Wall clock time and date at job start Tue Mar 31 2020 01:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 N 1.46901 * 109.46769 * 180.02562 * 3 2 1 5 5 C 1.47560 * 111.00350 * 69.87108 * 4 3 2 6 6 C 1.54583 * 107.28856 * 123.19889 * 5 4 3 7 7 C 1.53696 * 102.86221 * 20.98085 * 6 5 4 8 8 C 1.53219 * 111.53153 * 205.83201 * 7 6 5 9 9 C 1.54797 * 101.39163 * 261.15133 * 8 7 6 10 10 N 1.46934 * 105.54259 * 335.83189 * 9 8 7 11 11 C 1.46498 * 124.37649 * 196.74781 * 10 9 8 12 12 C 1.52999 * 109.46830 * 270.02003 * 11 10 9 13 13 C 1.50703 * 109.47355 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99587 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00337 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99755 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00150 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47078 * 90.00270 * 17 15 13 19 19 H 1.48500 * 109.47229 * 210.00521 * 17 15 13 20 20 H 1.48505 * 109.46936 * 330.00554 * 17 15 13 21 21 C 1.34880 * 111.24213 * 16.73996 * 10 9 8 22 22 O 1.21287 * 125.21722 * 178.75946 * 21 10 9 23 23 C 1.48132 * 110.99722 * 190.81539 * 4 3 2 24 24 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 25 25 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 26 26 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 28 28 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 29 29 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 30 30 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 31 31 H 1.08994 * 109.87868 * 242.62496 * 5 4 3 32 32 H 1.08998 * 109.87608 * 3.62849 * 5 4 3 33 33 H 1.09001 * 110.72978 * 139.32259 * 6 5 4 34 34 H 1.08997 * 110.73464 * 262.45442 * 6 5 4 35 35 H 1.08998 * 111.04011 * 19.18391 * 8 7 6 36 36 H 1.09003 * 111.03541 * 143.12813 * 8 7 6 37 37 H 1.09001 * 110.23704 * 216.81400 * 9 8 7 38 38 H 1.08995 * 110.30409 * 94.88073 * 9 8 7 39 39 H 1.08999 * 109.47685 * 30.01889 * 11 10 9 40 40 H 1.08997 * 109.47185 * 150.02022 * 11 10 9 41 41 H 1.09006 * 109.47447 * 300.00013 * 12 11 10 42 42 H 1.08997 * 109.47220 * 60.00041 * 12 11 10 43 43 H 0.97005 * 120.00003 * 180.02562 * 16 15 13 44 44 H 1.08995 * 110.39570 * 333.87971 * 23 4 3 45 45 H 1.08996 * 110.39306 * 96.28605 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0373 0.9685 -1.2943 6 6 4.9562 2.0803 -1.8503 7 6 5.3131 2.8896 -0.5933 8 6 5.6626 4.3407 -0.9393 9 6 7.2097 4.2900 -0.9431 10 7 7.5686 3.1539 -0.0833 11 6 8.9007 2.9357 0.4860 12 6 9.7373 2.0960 -0.4814 13 6 11.1079 1.8719 0.1037 14 1 11.3571 2.2867 1.0693 15 6 12.0432 1.1367 -0.5930 16 7 11.7395 0.6312 -1.7685 17 14 13.7419 0.8584 0.1327 18 1 13.7354 -0.3843 0.9456 19 1 14.7336 0.7269 -0.9648 20 1 14.1070 2.0116 0.9943 21 6 6.5128 2.3380 0.1144 22 8 6.5319 1.3147 0.7651 23 6 4.0399 2.8008 0.2589 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3635 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 4.6101 0.0529 -1.1477 32 1 3.2148 0.7844 -1.9854 33 1 5.8517 1.6516 -2.3003 34 1 4.4215 2.6982 -2.5716 35 1 5.2774 4.6124 -1.9221 36 1 5.2954 5.0247 -0.1741 37 1 7.6183 5.2149 -0.5358 38 1 7.5803 4.1284 -1.9553 39 1 9.3885 3.8969 0.6481 40 1 8.8080 2.4104 1.4365 41 1 9.2495 1.1347 -0.6435 42 1 9.8299 2.6212 -1.4320 43 1 12.3974 0.1136 -2.2585 44 1 3.3196 3.5564 -0.0543 45 1 4.2809 2.9189 1.3153 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272452113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:55 Heat of formation + Delta-G solvation = -40.597278 kcal Electronic energy + Delta-G solvation = -22689.325899 eV Core-core repulsion = 19513.042832 eV Total energy + Delta-G solvation = -3176.283067 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.89510 -38.08931 -35.91880 -34.80995 -33.40088 -31.97524 -30.12805 -29.18985 -27.97755 -25.78063 -24.96686 -23.24540 -22.16178 -21.89129 -20.55303 -20.12566 -18.51028 -16.61837 -16.26303 -15.90047 -15.56803 -15.20544 -14.94923 -14.48984 -14.36455 -13.94446 -13.66518 -13.24325 -12.94962 -12.78961 -12.66474 -12.54628 -12.36657 -12.17061 -12.08309 -11.94763 -11.56747 -11.28793 -11.16691 -11.03055 -10.93184 -10.82761 -10.74999 -10.67810 -10.56687 -9.95907 -9.82286 -9.27618 -8.98569 -8.35390 -8.24930 -7.93759 -6.00574 -4.03865 3.08767 3.33203 3.38839 3.41401 3.60822 3.84739 4.42972 4.45730 4.47632 4.51476 4.82887 4.87517 4.92916 5.07496 5.16915 5.24957 5.28619 5.35578 5.36549 5.44125 5.52239 5.54771 5.62384 5.66506 5.72864 5.78969 5.85017 5.87586 5.94128 6.03473 6.07965 6.12042 6.17422 6.25691 6.50340 6.84897 6.94975 7.08177 7.11507 7.56009 7.69993 7.89845 7.99935 8.36413 8.80006 9.03151 9.60070 11.10882 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.027335 B = 0.003594 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.083357 B = 7788.726862 C = 8262.850402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C 0.051 3.949 4 N -0.520 5.520 5 C 0.047 3.953 6 C -0.118 4.118 7 C -0.108 4.108 8 C -0.120 4.120 9 C 0.104 3.896 10 N -0.616 5.616 11 C 0.129 3.871 12 C 0.012 3.988 13 C -0.522 4.522 14 H 0.057 0.943 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.895 3.105 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.529 3.471 22 O -0.510 6.510 23 C 0.072 3.928 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.031 0.969 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.020 0.980 42 H 0.016 0.984 43 H 0.261 0.739 44 H 0.052 0.948 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.617 7.309 -0.742 21.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.077 4.077 4 N -0.244 5.244 5 C -0.080 4.080 6 C -0.157 4.157 7 C -0.112 4.112 8 C -0.158 4.158 9 C -0.020 4.020 10 N -0.350 5.350 11 C 0.009 3.991 12 C -0.026 4.026 13 C -0.561 4.561 14 H 0.075 0.925 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.722 3.278 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C 0.315 3.685 22 O -0.385 6.385 23 C -0.056 4.056 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.039 0.961 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.285 6.303 -0.091 21.242 hybrid contribution 0.823 0.406 -0.475 1.033 sum -19.462 6.709 -0.566 20.594 Atomic orbital electron populations 1.21738 0.95886 1.01655 1.01520 1.21521 0.94941 0.96477 1.02994 1.22326 0.87841 0.97221 1.00315 1.63622 1.06793 1.22585 1.31398 1.22898 0.97345 0.98855 0.88951 1.22539 1.00640 0.97086 0.95412 1.21538 0.95837 0.96607 0.97244 1.22484 0.95707 0.94695 1.02924 1.22051 0.94172 0.90111 0.95678 1.48687 1.11520 1.25115 1.49713 1.21769 0.78993 1.00283 0.98009 1.19401 0.93825 0.95141 0.94210 1.21097 0.97157 1.33385 1.04413 0.92503 1.25000 0.98845 0.95556 0.94881 1.69974 1.34948 1.35274 1.12998 0.86556 0.83828 0.78686 0.78707 1.20564 1.21219 1.19824 1.19868 0.84366 0.83646 0.80624 1.90722 1.84182 1.23006 1.40540 1.22670 0.93087 0.89598 1.00204 0.92785 0.93051 0.92616 0.92008 0.90984 0.95084 0.91101 0.89985 0.92702 0.89961 0.90570 0.89428 0.90024 0.90705 0.91190 0.91779 0.91222 0.96119 0.96565 0.92963 0.92959 0.89992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.78 16 2 C -0.12 -1.18 5.96 -26.73 -0.16 -1.34 16 3 C 0.05 0.53 4.53 -3.82 -0.02 0.51 16 4 N -0.52 -6.90 5.16 -231.68 -1.20 -8.10 16 5 C 0.05 0.61 6.18 -2.63 -0.02 0.60 16 6 C -0.12 -1.50 5.93 -25.54 -0.15 -1.65 16 7 C -0.11 -1.47 0.67 -155.37 -0.10 -1.58 16 8 C -0.12 -1.26 6.26 -25.67 -0.16 -1.42 16 9 C 0.10 1.40 7.37 -2.86 -0.02 1.38 16 10 N -0.62 -11.41 2.95 -172.57 -0.51 -11.92 16 11 C 0.13 2.80 5.88 -4.04 -0.02 2.78 16 12 C 0.01 0.32 5.30 -27.88 -0.15 0.18 16 13 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 14 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -27.30 13.29 55.43 0.74 -26.56 16 17 Si 0.89 21.95 29.54 -169.99 -5.02 16.92 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 C 0.53 10.07 6.73 -11.37 -0.08 10.00 16 22 O -0.51 -11.95 17.51 5.55 0.10 -11.85 16 23 C 0.07 0.90 5.53 -2.91 -0.02 0.89 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.62 7.14 -51.93 -0.37 0.25 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.03 0.29 7.96 -51.93 -0.41 -0.12 16 30 H 0.07 0.69 8.07 -51.93 -0.42 0.27 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.05 0.60 6.91 -51.93 -0.36 0.24 16 33 H 0.08 1.20 8.00 -51.93 -0.42 0.78 16 34 H 0.08 0.76 7.75 -51.93 -0.40 0.35 16 35 H 0.09 0.72 7.62 -51.93 -0.40 0.33 16 36 H 0.08 0.73 7.97 -51.93 -0.41 0.32 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.07 1.59 7.96 -51.93 -0.41 1.18 16 41 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.05 0.52 7.70 -51.93 -0.40 0.12 16 45 H 0.08 1.13 8.01 -51.93 -0.42 0.71 16 LS Contribution 357.17 15.07 5.38 5.38 Total: -1.00 -33.79 357.17 -9.64 -43.43 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -8.19 Total: -3.18 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -0.94 Total: -4.13 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: -0.97 Total: -46.58 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.10 Total: -11.85 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.79 -9.64 -43.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272452113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.831 kcal (2) G-P(sol) polarization free energy of solvation -33.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds