Wall clock time and date at job start Tue Mar 31 2020 01:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 N 1.46901 * 109.46769 * 180.02562 * 3 2 1 5 5 C 1.47560 * 111.00350 * 69.87108 * 4 3 2 6 6 C 1.54583 * 107.28856 * 123.19889 * 5 4 3 7 7 C 1.53696 * 102.86221 * 20.98085 * 6 5 4 8 8 C 1.53219 * 111.53153 * 205.83201 * 7 6 5 9 9 C 1.54797 * 101.39163 * 261.15133 * 8 7 6 10 10 N 1.46934 * 105.54259 * 335.83189 * 9 8 7 11 11 C 1.46498 * 124.37649 * 196.74781 * 10 9 8 12 12 C 1.52999 * 109.46830 * 270.02003 * 11 10 9 13 13 C 1.50703 * 109.47355 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99587 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00337 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99755 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00150 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47078 * 90.00270 * 17 15 13 19 19 H 1.48500 * 109.47229 * 210.00521 * 17 15 13 20 20 H 1.48505 * 109.46936 * 330.00554 * 17 15 13 21 21 C 1.34880 * 111.24213 * 16.73996 * 10 9 8 22 22 O 1.21287 * 125.21722 * 178.75946 * 21 10 9 23 23 C 1.48132 * 110.99722 * 190.81539 * 4 3 2 24 24 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 25 25 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 26 26 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 28 28 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 29 29 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 30 30 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 31 31 H 1.08994 * 109.87868 * 242.62496 * 5 4 3 32 32 H 1.08998 * 109.87608 * 3.62849 * 5 4 3 33 33 H 1.09001 * 110.72978 * 139.32259 * 6 5 4 34 34 H 1.08997 * 110.73464 * 262.45442 * 6 5 4 35 35 H 1.08998 * 111.04011 * 19.18391 * 8 7 6 36 36 H 1.09003 * 111.03541 * 143.12813 * 8 7 6 37 37 H 1.09001 * 110.23704 * 216.81400 * 9 8 7 38 38 H 1.08995 * 110.30409 * 94.88073 * 9 8 7 39 39 H 1.08999 * 109.47685 * 30.01889 * 11 10 9 40 40 H 1.08997 * 109.47185 * 150.02022 * 11 10 9 41 41 H 1.09006 * 109.47447 * 300.00013 * 12 11 10 42 42 H 1.08997 * 109.47220 * 60.00041 * 12 11 10 43 43 H 0.97005 * 120.00003 * 180.02562 * 16 15 13 44 44 H 1.08995 * 110.39570 * 333.87971 * 23 4 3 45 45 H 1.08996 * 110.39306 * 96.28605 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0373 0.9685 -1.2943 6 6 4.9562 2.0803 -1.8503 7 6 5.3131 2.8896 -0.5933 8 6 5.6626 4.3407 -0.9393 9 6 7.2097 4.2900 -0.9431 10 7 7.5686 3.1539 -0.0833 11 6 8.9007 2.9357 0.4860 12 6 9.7373 2.0960 -0.4814 13 6 11.1079 1.8719 0.1037 14 1 11.3571 2.2867 1.0693 15 6 12.0432 1.1367 -0.5930 16 7 11.7395 0.6312 -1.7685 17 14 13.7419 0.8584 0.1327 18 1 13.7354 -0.3843 0.9456 19 1 14.7336 0.7269 -0.9648 20 1 14.1070 2.0116 0.9943 21 6 6.5128 2.3380 0.1144 22 8 6.5319 1.3147 0.7651 23 6 4.0399 2.8008 0.2589 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3635 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 4.6101 0.0529 -1.1477 32 1 3.2148 0.7844 -1.9854 33 1 5.8517 1.6516 -2.3003 34 1 4.4215 2.6982 -2.5716 35 1 5.2774 4.6124 -1.9221 36 1 5.2954 5.0247 -0.1741 37 1 7.6183 5.2149 -0.5358 38 1 7.5803 4.1284 -1.9553 39 1 9.3885 3.8969 0.6481 40 1 8.8080 2.4104 1.4365 41 1 9.2495 1.1347 -0.6435 42 1 9.8299 2.6212 -1.4320 43 1 12.3974 0.1136 -2.2585 44 1 3.3196 3.5564 -0.0543 45 1 4.2809 2.9189 1.3153 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272452113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:54 Heat of formation + Delta-G solvation = -63.657570 kcal Electronic energy + Delta-G solvation = -22690.325868 eV Core-core repulsion = 19513.042832 eV Total energy + Delta-G solvation = -3177.283036 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.11431 -39.24463 -37.42874 -36.12079 -35.08402 -33.45590 -31.40564 -30.55521 -29.14804 -27.12258 -26.42872 -24.42838 -23.57414 -23.01285 -21.80545 -21.23312 -19.87165 -18.68943 -17.48396 -17.13234 -16.80903 -16.65234 -16.37590 -15.91033 -15.49746 -15.02300 -14.83224 -14.59731 -14.49122 -14.19161 -13.91292 -13.79746 -13.46297 -13.37035 -13.19857 -13.04823 -12.91968 -12.86702 -12.55308 -12.43446 -12.10129 -11.99197 -11.96000 -11.87812 -11.65980 -11.60955 -11.44755 -11.40427 -10.63731 -10.52344 -9.52601 -9.16203 -8.25647 -6.38865 1.37231 1.40239 1.50851 1.63487 2.16834 2.40554 2.93526 3.07668 3.31860 3.49328 3.51905 3.88953 4.05097 4.09542 4.17473 4.20786 4.31098 4.37979 4.48797 4.51700 4.55111 4.62453 4.69537 4.71907 4.76259 4.80418 4.81118 4.84686 4.91373 4.95073 5.03655 5.13970 5.20465 5.22538 5.32143 5.32804 5.43803 5.45090 5.60115 5.82107 6.02839 6.14029 6.24865 6.34275 6.76623 7.29511 7.32317 8.86649 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.027335 B = 0.003594 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.083357 B = 7788.726862 C = 8262.850402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C 0.054 3.946 4 N -0.552 5.552 5 C 0.050 3.950 6 C -0.114 4.114 7 C -0.104 4.104 8 C -0.100 4.100 9 C 0.092 3.908 10 N -0.625 5.625 11 C 0.143 3.857 12 C 0.026 3.974 13 C -0.546 4.546 14 H 0.067 0.933 15 C -0.001 4.001 16 N -0.933 5.933 17 Si 0.971 3.029 18 H -0.277 1.277 19 H -0.278 1.278 20 H -0.256 1.256 21 C 0.512 3.488 22 O -0.571 6.571 23 C 0.078 3.922 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.039 0.961 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.065 0.935 39 H 0.091 0.909 40 H 0.049 0.951 41 H -0.031 1.031 42 H 0.000 1.000 43 H 0.265 0.735 44 H 0.094 0.906 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.984 10.082 -1.143 24.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.160 4.160 3 C -0.073 4.073 4 N -0.276 5.276 5 C -0.077 4.077 6 C -0.152 4.152 7 C -0.108 4.108 8 C -0.138 4.138 9 C -0.030 4.030 10 N -0.358 5.358 11 C 0.021 3.979 12 C -0.012 4.012 13 C -0.584 4.584 14 H 0.085 0.915 15 C -0.199 4.199 16 N -0.573 5.573 17 Si 0.795 3.205 18 H -0.203 1.203 19 H -0.203 1.203 20 H -0.180 1.180 21 C 0.300 3.700 22 O -0.450 6.450 23 C -0.050 4.050 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.057 0.943 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.138 0.862 35 H 0.144 0.856 36 H 0.126 0.874 37 H 0.118 0.882 38 H 0.084 0.916 39 H 0.109 0.891 40 H 0.067 0.933 41 H -0.013 1.013 42 H 0.018 0.982 43 H 0.073 0.927 44 H 0.112 0.888 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.675 9.126 -0.508 23.524 hybrid contribution 1.250 -0.522 -0.358 1.401 sum -20.426 8.604 -0.866 22.181 Atomic orbital electron populations 1.21687 0.93934 1.02155 1.02379 1.21513 0.96582 0.96273 1.01585 1.22368 0.85923 0.97476 1.01571 1.63474 1.08831 1.23632 1.31667 1.22761 0.97808 0.97483 0.89692 1.22588 0.99709 0.97324 0.95628 1.21539 0.93656 0.98503 0.97096 1.22584 0.92737 0.92531 1.05939 1.22434 0.97033 0.88970 0.94522 1.48832 1.10120 1.26769 1.50030 1.21323 0.80584 1.00246 0.95711 1.19194 0.94048 0.93256 0.94748 1.21559 0.98121 1.33798 1.04960 0.91528 1.26046 1.03661 0.94968 0.95185 1.70120 1.36668 1.35925 1.14565 0.85356 0.78001 0.78998 0.78141 1.20261 1.20336 1.17999 1.20997 0.86289 0.82778 0.79901 1.90670 1.85493 1.25614 1.43223 1.22664 0.93084 0.90274 0.98969 0.92180 0.91845 0.92387 0.92750 0.93189 0.92985 0.90352 0.94271 0.90152 0.93020 0.86151 0.85639 0.87362 0.88235 0.91627 0.89080 0.93292 1.01269 0.98187 0.92669 0.88838 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.91 71.98 0.71 -1.21 16 2 C -0.12 -2.28 5.96 30.59 0.18 -2.10 16 3 C 0.05 1.00 4.53 86.30 0.39 1.39 16 4 N -0.55 -14.27 5.16 -886.91 -4.58 -18.85 16 5 C 0.05 1.31 6.18 86.72 0.54 1.85 16 6 C -0.11 -2.74 5.93 31.37 0.19 -2.55 16 7 C -0.10 -2.68 0.67 -52.74 -0.04 -2.72 16 8 C -0.10 -1.69 6.26 31.28 0.20 -1.50 16 9 C 0.09 2.30 7.37 86.91 0.64 2.94 16 10 N -0.62 -23.52 2.95 -818.21 -2.41 -25.94 16 11 C 0.14 6.41 5.88 86.38 0.51 6.92 16 12 C 0.03 1.44 5.30 29.85 0.16 1.60 16 13 C -0.55 -32.27 9.11 25.60 0.23 -32.04 16 14 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 15 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 16 N -0.93 -58.84 13.29 21.45 0.28 -58.55 16 17 Si 0.97 45.41 29.54 68.60 2.03 47.44 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 21 C 0.51 20.22 6.73 87.36 0.59 20.81 16 22 O -0.57 -28.84 17.51 -3.05 -0.05 -28.89 16 23 C 0.08 1.78 5.53 86.22 0.48 2.25 16 24 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.05 1.08 7.14 -2.39 -0.02 1.06 16 28 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.05 0.76 7.96 -2.39 -0.02 0.75 16 30 H 0.08 1.33 8.07 -2.39 -0.02 1.31 16 31 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.08 1.62 6.91 -2.39 -0.02 1.61 16 33 H 0.05 1.55 8.00 -2.39 -0.02 1.54 16 34 H 0.12 1.86 7.75 -2.39 -0.02 1.84 16 35 H 0.13 1.28 7.62 -2.39 -0.02 1.26 16 36 H 0.11 1.34 7.97 -2.39 -0.02 1.32 16 37 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 40 H 0.05 2.36 7.96 -2.39 -0.02 2.35 16 41 H -0.03 -2.05 8.14 -2.38 -0.02 -2.07 16 42 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 43 H 0.26 15.58 8.31 -92.70 -0.77 14.81 16 44 H 0.09 1.39 7.70 -2.39 -0.02 1.37 16 45 H 0.06 1.67 8.01 -2.39 -0.02 1.65 16 Total: -1.00 -80.32 357.17 1.43 -78.89 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 0.93 Total: 9.82 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: 5.24 Total: -3.92 kcal Atomic # 7 Polarization: -96.63 SS G_CDS: -6.71 Total: -103.34 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.05 Total: -28.89 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -80.32 1.43 -78.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272452113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.234 kcal (2) G-P(sol) polarization free energy of solvation -80.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds