Wall clock time and date at job start Tue Mar 31 2020 01:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50701 * 119.99645 * 2 1 4 4 H 1.08993 * 109.47553 * 0.02562 * 3 2 1 5 5 C 1.52995 * 109.47369 * 239.99841 * 3 2 1 6 6 C 1.52999 * 109.47114 * 65.00371 * 5 3 2 7 7 C 1.53006 * 109.46687 * 120.00251 * 3 2 1 8 8 C 1.50694 * 109.47121 * 294.99746 * 7 3 2 9 9 O 1.21289 * 120.00324 * 0.02562 * 8 7 3 10 10 N 1.34780 * 120.00306 * 180.02562 * 8 7 3 11 11 C 1.46502 * 120.00122 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46863 * 180.19732 * 11 10 8 13 13 N 1.46503 * 112.84880 * 292.10186 * 12 11 10 14 14 C 1.36935 * 119.99828 * 294.86440 * 13 12 11 15 15 H 1.07995 * 120.00241 * 353.77221 * 14 13 12 16 16 C 1.38820 * 119.99412 * 173.76963 * 14 13 12 17 17 N 1.31613 * 120.00363 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99327 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47216 * 90.00483 * 18 16 14 20 20 H 1.48503 * 109.46895 * 209.99877 * 18 16 14 21 21 H 1.48491 * 109.47367 * 329.99582 * 18 16 14 22 22 C 1.53782 * 113.61461 * 160.79680 * 12 11 10 23 23 C 1.53780 * 87.07962 * 220.01878 * 22 12 11 24 24 C 1.53772 * 87.08286 * 25.43022 * 23 22 12 25 25 H 1.07998 * 119.99557 * 179.97438 * 1 2 3 26 26 H 1.07992 * 119.99950 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.00455 * 180.02562 * 2 1 3 28 28 H 1.09007 * 109.47269 * 305.00761 * 5 3 2 29 29 H 1.08996 * 109.47778 * 185.00459 * 5 3 2 30 30 H 1.08996 * 109.47247 * 60.00056 * 6 5 3 31 31 H 1.09004 * 109.47041 * 300.00024 * 6 5 3 32 32 H 1.08998 * 109.47343 * 180.02562 * 6 5 3 33 33 H 1.08997 * 109.47453 * 55.00165 * 7 3 2 34 34 H 1.09004 * 109.46866 * 174.99984 * 7 3 2 35 35 H 0.96999 * 119.99626 * 359.97438 * 10 8 7 36 36 H 1.08994 * 109.47231 * 300.19496 * 11 10 8 37 37 H 1.08994 * 109.46818 * 60.19656 * 11 10 8 38 38 H 0.97005 * 119.99820 * 114.86544 * 13 12 11 39 39 H 0.96996 * 119.99826 * 179.97438 * 17 16 14 40 40 H 1.09004 * 113.60978 * 334.56718 * 22 12 11 41 41 H 1.08997 * 113.61549 * 105.46490 * 22 12 11 42 42 H 1.08999 * 113.61205 * 270.87829 * 23 22 12 43 43 H 1.09004 * 113.61194 * 139.98585 * 23 22 12 44 44 H 1.08995 * 113.61602 * 220.01505 * 24 23 22 45 45 H 1.09006 * 113.61656 * 89.11889 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9431 1.3863 -1.2492 6 6 2.0564 1.4309 -2.4953 7 6 2.9431 1.3861 1.2493 8 6 2.0698 1.4300 2.4766 9 8 0.8626 1.3990 2.3634 10 7 2.6301 1.5036 3.7002 11 6 1.7810 1.5456 4.8933 12 6 2.6605 1.6323 6.1423 13 7 3.4332 0.4105 6.3799 14 6 2.7884 -0.7602 6.6780 15 1 1.7202 -0.7630 6.8371 16 6 3.5079 -1.9434 6.7756 17 7 4.8097 -1.9399 6.5821 18 14 2.6281 -3.5405 7.1815 19 1 2.1929 -4.1994 5.9239 20 1 3.5514 -4.4408 7.9180 21 1 1.4411 -3.2511 8.0254 22 6 1.9151 2.1438 7.3863 23 6 3.1835 2.9471 7.7192 24 6 3.5022 2.9173 6.2151 25 1 -0.5399 -0.9353 -0.0004 26 1 -0.5400 0.9352 0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 3.5906 0.5106 -1.2952 29 1 3.5540 2.2879 -1.2055 30 1 1.4090 2.3065 -2.4493 31 1 1.4456 0.5292 -2.5390 32 1 2.6831 1.4882 -3.3852 33 1 3.5906 0.5105 1.2952 34 1 3.5540 2.2879 1.2057 35 1 3.5955 1.5280 3.7908 36 1 1.1305 2.4189 4.8458 37 1 1.1734 0.6419 4.9388 38 1 4.4015 0.4308 6.3261 39 1 5.3124 -2.7665 6.6507 40 1 1.0521 2.7673 7.1526 41 1 1.6900 1.3626 8.1123 42 1 3.9010 2.3977 8.3285 43 1 2.9790 3.9469 8.1025 44 1 4.5582 2.7606 5.9956 45 1 3.0731 3.7523 5.6611 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273140529.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:18 Heat of formation + Delta-G solvation = -23.214174 kcal Electronic energy + Delta-G solvation = -22535.228581 eV Core-core repulsion = 19359.699302 eV Total energy + Delta-G solvation = -3175.529279 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.97809 -39.96111 -37.59631 -35.25166 -35.11222 -32.60319 -31.99647 -31.37560 -28.58543 -26.72012 -25.91461 -25.15733 -23.02960 -22.48045 -21.28643 -20.42881 -19.69618 -19.10977 -17.93128 -17.05813 -16.64842 -16.45732 -15.99068 -15.79473 -15.51471 -15.33609 -15.09175 -14.69127 -14.50167 -14.24116 -13.96487 -13.57790 -13.10051 -12.98927 -12.96672 -12.92774 -12.74588 -12.57097 -12.18358 -12.12440 -12.02544 -11.93930 -11.65747 -11.59730 -11.48192 -11.34739 -10.98926 -10.84637 -10.66561 -10.01981 -9.80456 -8.97861 -7.94780 -5.20954 1.43175 1.45243 1.51647 1.54862 1.85475 2.44501 2.54419 3.37598 3.75242 3.81072 3.86497 3.88887 3.96199 4.01481 4.11644 4.24137 4.38498 4.42459 4.47908 4.61990 4.66487 4.71009 4.84698 4.86032 4.90775 4.93042 5.01447 5.03421 5.08949 5.10455 5.13485 5.20394 5.31709 5.42031 5.42989 5.48718 5.56603 5.67331 5.73640 5.85110 6.05312 6.30047 6.77489 7.36216 7.45715 8.10486 8.34480 9.27698 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014456 B = 0.004814 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.410408 B = 5815.564845 C = 6921.871278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.151 4.151 3 C -0.039 4.039 4 H 0.067 0.933 5 C -0.111 4.111 6 C -0.150 4.150 7 C -0.129 4.129 8 C 0.499 3.501 9 O -0.580 6.580 10 N -0.707 5.707 11 C 0.132 3.868 12 C 0.158 3.842 13 N -0.704 5.704 14 C -0.223 4.223 15 H 0.063 0.937 16 C -0.063 4.063 17 N -0.961 5.961 18 Si 0.954 3.046 19 H -0.295 1.295 20 H -0.294 1.294 21 H -0.275 1.275 22 C -0.152 4.152 23 C -0.121 4.121 24 C -0.125 4.125 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.101 0.899 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.122 0.878 35 H 0.405 0.595 36 H 0.065 0.935 37 H 0.023 0.977 38 H 0.378 0.622 39 H 0.249 0.751 40 H 0.092 0.908 41 H 0.045 0.955 42 H 0.061 0.939 43 H 0.085 0.915 44 H 0.068 0.932 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.385 11.821 -12.058 16.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.169 4.169 3 C -0.058 4.058 4 H 0.086 0.914 5 C -0.148 4.148 6 C -0.208 4.208 7 C -0.168 4.168 8 C 0.287 3.713 9 O -0.461 6.461 10 N -0.357 5.357 11 C 0.005 3.995 12 C 0.067 3.933 13 N -0.344 5.344 14 C -0.355 4.355 15 H 0.081 0.919 16 C -0.256 4.256 17 N -0.611 5.611 18 Si 0.785 3.215 19 H -0.223 1.223 20 H -0.220 1.220 21 H -0.200 1.200 22 C -0.192 4.192 23 C -0.158 4.158 24 C -0.162 4.162 25 H 0.108 0.892 26 H 0.106 0.894 27 H 0.119 0.881 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.117 0.883 34 H 0.140 0.860 35 H 0.240 0.760 36 H 0.083 0.917 37 H 0.042 0.958 38 H 0.211 0.789 39 H 0.058 0.942 40 H 0.110 0.890 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.104 0.896 44 H 0.086 0.914 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.364 11.665 -12.084 16.961 hybrid contribution 0.115 -1.631 0.653 1.760 sum -2.249 10.034 -11.431 15.375 Atomic orbital electron populations 1.23669 0.96348 1.00946 1.00774 1.22859 0.96064 0.98097 0.99915 1.20127 0.96512 0.95513 0.93632 0.91417 1.21523 0.97588 1.03034 0.92694 1.21754 0.99874 1.01553 0.97571 1.21754 0.98313 1.05969 0.90777 1.21324 0.89175 0.75210 0.85605 1.90651 1.16563 1.51529 1.87322 1.45826 1.10770 1.73780 1.05341 1.21560 0.93275 0.99240 0.85379 1.21110 0.93179 0.87156 0.91863 1.42081 1.04959 1.03998 1.83322 1.19282 0.92250 0.86538 1.37423 0.91900 1.25278 0.96293 1.00031 1.04009 1.69754 1.06204 1.26732 1.58431 0.85427 0.77691 0.81097 0.77308 1.22287 1.22032 1.20028 1.23343 0.97916 0.99421 0.98486 1.22558 0.97011 0.99991 0.96240 1.23078 0.99871 0.96202 0.97088 0.89169 0.89407 0.88083 0.91347 0.90098 0.92982 0.93452 0.91603 0.88303 0.85954 0.75960 0.91668 0.95807 0.78914 0.94155 0.88968 0.93635 0.92051 0.89639 0.91355 0.87758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.10 13.22 67.78 0.90 -4.20 16 2 C -0.15 -4.04 6.76 25.64 0.17 -3.87 16 3 C -0.04 -0.88 1.82 -11.54 -0.02 -0.90 16 4 H 0.07 1.70 7.60 -2.39 -0.02 1.69 16 5 C -0.11 -1.85 5.39 30.59 0.16 -1.69 16 6 C -0.15 -2.43 9.73 71.98 0.70 -1.73 16 7 C -0.13 -2.95 5.16 29.85 0.15 -2.80 16 8 C 0.50 16.14 7.58 87.65 0.66 16.80 16 9 O -0.58 -22.75 14.17 -3.06 -0.04 -22.79 16 10 N -0.71 -23.05 5.42 -463.06 -2.51 -25.56 16 11 C 0.13 4.83 5.08 86.38 0.44 5.26 16 12 C 0.16 5.67 0.80 4.13 0.00 5.68 16 13 N -0.70 -32.40 5.19 -300.96 -1.56 -33.96 16 14 C -0.22 -11.91 9.05 84.04 0.76 -11.15 16 15 H 0.06 3.40 7.83 -2.91 -0.02 3.38 16 16 C -0.06 -3.54 5.50 84.87 0.47 -3.07 16 17 N -0.96 -56.33 13.07 21.65 0.28 -56.05 16 18 Si 0.95 46.37 29.55 68.60 2.03 48.40 16 19 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 20 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 21 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 22 C -0.15 -5.01 7.28 31.12 0.23 -4.78 16 23 C -0.12 -3.44 7.99 31.12 0.25 -3.19 16 24 C -0.12 -3.44 7.04 31.12 0.22 -3.22 16 25 H 0.09 2.42 8.06 -2.91 -0.02 2.39 16 26 H 0.09 2.55 7.83 -2.91 -0.02 2.52 16 27 H 0.10 2.66 8.06 -2.91 -0.02 2.63 16 28 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 29 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 0.86 7.38 -2.38 -0.02 0.84 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.12 2.03 8.14 -2.38 -0.02 2.01 16 35 H 0.41 12.09 8.30 -92.71 -0.77 11.32 16 36 H 0.07 2.20 8.01 -2.39 -0.02 2.18 16 37 H 0.02 1.06 7.80 -2.39 -0.02 1.04 16 38 H 0.38 18.53 7.87 -92.70 -0.73 17.80 16 39 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 40 H 0.09 2.60 8.01 -2.39 -0.02 2.58 16 41 H 0.04 1.75 7.87 -2.39 -0.02 1.73 16 42 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 44 H 0.07 1.88 8.09 -2.39 -0.02 1.86 16 45 H 0.10 2.37 8.10 -2.38 -0.02 2.35 16 Total: -1.00 -65.23 365.38 2.74 -62.49 By element: Atomic # 1 Polarization: 40.89 SS G_CDS: -0.55 Total: 40.35 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: 5.10 Total: -12.87 kcal Atomic # 7 Polarization: -111.78 SS G_CDS: -3.79 Total: -115.57 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.04 Total: -22.79 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -65.23 2.74 -62.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273140529.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.272 kcal (2) G-P(sol) polarization free energy of solvation -65.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds