 15 6 7.1226 5.7916 -3.4152 16 6 6.7866 6.1111 -1.9426 17 7 1.6524 2.0975 -1.2518 18 6 0.4155 2.6735 -1.3688 19 1 -0.2741 2.6452 -0.5382 20 6 0.0486 3.2946 -2.5548 21 7 0.8893 3.3295 -3.5669 22 14 -1.6383 4.0808 -2.7142 23 1 -2.3881 3.9055 -1.4444 24 1 -1.4841 5.5293 -3.0027 25 1 -2.3841 3.4321 -3.8225 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9954 0.8312 -0.6659 32 1 3.8498 1.0377 1.0961 33 1 3.4409 3.5485 -0.1308 34 1 7.9889 3.8525 0.5239 35 1 7.6582 5.6558 0.7254 36 1 8.3051 3.5189 -2.2066 37 1 6.6908 2.7697 -1.9986 38 1 5.7067 4.1509 -3.7118 39 1 7.3378 3.8456 -4.3904 40 1 6.5087 6.3930 -4.0856 41 1 8.1814 5.9618 -3.6104 42 1 5.7829 6.5298 -1.8703 43 1 7.5146 6.8131 -1.5358 44 1 2.2719 2.1232 -1.9978 45 1 0.6326 3.7632 -4.3957 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269492437.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:09 Heat of formation + Delta-G solvation = -27.703650 kcal Electronic energy + Delta-G solvation = -22714.898124 eV Core-core repulsion = 19539.174167 eV Total energy + Delta-G solvation = -3175.723957 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.11707 -38.10370 -36.58627 -33.98790 -33.61121 -32.35856 -29.77241 -28.67915 -28.11428 -25.67050 -24.35185 -23.22023 -22.00000 -20.78303 -20.12306 -19.64933 -18.64441 -17.30026 -16.58641 -15.88158 -15.44811 -15.18551 -15.05427 -14.28479 -13.96519 -13.89094 -13.22965 -13.18915 -13.12284 -12.79613 -12.63142 -12.30087 -12.09124 -11.96134 -11.43616 -11.06822 -10.98900 -10.95546 -10.91127 -10.81267 -10.73060 -10.47320 -10.44425 -10.21031 -10.17793 -9.99851 -9.78885 -9.55259 -9.35246 -8.96551 -8.55714 -7.03855 -5.82465 -3.11358 2.79486 3.37881 3.44665 3.46487 3.54993 3.97223 4.51148 4.53797 4.69560 4.85354 4.92278 5.18221 5.24433 5.35211 5.42510 5.44878 5.54735 5.56923 5.71217 5.75418 5.83183 5.87240 5.92802 5.96171 5.97418 5.97806 6.03361 6.10796 6.15559 6.19029 6.26891 6.40291 6.43027 6.48876 6.55632 6.58050 6.61516 6.94515 7.03372 7.23564 7.65996 8.01646 8.34739 8.64978 9.46893 10.02155 10.38281 11.39319 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014394 B = 0.005271 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.774047 B = 5310.387420 C = 6627.578799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.053 0.947 5 C 0.115 3.885 6 N -0.708 5.708 7 C 0.542 3.458 8 O -0.556 6.556 9 C -0.179 4.179 10 H 0.119 0.881 11 C -0.139 4.139 12 C -0.094 4.094 13 C -0.091 4.091 14 C -0.125 4.125 15 C -0.121 4.121 16 C -0.090 4.090 17 N -0.721 5.721 18 C -0.236 4.236 19 H 0.073 0.927 20 C -0.011 4.011 21 N -0.928 5.928 22 Si 0.901 3.099 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 H 0.032 0.968 27 H 0.039 0.961 28 H 0.084 0.916 29 H 0.056 0.944 30 H 0.042 0.958 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.410 0.590 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.385 0.615 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.853 3.165 5.079 12.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.071 0.929 5 C -0.009 4.009 6 N -0.358 5.358 7 C 0.328 3.672 8 O -0.436 6.436 9 C -0.200 4.200 10 H 0.137 0.863 11 C -0.176 4.176 12 C -0.094 4.094 13 C -0.128 4.128 14 C -0.163 4.163 15 C -0.159 4.159 16 C -0.127 4.127 17 N -0.363 5.363 18 C -0.367 4.367 19 H 0.091 0.909 20 C -0.208 4.208 21 N -0.576 5.576 22 Si 0.733 3.267 23 H -0.206 1.206 24 H -0.220 1.220 25 H -0.220 1.220 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.103 0.897 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.247 0.753 34 H 0.124 0.876 35 H 0.117 0.883 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.219 0.781 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.197 2.584 5.222 12.622 hybrid contribution -1.274 0.755 -0.425 1.541 sum 9.923 3.339 4.797 11.516 Atomic orbital electron populations 1.21766 0.95734 0.99611 1.03231 1.22068 0.96952 0.98441 0.99990 1.20562 0.89976 0.92770 0.91421 0.92911 1.21651 0.95571 0.82771 1.00919 1.45908 1.07041 1.10674 1.72207 1.19520 0.82380 0.89306 0.75979 1.90636 1.56271 1.46179 1.50466 1.22360 0.94692 0.96276 1.06716 0.86297 1.22984 0.93821 1.03304 0.97533 1.21735 1.00794 0.97467 0.89445 1.21909 1.00875 0.97093 0.92941 1.22510 1.02075 0.94989 0.96714 1.22328 1.00843 0.96839 0.95855 1.21696 1.01873 0.94416 0.94725 1.42452 1.16745 1.65819 1.11269 1.19246 0.91930 1.27582 0.97969 0.90899 1.24726 0.97996 1.01610 0.96421 1.69671 1.35030 1.48938 1.03930 0.86209 0.84202 0.78878 0.77443 1.20585 1.21968 1.21954 0.94893 0.94137 0.89681 0.92551 0.93886 0.91990 0.92013 0.75322 0.87595 0.88303 0.91276 0.90870 0.90666 0.91672 0.91502 0.91860 0.91101 0.91514 0.78082 0.93597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.18 37.15 0.34 -2.27 16 2 C -0.13 -2.32 5.61 -26.73 -0.15 -2.47 16 3 C 0.16 3.02 2.59 -67.93 -0.18 2.84 16 4 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 5 C 0.12 1.99 5.23 -4.04 -0.02 1.97 16 6 N -0.71 -12.04 5.39 -60.29 -0.32 -12.37 16 7 C 0.54 9.19 6.51 -10.98 -0.07 9.12 16 8 O -0.56 -10.84 15.44 5.56 0.09 -10.75 16 9 C -0.18 -2.50 6.06 -91.94 -0.56 -3.06 16 10 H 0.12 1.49 8.14 -51.93 -0.42 1.07 16 11 C -0.14 -1.69 9.77 -26.92 -0.26 -1.96 16 12 C -0.09 -1.22 2.45 -154.24 -0.38 -1.59 16 13 C -0.09 -1.26 6.35 -25.23 -0.16 -1.42 16 14 C -0.13 -1.63 6.91 -24.67 -0.17 -1.81 16 15 C -0.12 -1.35 6.84 -24.99 -0.17 -1.53 16 16 C -0.09 -1.02 6.55 -25.76 -0.17 -1.19 16 17 N -0.72 -16.32 4.51 -53.42 -0.24 -16.56 16 18 C -0.24 -5.95 7.75 -15.06 -0.12 -6.07 16 19 H 0.07 1.81 7.32 -52.49 -0.38 1.42 16 20 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 21 N -0.93 -26.43 13.06 55.49 0.72 -25.71 16 22 Si 0.90 21.38 29.55 -169.99 -5.02 16.36 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 1.79 5.99 -51.92 -0.31 1.48 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.41 7.10 8.14 -40.82 -0.33 6.76 16 34 H 0.11 1.41 7.70 -51.93 -0.40 1.01 16 35 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 1.21 6.27 -51.93 -0.33 0.89 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.39 9.59 7.80 -40.82 -0.32 9.27 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 358.28 15.07 5.40 5.40 Total: -1.00 -28.39 358.28 -9.50 -37.90 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: -7.97 Total: 15.54 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -2.16 Total: -9.81 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 0.16 Total: -54.63 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.39 -9.50 -37.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269492437.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.193 kcal (2) G-P(sol) polarization free energy of solvation -28.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds