Wall clock time and date at job start Tue Mar 31 2020 01:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50701 * 119.99645 * 2 1 4 4 H 1.08993 * 109.47553 * 0.02562 * 3 2 1 5 5 C 1.52995 * 109.47369 * 239.99841 * 3 2 1 6 6 C 1.52999 * 109.47114 * 65.00371 * 5 3 2 7 7 C 1.53006 * 109.46687 * 120.00251 * 3 2 1 8 8 C 1.50694 * 109.47121 * 294.99746 * 7 3 2 9 9 O 1.21289 * 120.00324 * 0.02562 * 8 7 3 10 10 N 1.34780 * 120.00306 * 180.02562 * 8 7 3 11 11 C 1.46502 * 120.00122 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46863 * 180.19732 * 11 10 8 13 13 N 1.46503 * 112.84880 * 292.10186 * 12 11 10 14 14 C 1.36935 * 119.99828 * 294.86440 * 13 12 11 15 15 H 1.07995 * 120.00241 * 353.77221 * 14 13 12 16 16 C 1.38820 * 119.99412 * 173.76963 * 14 13 12 17 17 N 1.31613 * 120.00363 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99327 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47216 * 90.00483 * 18 16 14 20 20 H 1.48503 * 109.46895 * 209.99877 * 18 16 14 21 21 H 1.48491 * 109.47367 * 329.99582 * 18 16 14 22 22 C 1.53782 * 113.61461 * 160.79680 * 12 11 10 23 23 C 1.53780 * 87.07962 * 220.01878 * 22 12 11 24 24 C 1.53772 * 87.08286 * 25.43022 * 23 22 12 25 25 H 1.07998 * 119.99557 * 179.97438 * 1 2 3 26 26 H 1.07992 * 119.99950 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.00455 * 180.02562 * 2 1 3 28 28 H 1.09007 * 109.47269 * 305.00761 * 5 3 2 29 29 H 1.08996 * 109.47778 * 185.00459 * 5 3 2 30 30 H 1.08996 * 109.47247 * 60.00056 * 6 5 3 31 31 H 1.09004 * 109.47041 * 300.00024 * 6 5 3 32 32 H 1.08998 * 109.47343 * 180.02562 * 6 5 3 33 33 H 1.08997 * 109.47453 * 55.00165 * 7 3 2 34 34 H 1.09004 * 109.46866 * 174.99984 * 7 3 2 35 35 H 0.96999 * 119.99626 * 359.97438 * 10 8 7 36 36 H 1.08994 * 109.47231 * 300.19496 * 11 10 8 37 37 H 1.08994 * 109.46818 * 60.19656 * 11 10 8 38 38 H 0.97005 * 119.99820 * 114.86544 * 13 12 11 39 39 H 0.96996 * 119.99826 * 179.97438 * 17 16 14 40 40 H 1.09004 * 113.60978 * 334.56718 * 22 12 11 41 41 H 1.08997 * 113.61549 * 105.46490 * 22 12 11 42 42 H 1.08999 * 113.61205 * 270.87829 * 23 22 12 43 43 H 1.09004 * 113.61194 * 139.98585 * 23 22 12 44 44 H 1.08995 * 113.61602 * 220.01505 * 24 23 22 45 45 H 1.09006 * 113.61656 * 89.11889 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9431 1.3863 -1.2492 6 6 2.0564 1.4309 -2.4953 7 6 2.9431 1.3861 1.2493 8 6 2.0698 1.4300 2.4766 9 8 0.8626 1.3990 2.3634 10 7 2.6301 1.5036 3.7002 11 6 1.7810 1.5456 4.8933 12 6 2.6605 1.6323 6.1423 13 7 3.4332 0.4105 6.3799 14 6 2.7884 -0.7602 6.6780 15 1 1.7202 -0.7630 6.8371 16 6 3.5079 -1.9434 6.7756 17 7 4.8097 -1.9399 6.5821 18 14 2.6281 -3.5405 7.1815 19 1 2.1929 -4.1994 5.9239 20 1 3.5514 -4.4408 7.9180 21 1 1.4411 -3.2511 8.0254 22 6 1.9151 2.1438 7.3863 23 6 3.1835 2.9471 7.7192 24 6 3.5022 2.9173 6.2151 25 1 -0.5399 -0.9353 -0.0004 26 1 -0.5400 0.9352 0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 3.5906 0.5106 -1.2952 29 1 3.5540 2.2879 -1.2055 30 1 1.4090 2.3065 -2.4493 31 1 1.4456 0.5292 -2.5390 32 1 2.6831 1.4882 -3.3852 33 1 3.5906 0.5105 1.2952 34 1 3.5540 2.2879 1.2057 35 1 3.5955 1.5280 3.7908 36 1 1.1305 2.4189 4.8458 37 1 1.1734 0.6419 4.9388 38 1 4.4015 0.4308 6.3261 39 1 5.3124 -2.7665 6.6507 40 1 1.0521 2.7673 7.1526 41 1 1.6900 1.3626 8.1123 42 1 3.9010 2.3977 8.3285 43 1 2.9790 3.9469 8.1025 44 1 4.5582 2.7606 5.9956 45 1 3.0731 3.7523 5.6611 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273140529.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:18 Heat of formation + Delta-G solvation = -5.239323 kcal Electronic energy + Delta-G solvation = -22534.449133 eV Core-core repulsion = 19359.699302 eV Total energy + Delta-G solvation = -3174.749831 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.61705 -38.59438 -36.55361 -33.75351 -33.25490 -31.66557 -30.51900 -29.90248 -27.17836 -25.29025 -24.53573 -23.62797 -21.75025 -21.47943 -19.98113 -19.36313 -18.19519 -17.13433 -16.62164 -15.62567 -15.38047 -15.06388 -14.59498 -14.49450 -14.23791 -13.88771 -13.81085 -13.32713 -13.13459 -13.02904 -12.57363 -12.17048 -12.09835 -11.82788 -11.55137 -11.34098 -11.18815 -11.16413 -11.00506 -10.85314 -10.77877 -10.41155 -10.36362 -10.22594 -10.09080 -9.73034 -9.52894 -9.41414 -8.94442 -8.81929 -8.37381 -7.03935 -5.83152 -3.12475 2.63741 3.16994 3.41348 3.47646 3.48021 3.73809 4.53711 4.80640 4.83727 5.00533 5.19691 5.23327 5.25839 5.28440 5.34154 5.43804 5.44930 5.55704 5.57476 5.61938 5.76062 5.79627 5.88525 5.89606 5.92603 6.08283 6.11003 6.14870 6.19843 6.19931 6.32483 6.34990 6.41170 6.58026 6.73497 6.91895 6.94009 7.00399 7.12189 7.13157 7.69817 8.10275 8.35925 8.78080 9.47208 10.01058 10.36374 11.39013 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014456 B = 0.004814 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.410408 B = 5815.564845 C = 6921.871278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.148 4.148 3 C -0.042 4.042 4 H 0.079 0.921 5 C -0.117 4.117 6 C -0.150 4.150 7 C -0.136 4.136 8 C 0.507 3.493 9 O -0.547 6.547 10 N -0.709 5.709 11 C 0.122 3.878 12 C 0.174 3.826 13 N -0.699 5.699 14 C -0.235 4.235 15 H 0.070 0.930 16 C -0.008 4.008 17 N -0.932 5.932 18 Si 0.904 3.096 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.281 1.281 22 C -0.151 4.151 23 C -0.128 4.128 24 C -0.144 4.144 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.101 0.899 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.399 0.601 36 H 0.051 0.949 37 H 0.066 0.934 38 H 0.386 0.614 39 H 0.255 0.745 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.053 0.947 44 H 0.064 0.936 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.944 9.999 -11.290 15.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C -0.061 4.061 4 H 0.097 0.903 5 C -0.154 4.154 6 C -0.208 4.208 7 C -0.176 4.176 8 C 0.292 3.708 9 O -0.425 6.425 10 N -0.358 5.358 11 C -0.004 4.004 12 C 0.081 3.919 13 N -0.340 5.340 14 C -0.365 4.365 15 H 0.088 0.912 16 C -0.204 4.204 17 N -0.579 5.579 18 Si 0.735 3.265 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.207 1.207 22 C -0.192 4.192 23 C -0.166 4.166 24 C -0.182 4.182 25 H 0.106 0.894 26 H 0.112 0.888 27 H 0.119 0.881 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.232 0.768 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.220 0.780 39 H 0.065 0.935 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.906 9.809 -11.316 15.255 hybrid contribution 0.373 -1.126 0.415 1.257 sum -2.534 8.682 -10.901 14.165 Atomic orbital electron populations 1.23630 0.95922 1.01053 0.99703 1.22630 0.96004 0.97142 1.00826 1.20120 0.96468 0.96946 0.92518 0.90298 1.21547 0.97889 1.01912 0.94075 1.21756 0.99801 1.02082 0.97116 1.21706 0.98769 1.04106 0.93012 1.20538 0.89081 0.76404 0.84736 1.90662 1.14848 1.50152 1.86830 1.45809 1.10595 1.73834 1.05594 1.21785 0.93323 1.00774 0.84542 1.20813 0.92231 0.87351 0.91522 1.42052 1.05183 1.03329 1.83413 1.19105 0.92551 0.85265 1.39625 0.91184 1.24707 0.95638 0.97588 1.02485 1.69647 1.05298 1.26675 1.56327 0.86242 0.78487 0.83927 0.77871 1.21725 1.21812 1.20697 1.23314 0.96204 0.99547 1.00095 1.22632 0.98835 0.99008 0.96125 1.23133 1.00118 0.97781 0.97144 0.89400 0.88808 0.88136 0.91812 0.91933 0.92919 0.92405 0.93092 0.88927 0.89268 0.76776 0.93043 0.91561 0.77959 0.93523 0.91370 0.90781 0.90063 0.92784 0.91712 0.90503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 13.22 29.01 0.38 -1.94 16 2 C -0.15 -2.01 6.76 -36.03 -0.24 -2.25 16 3 C -0.04 -0.51 1.82 -91.77 -0.17 -0.67 16 4 H 0.08 1.04 7.60 -51.93 -0.39 0.64 16 5 C -0.12 -1.12 5.39 -26.73 -0.14 -1.27 16 6 C -0.15 -1.36 9.73 37.16 0.36 -1.00 16 7 C -0.14 -1.71 5.16 -27.88 -0.14 -1.86 16 8 C 0.51 8.48 7.58 -10.99 -0.08 8.39 16 9 O -0.55 -10.77 14.17 5.55 0.08 -10.69 16 10 N -0.71 -11.98 5.42 -60.30 -0.33 -12.31 16 11 C 0.12 2.27 5.08 -4.04 -0.02 2.25 16 12 C 0.17 3.21 0.80 -131.01 -0.11 3.10 16 13 N -0.70 -16.07 5.19 -46.48 -0.24 -16.32 16 14 C -0.23 -6.19 9.05 -15.06 -0.14 -6.33 16 15 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 16 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 17 N -0.93 -26.97 13.07 55.49 0.73 -26.25 16 18 Si 0.90 22.24 29.55 -169.99 -5.02 17.22 16 19 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 C -0.15 -2.61 7.28 -25.92 -0.19 -2.80 16 23 C -0.13 -2.00 7.99 -25.92 -0.21 -2.21 16 24 C -0.14 -2.20 7.04 -25.93 -0.18 -2.38 16 25 H 0.09 1.15 8.06 -52.49 -0.42 0.73 16 26 H 0.09 1.33 7.83 -52.49 -0.41 0.92 16 27 H 0.10 1.34 8.06 -52.49 -0.42 0.92 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.55 7.38 -51.93 -0.38 0.17 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.40 6.29 8.30 -40.82 -0.34 5.95 16 36 H 0.05 0.91 8.01 -51.93 -0.42 0.49 16 37 H 0.07 1.46 7.80 -51.93 -0.41 1.05 16 38 H 0.39 9.45 7.87 -40.82 -0.32 9.12 16 39 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 40 H 0.07 1.04 8.01 -51.93 -0.42 0.63 16 41 H 0.07 1.43 7.87 -51.93 -0.41 1.02 16 42 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.98 8.09 -51.93 -0.42 0.56 16 45 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 LS Contribution 365.38 15.07 5.51 5.51 Total: -1.00 -29.82 365.38 -8.36 -38.18 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -8.11 Total: 13.92 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -0.97 Total: -9.27 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: 0.16 Total: -54.87 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.08 Total: -10.69 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.82 -8.36 -38.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273140529.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.945 kcal (2) G-P(sol) polarization free energy of solvation -29.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds