Wall clock time and date at job start Tue Mar 31 2020 01:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47096 * 2 1 4 4 N 1.46903 * 109.47421 * 180.02562 * 3 2 1 5 5 C 1.48765 * 110.99634 * 285.35774 * 4 3 2 6 6 C 1.54457 * 104.76682 * 202.29914 * 5 4 3 7 7 C 1.54509 * 105.04287 * 23.55825 * 6 5 4 8 8 C 1.47392 * 111.00259 * 169.99895 * 4 3 2 9 9 C 1.53582 * 111.07793 * 278.33538 * 8 4 3 10 10 C 1.54717 * 101.51113 * 144.99910 * 9 8 4 11 11 N 1.46885 * 105.51855 * 335.50696 * 10 9 8 12 12 C 1.46493 * 124.37443 * 196.78078 * 11 10 9 13 13 C 1.52996 * 109.47400 * 90.01900 * 12 11 10 14 14 C 1.50702 * 109.47159 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 C 1.34759 * 111.25486 * 17.04198 * 11 10 9 23 23 O 1.21277 * 125.13999 * 178.72289 * 22 11 10 24 24 H 1.08999 * 109.47095 * 60.00000 * 1 2 3 25 25 H 1.08996 * 109.47149 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47100 * 300.00222 * 1 2 3 27 27 H 1.09000 * 109.46709 * 240.00445 * 2 1 3 28 28 H 1.08999 * 109.47095 * 120.00000 * 2 1 3 29 29 H 1.08999 * 109.47328 * 59.99917 * 3 2 1 30 30 H 1.09004 * 109.47144 * 300.00442 * 3 2 1 31 31 H 1.09003 * 110.37877 * 83.48132 * 5 4 3 32 32 H 1.08991 * 110.47754 * 321.17399 * 5 4 3 33 33 H 1.08995 * 110.32970 * 264.66616 * 6 5 4 34 34 H 1.08993 * 110.41309 * 142.48850 * 6 5 4 35 35 H 1.08997 * 110.37994 * 240.43752 * 7 6 5 36 36 H 1.08994 * 110.37915 * 118.07356 * 7 6 5 37 37 H 1.08998 * 111.01979 * 26.94114 * 9 8 4 38 38 H 1.09008 * 111.01632 * 263.05223 * 9 8 4 39 39 H 1.08999 * 110.23627 * 216.49245 * 10 9 8 40 40 H 1.09000 * 110.30566 * 94.55134 * 10 9 8 41 41 H 1.09004 * 109.46794 * 330.01999 * 12 11 10 42 42 H 1.09000 * 109.47559 * 210.02476 * 12 11 10 43 43 H 1.09004 * 109.47066 * 60.00265 * 13 12 11 44 44 H 1.08994 * 109.47405 * 300.00096 * 13 12 11 45 45 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5091 1.4425 -0.0006 5 6 4.0427 1.0745 1.3384 6 6 5.4738 1.6549 1.3649 7 6 5.4609 2.8015 0.3293 8 6 4.0372 2.7977 -0.2396 9 6 4.0405 3.1328 -1.7384 10 6 3.7138 4.6449 -1.7174 11 7 2.9996 4.8752 -0.4547 12 6 2.1964 6.0653 -0.1639 13 6 0.7505 5.8244 -0.6023 14 6 -0.0756 7.0489 -0.3037 15 1 0.3847 7.9128 0.1527 16 6 -1.4178 7.0688 -0.6189 17 7 -1.9782 6.0170 -1.1751 18 14 -2.4400 8.5894 -0.2558 19 1 -2.4057 9.5005 -1.4280 20 1 -3.8433 8.1886 0.0186 21 1 -1.8839 9.2882 0.9307 22 6 3.1833 3.8529 0.4039 23 8 2.7264 3.7928 1.5257 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 4.0705 -0.0093 1.4511 32 1 3.4370 1.5219 2.1263 33 1 6.1971 0.8923 1.0764 34 1 5.7085 2.0427 2.3561 35 1 6.1860 2.6074 -0.4610 36 1 5.6731 3.7539 0.8149 37 1 3.2681 2.5732 -2.2659 38 1 5.0216 2.9509 -2.1775 39 1 3.0775 4.9049 -2.5634 40 1 4.6325 5.2309 -1.7432 41 1 2.6029 6.9192 -0.7058 42 1 2.2224 6.2685 0.9067 43 1 0.3440 4.9704 -0.0604 44 1 0.7244 5.6212 -1.6728 45 1 -2.9225 6.0308 -1.3965 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272454757.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:38 Heat of formation + Delta-G solvation = -62.128327 kcal Electronic energy + Delta-G solvation = -23531.201704 eV Core-core repulsion = 20353.984981 eV Total energy + Delta-G solvation = -3177.216723 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.41882 -38.88243 -37.58905 -35.87663 -35.33217 -33.50448 -31.87990 -30.79521 -28.81637 -27.04542 -26.54199 -24.65142 -23.55811 -22.95202 -21.80318 -21.36912 -19.97166 -18.74028 -17.60277 -17.28048 -16.79125 -16.48758 -16.28597 -16.14331 -15.87353 -15.12326 -14.86022 -14.68753 -14.41903 -14.23712 -14.04794 -13.77386 -13.61832 -13.45580 -13.15326 -12.90706 -12.83061 -12.61141 -12.47837 -12.32362 -12.17994 -12.12859 -12.00749 -11.87185 -11.76713 -11.58528 -11.51766 -11.42747 -11.06778 -10.64216 -9.66731 -9.43434 -8.27548 -6.41108 1.35859 1.38605 1.47394 1.50387 2.09839 2.38076 2.77027 3.05748 3.34155 3.46177 3.59605 3.82984 3.98817 4.07919 4.12326 4.21503 4.25133 4.27256 4.37804 4.51265 4.53404 4.62776 4.65849 4.69176 4.74827 4.80723 4.84680 4.87562 4.97518 5.02219 5.04679 5.09031 5.14066 5.19059 5.26365 5.28964 5.31412 5.39947 5.54305 5.75544 5.77219 5.83870 6.10307 6.23736 6.73754 7.15055 7.29079 8.84509 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018706 B = 0.005088 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.500343 B = 5501.962779 C = 6323.143570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.100 4.100 3 C 0.036 3.964 4 N -0.466 5.466 5 C 0.023 3.977 6 C -0.116 4.116 7 C -0.096 4.096 8 C 0.054 3.946 9 C -0.102 4.102 10 C 0.092 3.908 11 N -0.618 5.618 12 C 0.141 3.859 13 C 0.029 3.971 14 C -0.547 4.547 15 H 0.066 0.934 16 C 0.002 3.998 17 N -0.932 5.932 18 Si 0.971 3.029 19 H -0.264 1.264 20 H -0.283 1.283 21 H -0.264 1.264 22 C 0.487 3.513 23 O -0.580 6.580 24 H 0.044 0.956 25 H 0.081 0.919 26 H 0.034 0.966 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.015 0.985 30 H 0.050 0.950 31 H 0.101 0.899 32 H 0.024 0.976 33 H 0.103 0.897 34 H 0.066 0.934 35 H 0.121 0.879 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.138 0.862 39 H 0.077 0.923 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.049 0.951 43 H -0.032 1.032 44 H -0.001 1.001 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.051 -10.617 -1.948 20.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.138 4.138 3 C -0.092 4.092 4 N -0.189 5.189 5 C -0.105 4.105 6 C -0.154 4.154 7 C -0.135 4.135 8 C -0.040 4.040 9 C -0.140 4.140 10 C -0.030 4.030 11 N -0.351 5.351 12 C 0.019 3.981 13 C -0.009 4.009 14 C -0.585 4.585 15 H 0.084 0.916 16 C -0.196 4.196 17 N -0.571 5.571 18 Si 0.795 3.205 19 H -0.189 1.189 20 H -0.209 1.209 21 H -0.188 1.188 22 C 0.274 3.726 23 O -0.460 6.460 24 H 0.063 0.937 25 H 0.100 0.900 26 H 0.053 0.947 27 H 0.103 0.897 28 H 0.088 0.912 29 H 0.033 0.967 30 H 0.069 0.931 31 H 0.119 0.881 32 H 0.042 0.958 33 H 0.122 0.878 34 H 0.085 0.915 35 H 0.139 0.861 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.156 0.844 39 H 0.095 0.905 40 H 0.122 0.878 41 H 0.110 0.890 42 H 0.068 0.932 43 H -0.013 1.013 44 H 0.017 0.983 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.778 -11.015 -1.855 20.156 hybrid contribution -1.907 1.533 1.027 2.654 sum 14.871 -9.482 -0.827 17.656 Atomic orbital electron populations 1.21751 0.95885 1.02521 1.00865 1.21343 0.95140 0.94009 1.03304 1.22387 0.88417 0.98974 0.99462 1.65542 1.07181 1.18247 1.27922 1.23325 0.96133 1.01811 0.89209 1.22355 0.95807 0.98061 0.99159 1.22205 0.92042 0.99235 0.99975 1.22328 0.96364 0.87501 0.97803 1.22622 1.05866 0.93106 0.92364 1.22510 0.97478 0.97844 0.85212 1.48803 1.48657 1.20042 1.17567 1.21361 0.90890 0.86094 0.99743 1.19157 0.91753 0.95311 0.94726 1.21529 0.95018 1.00911 1.41068 0.91592 1.26024 0.99327 0.99801 0.94491 1.70121 1.12562 1.31310 1.43117 0.85361 0.77306 0.78695 0.79178 1.18906 1.20868 1.18835 1.22022 0.80911 0.84739 0.84918 1.90628 1.54598 1.79730 1.21064 0.93721 0.90023 0.94680 0.89686 0.91231 0.96696 0.93114 0.88093 0.95788 0.87817 0.91474 0.86075 0.91972 0.90489 0.84407 0.90496 0.87769 0.88987 0.93234 1.01323 0.98265 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.21 9.91 71.98 0.71 -3.49 16 2 C -0.10 -2.65 6.05 30.59 0.19 -2.47 16 3 C 0.04 1.22 3.80 86.30 0.33 1.55 16 4 N -0.47 -12.96 5.02 -840.90 -4.22 -17.18 16 5 C 0.02 0.58 5.57 86.44 0.48 1.07 16 6 C -0.12 -2.26 7.01 31.60 0.22 -2.04 16 7 C -0.10 -1.95 6.17 31.21 0.19 -1.76 16 8 C 0.05 1.48 0.56 2.84 0.00 1.48 16 9 C -0.10 -2.23 6.29 31.38 0.20 -2.03 16 10 C 0.09 2.37 7.37 86.89 0.64 3.01 16 11 N -0.62 -23.33 2.94 -818.15 -2.41 -25.74 16 12 C 0.14 6.28 5.89 86.38 0.51 6.79 16 13 C 0.03 1.60 5.30 29.85 0.16 1.75 16 14 C -0.55 -32.10 9.11 25.60 0.23 -31.87 16 15 H 0.07 3.66 7.74 -2.91 -0.02 3.63 16 16 C 0.00 0.11 5.46 84.66 0.46 0.57 16 17 N -0.93 -58.33 13.29 21.45 0.28 -58.04 16 18 Si 0.97 45.10 29.54 68.60 2.03 47.13 16 19 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 20 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 21 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 22 C 0.49 19.04 5.48 87.51 0.48 19.51 16 23 O -0.58 -28.13 14.82 -3.02 -0.04 -28.18 16 24 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.07 1.68 7.51 -2.39 -0.02 1.66 16 29 H 0.01 0.63 5.93 -2.39 -0.01 0.62 16 30 H 0.05 1.91 7.28 -2.38 -0.02 1.89 16 31 H 0.10 2.10 7.91 -2.39 -0.02 2.09 16 32 H 0.02 0.79 6.81 -2.39 -0.02 0.77 16 33 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.12 1.55 7.45 -2.39 -0.02 1.53 16 36 H 0.06 1.38 7.84 -2.39 -0.02 1.36 16 37 H 0.08 1.87 7.39 -2.39 -0.02 1.85 16 38 H 0.14 1.78 7.45 -2.38 -0.02 1.76 16 39 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.09 3.58 8.14 -2.38 -0.02 3.56 16 42 H 0.05 2.38 7.93 -2.39 -0.02 2.36 16 43 H -0.03 -2.07 8.14 -2.38 -0.02 -2.08 16 44 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 45 H 0.26 15.50 8.31 -92.70 -0.77 14.73 16 Total: -1.00 -77.03 350.00 1.37 -75.66 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.94 Total: 14.27 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: 4.80 Total: -7.92 kcal Atomic # 7 Polarization: -94.62 SS G_CDS: -6.35 Total: -100.97 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -0.04 Total: -28.18 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -77.03 1.37 -75.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272454757.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.532 kcal (2) G-P(sol) polarization free energy of solvation -77.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds