Wall clock time and date at job start Tue Mar 31 2020 01:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47096 * 2 1 4 4 N 1.46903 * 109.47421 * 180.02562 * 3 2 1 5 5 C 1.48765 * 110.99634 * 285.35774 * 4 3 2 6 6 C 1.54457 * 104.76682 * 202.29914 * 5 4 3 7 7 C 1.54509 * 105.04287 * 23.55825 * 6 5 4 8 8 C 1.47392 * 111.00259 * 169.99895 * 4 3 2 9 9 C 1.53582 * 111.07793 * 278.33538 * 8 4 3 10 10 C 1.54717 * 101.51113 * 144.99910 * 9 8 4 11 11 N 1.46885 * 105.51855 * 335.50696 * 10 9 8 12 12 C 1.46493 * 124.37443 * 196.78078 * 11 10 9 13 13 C 1.52996 * 109.47400 * 90.01900 * 12 11 10 14 14 C 1.50702 * 109.47159 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 C 1.34759 * 111.25486 * 17.04198 * 11 10 9 23 23 O 1.21277 * 125.13999 * 178.72289 * 22 11 10 24 24 H 1.08999 * 109.47095 * 60.00000 * 1 2 3 25 25 H 1.08996 * 109.47149 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47100 * 300.00222 * 1 2 3 27 27 H 1.09000 * 109.46709 * 240.00445 * 2 1 3 28 28 H 1.08999 * 109.47095 * 120.00000 * 2 1 3 29 29 H 1.08999 * 109.47328 * 59.99917 * 3 2 1 30 30 H 1.09004 * 109.47144 * 300.00442 * 3 2 1 31 31 H 1.09003 * 110.37877 * 83.48132 * 5 4 3 32 32 H 1.08991 * 110.47754 * 321.17399 * 5 4 3 33 33 H 1.08995 * 110.32970 * 264.66616 * 6 5 4 34 34 H 1.08993 * 110.41309 * 142.48850 * 6 5 4 35 35 H 1.08997 * 110.37994 * 240.43752 * 7 6 5 36 36 H 1.08994 * 110.37915 * 118.07356 * 7 6 5 37 37 H 1.08998 * 111.01979 * 26.94114 * 9 8 4 38 38 H 1.09008 * 111.01632 * 263.05223 * 9 8 4 39 39 H 1.08999 * 110.23627 * 216.49245 * 10 9 8 40 40 H 1.09000 * 110.30566 * 94.55134 * 10 9 8 41 41 H 1.09004 * 109.46794 * 330.01999 * 12 11 10 42 42 H 1.09000 * 109.47559 * 210.02476 * 12 11 10 43 43 H 1.09004 * 109.47066 * 60.00265 * 13 12 11 44 44 H 1.08994 * 109.47405 * 300.00096 * 13 12 11 45 45 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5091 1.4425 -0.0006 5 6 4.0427 1.0745 1.3384 6 6 5.4738 1.6549 1.3649 7 6 5.4609 2.8015 0.3293 8 6 4.0372 2.7977 -0.2396 9 6 4.0405 3.1328 -1.7384 10 6 3.7138 4.6449 -1.7174 11 7 2.9996 4.8752 -0.4547 12 6 2.1964 6.0653 -0.1639 13 6 0.7505 5.8244 -0.6023 14 6 -0.0756 7.0489 -0.3037 15 1 0.3847 7.9128 0.1527 16 6 -1.4178 7.0688 -0.6189 17 7 -1.9782 6.0170 -1.1751 18 14 -2.4400 8.5894 -0.2558 19 1 -2.4057 9.5005 -1.4280 20 1 -3.8433 8.1886 0.0186 21 1 -1.8839 9.2882 0.9307 22 6 3.1833 3.8529 0.4039 23 8 2.7264 3.7928 1.5257 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 4.0705 -0.0093 1.4511 32 1 3.4370 1.5219 2.1263 33 1 6.1971 0.8923 1.0764 34 1 5.7085 2.0427 2.3561 35 1 6.1860 2.6074 -0.4610 36 1 5.6731 3.7539 0.8149 37 1 3.2681 2.5732 -2.2659 38 1 5.0216 2.9509 -2.1775 39 1 3.0775 4.9049 -2.5634 40 1 4.6325 5.2309 -1.7432 41 1 2.6029 6.9192 -0.7058 42 1 2.2224 6.2685 0.9067 43 1 0.3440 4.9704 -0.0604 44 1 0.7244 5.6212 -1.6728 45 1 -2.9225 6.0308 -1.3965 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272454757.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:38 Heat of formation + Delta-G solvation = -40.342788 kcal Electronic energy + Delta-G solvation = -23530.257012 eV Core-core repulsion = 20353.984981 eV Total energy + Delta-G solvation = -3176.272031 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.15001 -37.57034 -36.08360 -34.50588 -33.53952 -31.81086 -30.81157 -29.08364 -27.64712 -25.46986 -25.02112 -23.38563 -21.89208 -21.81891 -20.36260 -20.22620 -18.56397 -16.73554 -16.25150 -15.81007 -15.24657 -15.19989 -15.02980 -14.65940 -14.44120 -13.71455 -13.61471 -13.23443 -12.96016 -12.69123 -12.65697 -12.32303 -12.29252 -12.04782 -11.88263 -11.41187 -11.31901 -11.22087 -11.14752 -10.98409 -10.95091 -10.72798 -10.67617 -10.54663 -10.35466 -10.03148 -9.89276 -9.74454 -9.24029 -8.39575 -8.22945 -7.97461 -6.04299 -4.07882 2.92541 3.29768 3.36020 3.39432 3.53683 3.94809 4.43300 4.44670 4.52260 4.68682 4.90544 5.11029 5.14176 5.20903 5.23598 5.27671 5.31909 5.50828 5.58032 5.68954 5.74262 5.78738 5.81044 5.88105 5.89134 5.93300 5.98412 6.00254 6.09724 6.12217 6.14736 6.24003 6.36159 6.43993 6.45985 6.78429 6.90620 6.96775 7.07533 7.47596 7.64106 7.82211 7.94923 8.31277 8.63282 8.98517 9.56282 11.07009 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018706 B = 0.005088 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.500343 B = 5501.962779 C = 6323.143570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C 0.028 3.972 4 N -0.480 5.480 5 C 0.027 3.973 6 C -0.121 4.121 7 C -0.100 4.100 8 C 0.055 3.945 9 C -0.113 4.113 10 C 0.098 3.902 11 N -0.609 5.609 12 C 0.126 3.874 13 C 0.014 3.986 14 C -0.523 4.523 15 H 0.057 0.943 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.894 3.106 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C 0.502 3.498 23 O -0.530 6.530 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.019 0.981 44 H 0.017 0.983 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.593 -10.375 -0.748 17.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.100 4.100 4 N -0.203 5.203 5 C -0.100 4.100 6 C -0.159 4.159 7 C -0.138 4.138 8 C -0.039 4.039 9 C -0.151 4.151 10 C -0.025 4.025 11 N -0.342 5.342 12 C 0.006 3.994 13 C -0.024 4.024 14 C -0.562 4.562 15 H 0.075 0.925 16 C -0.142 4.142 17 N -0.531 5.531 18 Si 0.722 3.278 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 C 0.287 3.713 23 O -0.406 6.406 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.037 0.963 44 H 0.035 0.965 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.282 -10.768 -0.624 17.897 hybrid contribution -1.100 1.487 0.639 1.957 sum 13.181 -9.281 0.015 16.121 Atomic orbital electron populations 1.21743 0.95480 1.01287 1.02563 1.21385 0.95536 0.95916 1.01910 1.22547 0.86894 0.97747 1.02819 1.65429 1.08884 1.18594 1.27413 1.23232 0.95189 1.00604 0.91005 1.22316 0.96974 0.97507 0.99071 1.22091 0.93568 0.99309 0.98841 1.22127 0.95716 0.89327 0.96712 1.22528 1.03659 0.94846 0.94056 1.22148 0.96711 0.95861 0.87825 1.48678 1.48958 1.20993 1.15559 1.21812 0.93082 0.83700 1.00785 1.19378 0.88613 0.97653 0.96727 1.21080 0.94100 1.00130 1.40857 0.92519 1.24994 0.97908 0.96257 0.95036 1.69974 1.12032 1.28883 1.42183 0.86555 0.79529 0.83012 0.78692 1.20600 1.21156 1.19796 1.21011 0.81026 0.83856 0.85441 1.90668 1.52583 1.78743 1.18641 0.92355 0.92816 0.92607 0.91603 0.92441 0.92210 0.90764 0.90301 0.92145 0.91040 0.91318 0.90013 0.91204 0.89437 0.89106 0.90041 0.91459 0.91628 0.91254 0.96256 0.96501 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.16 0.37 -1.66 16 2 C -0.11 -1.45 6.05 -26.73 -0.16 -1.61 16 3 C 0.03 0.44 3.80 -3.83 -0.01 0.43 16 4 N -0.48 -6.83 5.02 -217.14 -1.09 -7.92 16 5 C 0.03 0.36 5.57 -2.03 -0.01 0.35 16 6 C -0.12 -1.34 7.01 -25.17 -0.18 -1.52 16 7 C -0.10 -1.17 6.17 -25.77 -0.16 -1.33 16 8 C 0.05 0.79 0.56 -132.25 -0.07 0.71 16 9 C -0.11 -1.38 6.29 -25.53 -0.16 -1.54 16 10 C 0.10 1.36 7.37 -2.93 -0.02 1.33 16 11 N -0.61 -11.21 2.94 -172.53 -0.51 -11.72 16 12 C 0.13 2.71 5.89 -4.05 -0.02 2.69 16 13 C 0.01 0.37 5.30 -27.88 -0.15 0.23 16 14 C -0.52 -14.87 9.11 -34.44 -0.31 -15.19 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 18 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 22 C 0.50 9.42 5.48 -11.23 -0.06 9.36 16 23 O -0.53 -11.89 14.82 5.56 0.08 -11.81 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.71 7.51 -51.93 -0.39 0.32 16 29 H 0.06 1.15 5.93 -51.93 -0.31 0.85 16 30 H 0.07 1.29 7.28 -51.93 -0.38 0.92 16 31 H 0.08 0.90 7.91 -51.93 -0.41 0.49 16 32 H 0.06 0.95 6.81 -51.93 -0.35 0.59 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.77 7.45 -51.93 -0.39 0.38 16 36 H 0.07 0.86 7.84 -51.93 -0.41 0.45 16 37 H 0.09 1.12 7.39 -51.93 -0.38 0.74 16 38 H 0.09 0.84 7.45 -51.92 -0.39 0.45 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 42 H 0.07 1.58 7.93 -51.93 -0.41 1.16 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 350.00 15.07 5.27 5.27 Total: -1.00 -32.48 350.00 -9.59 -42.07 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -8.01 Total: -0.29 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -1.06 Total: -6.12 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: -0.86 Total: -45.86 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.08 Total: -11.81 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.48 -9.59 -42.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272454757.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.729 kcal (2) G-P(sol) polarization free energy of solvation -32.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds