Wall clock time and date at job start Tue Mar 31 2020 01:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46797 * 2 1 4 4 N 1.46896 * 109.47462 * 119.99729 * 2 1 3 5 5 C 1.47664 * 110.99681 * 53.49162 * 4 2 1 6 6 C 1.54524 * 107.05416 * 123.12202 * 5 4 2 7 7 C 1.54436 * 102.63359 * 22.93496 * 6 5 4 8 8 H 1.08991 * 110.81373 * 80.38487 * 7 6 5 9 9 C 1.48269 * 111.00174 * 174.05388 * 4 2 1 10 10 H 1.09000 * 111.35426 * 91.92565 * 9 4 2 11 11 C 1.53124 * 108.11384 * 329.42009 * 9 4 2 12 12 C 1.52893 * 109.33054 * 182.69989 * 11 9 4 13 13 C 1.50344 * 109.30776 * 52.84791 * 12 11 9 14 14 O 1.21282 * 118.80061 * 158.34213 * 13 12 11 15 15 N 1.33351 * 122.40315 * 338.31903 * 13 12 11 16 16 C 1.46494 * 117.29296 * 179.78061 * 15 13 12 17 17 C 1.53005 * 109.46874 * 89.99654 * 16 15 13 18 18 C 1.50703 * 109.46958 * 179.97438 * 17 16 15 19 19 H 1.07996 * 120.00234 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99957 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99759 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 120.00137 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47090 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47456 * 119.99760 * 22 20 18 25 25 H 1.48501 * 109.47046 * 239.99990 * 22 20 18 26 26 H 1.09002 * 109.47100 * 299.99934 * 1 2 3 27 27 H 1.09006 * 109.47614 * 59.99956 * 1 2 3 28 28 H 1.08999 * 109.47318 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46725 * 240.00678 * 2 1 3 30 30 H 1.08999 * 109.46988 * 184.62652 * 3 2 1 31 31 H 1.09005 * 109.47024 * 304.62326 * 3 2 1 32 32 H 1.09000 * 109.47304 * 64.62749 * 3 2 1 33 33 H 1.08998 * 109.91604 * 242.47497 * 5 4 2 34 34 H 1.09001 * 109.91856 * 3.76862 * 5 4 2 35 35 H 1.09002 * 110.78091 * 141.26800 * 6 5 4 36 36 H 1.08998 * 110.78390 * 264.52989 * 6 5 4 37 37 H 1.08996 * 109.50017 * 62.73889 * 11 9 4 38 38 H 1.09008 * 109.49078 * 302.65483 * 11 9 4 39 39 H 1.08995 * 109.50092 * 292.89574 * 12 11 9 40 40 H 1.09002 * 109.49482 * 172.79725 * 12 11 9 41 41 H 1.09000 * 109.47513 * 209.99445 * 16 15 13 42 42 H 1.09002 * 109.47222 * 330.00364 * 16 15 13 43 43 H 1.09000 * 109.47594 * 300.00397 * 17 16 15 44 44 H 1.09002 * 109.47074 * 60.00615 * 17 16 15 45 45 H 0.97000 * 119.99577 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 1.4228 -2.0381 1.3142 6 6 2.5907 -3.0481 1.3762 7 6 3.7633 -2.1781 1.8793 8 1 3.7121 -2.0465 2.9601 9 6 3.4948 -0.8376 1.1641 10 1 3.9880 -0.0009 1.6590 11 6 3.9273 -0.9492 -0.3006 12 6 5.4391 -1.1678 -0.3667 13 6 5.8113 -2.3345 0.5055 14 8 6.8567 -2.9118 0.2943 15 7 5.0341 -2.7575 1.5032 16 6 5.5035 -3.9081 2.2789 17 6 6.3483 -3.4185 3.4570 18 6 6.8307 -4.6021 4.2554 19 1 6.5621 -5.6033 3.9526 20 6 7.6150 -4.4067 5.3724 21 7 7.9425 -3.1874 5.7408 22 14 8.2136 -5.8738 6.3616 23 1 7.7110 -7.1266 5.7424 24 1 9.6984 -5.8889 6.3755 25 1 7.7066 -5.7722 7.7537 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8932 -0.5137 -0.8900 30 1 3.1267 1.4437 -0.0829 31 1 1.6105 1.9797 -0.8457 32 1 1.7458 1.9319 0.9285 33 1 0.8267 -2.1035 2.2244 34 1 0.8000 -2.2437 0.4436 35 1 2.3721 -3.8493 2.0822 36 1 2.8043 -3.4536 0.3873 37 1 3.6692 -0.0305 -0.8272 38 1 3.4171 -1.7920 -0.7672 39 1 5.9518 -0.2726 -0.0151 40 1 5.7320 -1.3749 -1.3959 41 1 4.6465 -4.4675 2.6541 42 1 6.1082 -4.5535 1.6418 43 1 7.2053 -2.8590 3.0819 44 1 5.7436 -2.7730 4.0942 45 1 8.4940 -3.0499 6.5268 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273914974.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:49 Heat of formation + Delta-G solvation = -49.796619 kcal Electronic energy + Delta-G solvation = -23445.483470 eV Core-core repulsion = 20268.801490 eV Total energy + Delta-G solvation = -3176.681980 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.28061 -40.06621 -37.17430 -35.66032 -34.49381 -34.24816 -31.51016 -29.92001 -29.36255 -27.54265 -26.90451 -24.95315 -23.71790 -22.82693 -22.53439 -20.14515 -19.20628 -18.66751 -17.87153 -17.57982 -17.13767 -16.65186 -16.17194 -15.91698 -15.66020 -15.18080 -14.77959 -14.67408 -14.51208 -14.25270 -13.69980 -13.55885 -13.48615 -13.10438 -13.02964 -12.90555 -12.86937 -12.67297 -12.59676 -12.46628 -12.11694 -12.01451 -11.86442 -11.82446 -11.73305 -11.59237 -11.54272 -11.39585 -10.61219 -10.57957 -9.62990 -9.19382 -8.24326 -6.36909 1.37553 1.39365 1.52483 1.63598 2.02272 2.39871 2.93186 3.09124 3.38750 3.50449 3.62994 3.80092 4.05168 4.15456 4.16888 4.19807 4.24149 4.34451 4.40028 4.42423 4.55001 4.63384 4.72387 4.73338 4.78443 4.84026 4.91066 4.92231 4.95271 5.02339 5.05882 5.11899 5.19592 5.22802 5.29932 5.41477 5.46452 5.53020 5.55953 5.79333 5.95633 6.15174 6.21435 6.59646 6.78327 7.20881 7.32659 8.88306 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026215 B = 0.004270 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.820402 B = 6555.162773 C = 6962.819787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.060 3.940 3 C -0.147 4.147 4 N -0.522 5.522 5 C 0.047 3.953 6 C -0.147 4.147 7 C 0.132 3.868 8 H 0.078 0.922 9 C 0.074 3.926 10 H 0.096 0.904 11 C -0.139 4.139 12 C -0.123 4.123 13 C 0.498 3.502 14 O -0.605 6.605 15 N -0.586 5.586 16 C 0.126 3.874 17 C 0.028 3.972 18 C -0.544 4.544 19 H 0.064 0.936 20 C 0.000 4.000 21 N -0.933 5.933 22 Si 0.971 3.029 23 H -0.260 1.260 24 H -0.280 1.280 25 H -0.272 1.272 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.114 0.886 38 H 0.073 0.927 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.082 0.918 42 H 0.055 0.945 43 H -0.026 1.026 44 H -0.004 1.004 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.362 8.001 -13.938 24.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.047 4.047 3 C -0.205 4.205 4 N -0.247 5.247 5 C -0.080 4.080 6 C -0.187 4.187 7 C 0.027 3.973 8 H 0.096 0.904 9 C -0.035 4.035 10 H 0.114 0.886 11 C -0.177 4.177 12 C -0.163 4.163 13 C 0.288 3.712 14 O -0.487 6.487 15 N -0.315 5.315 16 C 0.003 3.997 17 C -0.009 4.009 18 C -0.582 4.582 19 H 0.082 0.918 20 C -0.197 4.197 21 N -0.573 5.573 22 Si 0.795 3.205 23 H -0.183 1.183 24 H -0.206 1.206 25 H -0.198 1.198 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.132 0.868 38 H 0.091 0.909 39 H 0.126 0.874 40 H 0.131 0.869 41 H 0.100 0.900 42 H 0.073 0.927 43 H -0.007 1.007 44 H 0.015 0.985 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.958 8.150 -13.517 23.908 hybrid contribution 1.177 -1.115 0.369 1.663 sum -16.780 7.035 -13.148 22.449 Atomic orbital electron populations 1.21942 0.93386 1.02380 1.02616 1.22009 0.96208 0.95489 0.91024 1.21938 1.01170 0.94818 1.02551 1.63993 1.03191 1.18040 1.39452 1.22926 0.95819 0.86121 1.03162 1.23113 0.94636 0.98916 1.01988 1.21692 0.81969 0.93949 0.99684 0.90430 1.22707 0.89891 0.95642 0.95223 0.88576 1.22355 0.93488 1.04587 0.97242 1.21625 0.98690 0.95689 1.00286 1.21089 0.82986 0.86178 0.80954 1.90699 1.26272 1.59315 1.72401 1.47112 1.20865 1.32238 1.31297 1.21446 0.98136 0.87672 0.92470 1.19128 0.93489 0.95816 0.92514 1.21568 1.32195 0.93637 1.10800 0.91806 1.26020 0.95982 0.99035 0.98705 1.70127 1.38083 1.22673 1.26404 0.85315 0.77878 0.79056 0.78282 1.18331 1.20632 1.19771 0.92462 0.90825 0.92120 0.92383 0.92432 0.90713 0.92576 0.89750 0.90095 0.90113 0.90950 0.86783 0.90882 0.87386 0.86907 0.89994 0.92692 1.00715 0.98534 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.94 71.98 0.64 -1.03 16 2 C 0.06 0.84 1.98 44.92 0.09 0.93 16 3 C -0.15 -1.90 8.70 71.98 0.63 -1.28 16 4 N -0.52 -9.78 5.02 -834.55 -4.19 -13.97 16 5 C 0.05 0.83 6.11 86.67 0.53 1.36 16 6 C -0.15 -3.31 5.80 31.60 0.18 -3.13 16 7 C 0.13 3.83 3.12 46.26 0.14 3.97 16 8 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 9 C 0.07 1.67 2.79 45.13 0.13 1.80 16 10 H 0.10 2.33 8.14 -2.39 -0.02 2.32 16 11 C -0.14 -2.61 3.62 30.60 0.11 -2.50 16 12 C -0.12 -3.07 6.08 29.70 0.18 -2.89 16 13 C 0.50 19.02 7.47 87.77 0.66 19.68 16 14 O -0.60 -29.64 16.21 -3.04 -0.05 -29.69 16 15 N -0.59 -21.87 2.49 -799.50 -1.99 -23.86 16 16 C 0.13 5.69 5.02 86.38 0.43 6.13 16 17 C 0.03 1.62 5.28 29.85 0.16 1.77 16 18 C -0.54 -32.43 9.11 25.60 0.23 -32.19 16 19 H 0.06 3.62 7.74 -2.91 -0.02 3.60 16 20 C 0.00 0.03 5.46 84.65 0.46 0.49 16 21 N -0.93 -59.00 13.29 21.45 0.28 -58.72 16 22 Si 0.97 45.69 29.54 68.60 2.03 47.71 16 23 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 24 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 25 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 28 H 0.06 0.66 6.13 -2.39 -0.01 0.65 16 29 H 0.06 0.76 5.76 -2.39 -0.01 0.74 16 30 H 0.06 0.76 5.98 -2.39 -0.01 0.75 16 31 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.08 1.12 5.90 -2.39 -0.01 1.11 16 35 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.07 1.62 7.39 -2.39 -0.02 1.60 16 37 H 0.11 1.57 4.74 -2.39 -0.01 1.56 16 38 H 0.07 1.36 6.50 -2.38 -0.02 1.34 16 39 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.08 3.33 7.79 -2.39 -0.02 3.31 16 42 H 0.05 2.71 7.14 -2.39 -0.02 2.69 16 43 H -0.03 -1.67 8.14 -2.39 -0.02 -1.69 16 44 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 45 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -75.51 338.42 1.62 -73.90 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.96 Total: 11.51 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: 4.57 Total: -6.89 kcal Atomic # 7 Polarization: -90.65 SS G_CDS: -5.89 Total: -96.54 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -0.05 Total: -29.69 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -75.51 1.62 -73.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273914974.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.103 kcal (2) G-P(sol) polarization free energy of solvation -75.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds