Wall clock time and date at job start Tue Mar 31 2020 01:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46797 * 2 1 4 4 N 1.46896 * 109.47462 * 119.99729 * 2 1 3 5 5 C 1.47664 * 110.99681 * 53.49162 * 4 2 1 6 6 C 1.54524 * 107.05416 * 123.12202 * 5 4 2 7 7 C 1.54436 * 102.63359 * 22.93496 * 6 5 4 8 8 H 1.08991 * 110.81373 * 80.38487 * 7 6 5 9 9 C 1.48269 * 111.00174 * 174.05388 * 4 2 1 10 10 H 1.09000 * 111.35426 * 91.92565 * 9 4 2 11 11 C 1.53124 * 108.11384 * 329.42009 * 9 4 2 12 12 C 1.52893 * 109.33054 * 182.69989 * 11 9 4 13 13 C 1.50344 * 109.30776 * 52.84791 * 12 11 9 14 14 O 1.21282 * 118.80061 * 158.34213 * 13 12 11 15 15 N 1.33351 * 122.40315 * 338.31903 * 13 12 11 16 16 C 1.46494 * 117.29296 * 179.78061 * 15 13 12 17 17 C 1.53005 * 109.46874 * 89.99654 * 16 15 13 18 18 C 1.50703 * 109.46958 * 179.97438 * 17 16 15 19 19 H 1.07996 * 120.00234 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99957 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99759 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 120.00137 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47090 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47456 * 119.99760 * 22 20 18 25 25 H 1.48501 * 109.47046 * 239.99990 * 22 20 18 26 26 H 1.09002 * 109.47100 * 299.99934 * 1 2 3 27 27 H 1.09006 * 109.47614 * 59.99956 * 1 2 3 28 28 H 1.08999 * 109.47318 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46725 * 240.00678 * 2 1 3 30 30 H 1.08999 * 109.46988 * 184.62652 * 3 2 1 31 31 H 1.09005 * 109.47024 * 304.62326 * 3 2 1 32 32 H 1.09000 * 109.47304 * 64.62749 * 3 2 1 33 33 H 1.08998 * 109.91604 * 242.47497 * 5 4 2 34 34 H 1.09001 * 109.91856 * 3.76862 * 5 4 2 35 35 H 1.09002 * 110.78091 * 141.26800 * 6 5 4 36 36 H 1.08998 * 110.78390 * 264.52989 * 6 5 4 37 37 H 1.08996 * 109.50017 * 62.73889 * 11 9 4 38 38 H 1.09008 * 109.49078 * 302.65483 * 11 9 4 39 39 H 1.08995 * 109.50092 * 292.89574 * 12 11 9 40 40 H 1.09002 * 109.49482 * 172.79725 * 12 11 9 41 41 H 1.09000 * 109.47513 * 209.99445 * 16 15 13 42 42 H 1.09002 * 109.47222 * 330.00364 * 16 15 13 43 43 H 1.09000 * 109.47594 * 300.00397 * 17 16 15 44 44 H 1.09002 * 109.47074 * 60.00615 * 17 16 15 45 45 H 0.97000 * 119.99577 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 1.4228 -2.0381 1.3142 6 6 2.5907 -3.0481 1.3762 7 6 3.7633 -2.1781 1.8793 8 1 3.7121 -2.0465 2.9601 9 6 3.4948 -0.8376 1.1641 10 1 3.9880 -0.0009 1.6590 11 6 3.9273 -0.9492 -0.3006 12 6 5.4391 -1.1678 -0.3667 13 6 5.8113 -2.3345 0.5055 14 8 6.8567 -2.9118 0.2943 15 7 5.0341 -2.7575 1.5032 16 6 5.5035 -3.9081 2.2789 17 6 6.3483 -3.4185 3.4570 18 6 6.8307 -4.6021 4.2554 19 1 6.5621 -5.6033 3.9526 20 6 7.6150 -4.4067 5.3724 21 7 7.9425 -3.1874 5.7408 22 14 8.2136 -5.8738 6.3616 23 1 7.7110 -7.1266 5.7424 24 1 9.6984 -5.8889 6.3755 25 1 7.7066 -5.7722 7.7537 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8932 -0.5137 -0.8900 30 1 3.1267 1.4437 -0.0829 31 1 1.6105 1.9797 -0.8457 32 1 1.7458 1.9319 0.9285 33 1 0.8267 -2.1035 2.2244 34 1 0.8000 -2.2437 0.4436 35 1 2.3721 -3.8493 2.0822 36 1 2.8043 -3.4536 0.3873 37 1 3.6692 -0.0305 -0.8272 38 1 3.4171 -1.7920 -0.7672 39 1 5.9518 -0.2726 -0.0151 40 1 5.7320 -1.3749 -1.3959 41 1 4.6465 -4.4675 2.6541 42 1 6.1082 -4.5535 1.6418 43 1 7.2053 -2.8590 3.0819 44 1 5.7436 -2.7730 4.0942 45 1 8.4940 -3.0499 6.5268 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273914974.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:50 Heat of formation + Delta-G solvation = -27.613815 kcal Electronic energy + Delta-G solvation = -23444.521551 eV Core-core repulsion = 20268.801490 eV Total energy + Delta-G solvation = -3175.720061 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.13003 -38.79439 -35.79149 -34.09143 -33.36159 -32.60404 -29.75414 -28.90555 -28.33051 -26.75797 -25.06684 -23.65325 -22.60568 -21.54563 -21.01064 -19.23055 -17.97732 -16.92669 -16.41746 -16.23582 -15.98813 -15.13775 -14.81378 -14.56097 -14.45466 -14.03750 -13.76449 -13.38391 -12.81532 -12.74317 -12.55636 -12.35962 -12.31670 -12.18962 -12.07865 -11.83120 -11.45604 -11.25237 -11.21979 -11.10274 -10.97377 -10.90713 -10.81145 -10.68226 -10.55587 -9.83406 -9.81247 -9.29660 -8.98044 -8.39851 -8.32361 -8.01817 -5.97683 -4.00273 3.11220 3.33532 3.34850 3.41244 3.45621 3.85869 4.40405 4.46185 4.49296 4.71665 4.76027 4.81396 4.89337 5.04120 5.10959 5.14947 5.23731 5.29386 5.38559 5.42305 5.45536 5.58153 5.60379 5.66042 5.70295 5.78671 5.79795 5.82171 5.91233 5.99334 6.07997 6.15095 6.18174 6.26425 6.59275 6.77182 6.87420 6.92391 6.98548 7.66968 7.78111 8.03306 8.09340 8.40463 8.70001 9.06533 9.63300 11.13930 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026215 B = 0.004270 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.820402 B = 6555.162773 C = 6962.819787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.064 3.936 3 C -0.148 4.148 4 N -0.516 5.516 5 C 0.041 3.959 6 C -0.155 4.155 7 C 0.145 3.855 8 H 0.100 0.900 9 C 0.068 3.932 10 H 0.104 0.896 11 C -0.151 4.151 12 C -0.133 4.133 13 C 0.510 3.490 14 O -0.547 6.547 15 N -0.589 5.589 16 C 0.109 3.891 17 C 0.015 3.985 18 C -0.518 4.518 19 H 0.056 0.944 20 C 0.058 3.942 21 N -0.893 5.893 22 Si 0.893 3.107 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.021 0.979 44 H 0.015 0.985 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.338 7.999 -12.862 22.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.044 4.044 3 C -0.206 4.206 4 N -0.241 5.241 5 C -0.087 4.087 6 C -0.195 4.195 7 C 0.039 3.961 8 H 0.118 0.882 9 C -0.040 4.040 10 H 0.122 0.878 11 C -0.190 4.190 12 C -0.174 4.174 13 C 0.298 3.702 14 O -0.425 6.425 15 N -0.319 5.319 16 C -0.012 4.012 17 C -0.023 4.023 18 C -0.557 4.557 19 H 0.075 0.925 20 C -0.143 4.143 21 N -0.533 5.533 22 Si 0.721 3.279 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.040 0.960 44 H 0.033 0.967 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.876 8.124 -12.433 21.740 hybrid contribution 0.554 -1.172 0.006 1.296 sum -15.322 6.952 -12.427 20.917 Atomic orbital electron populations 1.21964 0.94475 1.02033 1.02189 1.21872 0.95326 0.95416 0.91806 1.21935 1.01247 0.95109 1.02265 1.63967 1.04487 1.17691 1.37917 1.22929 0.96649 0.87120 1.02003 1.23182 0.95270 0.98836 1.02201 1.21473 0.82866 0.91424 1.00378 0.88183 1.22841 0.88579 0.97818 0.94803 0.87783 1.22384 0.95664 1.02971 0.97970 1.21609 0.96649 0.98256 1.00879 1.19978 0.84008 0.85434 0.80813 1.90734 1.23838 1.57198 1.70743 1.47086 1.19618 1.33216 1.31999 1.21925 0.98464 0.86503 0.94303 1.19343 0.94821 0.96941 0.91174 1.21133 1.31603 0.92866 1.10114 0.92544 1.24994 0.96087 0.95713 0.97501 1.69987 1.37465 1.20102 1.25702 0.86515 0.78592 0.82917 0.79851 1.19699 1.20990 1.21034 0.91746 0.92348 0.92445 0.93153 0.92209 0.92446 0.91593 0.90019 0.92177 0.89951 0.91185 0.89717 0.91403 0.88495 0.88641 0.92046 0.90686 0.96020 0.96687 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.94 37.16 0.33 -0.77 16 2 C 0.06 0.55 1.98 -67.71 -0.13 0.42 16 3 C -0.15 -1.17 8.70 37.16 0.32 -0.85 16 4 N -0.52 -5.40 5.02 -215.13 -1.08 -6.48 16 5 C 0.04 0.41 6.11 -2.60 -0.02 0.39 16 6 C -0.16 -1.85 5.80 -25.18 -0.15 -1.99 16 7 C 0.14 2.09 3.12 -67.50 -0.21 1.88 16 8 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 9 C 0.07 0.81 2.79 -66.22 -0.18 0.62 16 10 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 11 C -0.15 -1.62 3.62 -26.72 -0.10 -1.72 16 12 C -0.13 -1.75 6.08 -28.11 -0.17 -1.92 16 13 C 0.51 9.51 7.47 -11.79 -0.09 9.43 16 14 O -0.55 -12.80 16.21 5.56 0.09 -12.71 16 15 N -0.59 -10.65 2.49 -166.38 -0.41 -11.07 16 16 C 0.11 2.37 5.02 -4.04 -0.02 2.35 16 17 C 0.02 0.40 5.28 -27.88 -0.15 0.26 16 18 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 19 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -27.46 13.29 55.43 0.74 -26.72 16 22 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.42 6.13 -51.93 -0.32 0.10 16 29 H 0.05 0.44 5.76 -51.93 -0.30 0.14 16 30 H 0.06 0.49 5.98 -51.93 -0.31 0.18 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.52 5.90 -51.93 -0.31 0.22 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.85 7.39 -51.93 -0.38 0.47 16 37 H 0.08 0.75 4.74 -51.93 -0.25 0.50 16 38 H 0.07 0.74 6.50 -51.92 -0.34 0.41 16 39 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.06 1.22 7.79 -51.93 -0.40 0.81 16 42 H 0.07 1.76 7.14 -51.93 -0.37 1.39 16 43 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 338.42 15.07 5.10 5.10 Total: -1.00 -33.16 338.42 -9.15 -42.31 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -7.59 Total: -1.87 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -0.97 Total: -5.62 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: -0.76 Total: -44.27 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.09 Total: -12.71 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.16 -9.15 -42.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273914974.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.701 kcal (2) G-P(sol) polarization free energy of solvation -33.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds